Maco1 (macoilin 1) - Rat Genome Database

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Gene: Maco1 (macoilin 1) Mus musculus
Analyze
Symbol: Maco1
Name: macoilin 1
RGD ID: 1558568
MGI Page MGI
Description: Predicted to enable microtubule binding activity. Involved in brain development. Located in several cellular components, including axon; neuron projection terminus; and nuclear membrane. Is expressed in cerebral cortex intermediate zone; cerebral cortex subventricular zone; cerebral cortex ventricular layer; cortical plate; and testis. Orthologous to human MACO1 (macoilin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110007C24Rik; 9230118A01Rik; AI317300; AI606104; brain-specific adapter protein C61; brain-specific adaptor protein C61; C61; macoilin; macoilin-1; RP23-191E19.1; Tmem57; transmembrane protein 57
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,530,070 - 134,581,242 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,530,070 - 134,580,656 (-)EnsemblGRCm39 Ensembl
GRCm384134,802,759 - 134,853,931 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,802,759 - 134,853,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,358,674 - 134,409,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,074,835 - 134,125,206 (-)NCBIMGSCv36mm8
Celera4132,985,719 - 133,036,193 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12459264   PMID:12477932   PMID:14610273   PMID:15255972   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18287559   PMID:18799693   PMID:19501082   PMID:21267068   PMID:21677750   PMID:21873635   PMID:31138677   PMID:32554809   PMID:34321999   PMID:36114006  


Genomics

Comparative Map Data
Maco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,530,070 - 134,581,242 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,530,070 - 134,580,656 (-)EnsemblGRCm39 Ensembl
GRCm384134,802,759 - 134,853,931 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,802,759 - 134,853,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,358,674 - 134,409,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,074,835 - 134,125,206 (-)NCBIMGSCv36mm8
Celera4132,985,719 - 133,036,193 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.11NCBI
MACO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38125,430,897 - 25,500,209 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl125,430,858 - 25,500,209 (+)EnsemblGRCh38hg38GRCh38
GRCh37125,757,388 - 25,826,700 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36125,630,006 - 25,698,516 (+)NCBINCBI36Build 36hg18NCBI36
Celera124,155,217 - 24,224,253 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,014,350 - 24,083,703 (+)NCBIHuRef
CHM1_1125,870,804 - 25,940,123 (+)NCBICHM1_1
T2T-CHM13v2.0125,267,240 - 25,336,586 (+)NCBIT2T-CHM13v2.0
Maco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,296,107 - 152,358,684 (-)NCBIGRCr8
mRatBN7.25147,012,416 - 147,075,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,012,867 - 147,075,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5149,713,418 - 149,775,580 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05151,485,013 - 151,547,150 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05151,469,659 - 151,531,822 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05153,122,780 - 153,184,940 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,122,781 - 153,184,940 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,895,761 - 156,958,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45153,568,570 - 153,625,433 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5145,425,062 - 145,486,860 (-)NCBICelera
Cytogenetic Map5q36NCBI
Maco1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554524,968,500 - 5,030,868 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554524,966,357 - 5,030,868 (+)NCBIChiLan1.0ChiLan1.0
MACO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21201,361,675 - 201,431,447 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11200,459,545 - 200,529,229 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,701,352 - 24,771,038 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1125,771,235 - 25,839,635 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl125,771,175 - 25,839,635 (+)Ensemblpanpan1.1panPan2
MACO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,397,715 - 74,458,126 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,397,715 - 74,458,126 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,971,562 - 71,031,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,958,973 - 75,019,065 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,958,973 - 75,019,061 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,782,199 - 71,842,536 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,788,781 - 72,848,832 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,793,316 - 73,853,360 (-)NCBIUU_Cfam_GSD_1.0
Maco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505844,281,100 - 44,330,357 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,105,359 - 10,155,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,105,870 - 10,155,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MACO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl682,933,826 - 82,997,142 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1682,934,083 - 82,995,688 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MACO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120107,272,473 - 107,340,976 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20107,269,979 - 107,340,795 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660339,021,796 - 9,091,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Maco1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247649,568,909 - 9,633,589 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247649,569,419 - 9,633,589 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Maco1
1844 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1451
Count of miRNA genes:659
Interacting mature miRNAs:831
Transcripts:ENSMUST00000030628, ENSMUST00000136113, ENSMUST00000137707, ENSMUST00000148595, ENSMUST00000150031
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133154678137617995Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse

Markers in Region
RH136179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,803,131 - 134,803,326UniSTSGRCm38
MGSCv374134,359,046 - 134,359,241UniSTSGRCm37
Celera4132,986,091 - 132,986,286UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.69UniSTS
UniSTS:235063  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,838,286 - 134,838,504UniSTSGRCm38
MGSCv374134,394,201 - 134,394,419UniSTSGRCm37
Celera4133,021,165 - 133,021,383UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.69UniSTS
UniSTS:235064  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,837,412 - 134,837,627UniSTSGRCm38
MGSCv374134,393,327 - 134,393,542UniSTSGRCm37
Celera4133,020,291 - 133,020,506UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.69UniSTS
AI606104  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,803,133 - 134,803,231UniSTSGRCm38
MGSCv374134,359,048 - 134,359,146UniSTSGRCm37
Celera4132,986,093 - 132,986,191UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.69UniSTS
Whitehead/MRC_RH41782.41UniSTS
UniSTS:235065  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,804,200 - 134,804,404UniSTSGRCm38
MGSCv374134,360,115 - 134,360,319UniSTSGRCm37
Celera4132,987,160 - 132,987,364UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.69UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK003528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY364165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY846873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY846874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030628   ⟹   ENSMUSP00000030628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,530,070 - 134,580,656 (-)Ensembl
GRCm38.p6 Ensembl4134,802,759 - 134,853,345 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,564,571 - 134,580,628 (-)Ensembl
GRCm38.p6 Ensembl4134,837,260 - 134,853,317 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137707   ⟹   ENSMUSP00000124477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,538,505 - 134,580,460 (-)Ensembl
GRCm38.p6 Ensembl4134,811,194 - 134,853,149 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148595   ⟹   ENSMUSP00000125440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,555,699 - 134,580,574 (-)Ensembl
GRCm38.p6 Ensembl4134,828,388 - 134,853,263 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,530,070 - 134,538,524 (-)Ensembl
GRCm38.p6 Ensembl4134,802,759 - 134,811,213 (-)Ensembl
RefSeq Acc Id: NM_001355499   ⟹   NP_001342428
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,580,656 (-)NCBI
GRCm384134,802,759 - 134,853,345 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355500   ⟹   NP_001342429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,580,656 (-)NCBI
GRCm384134,802,759 - 134,853,345 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355501   ⟹   NP_001342430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,580,656 (-)NCBI
GRCm384134,802,759 - 134,853,345 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025382   ⟹   NP_079658
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,580,656 (-)NCBI
GRCm384134,802,759 - 134,853,345 (-)NCBI
MGSCv374134,358,674 - 134,409,260 (-)RGD
Celera4132,985,719 - 133,036,193 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539100   ⟹   XP_006539163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,540,140 - 134,581,242 (-)NCBI
GRCm384134,812,829 - 134,853,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164305   ⟹   XP_036020198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,553,944 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784176
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,581,242 (-)NCBI
GRCm384134,802,759 - 134,853,931 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941943
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,530,070 - 134,581,242 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941944
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,531,419 - 134,581,242 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_079658   ⟸   NM_025382
- Peptide Label: isoform 1
- UniProtKB: Q7TQE6 (UniProtKB/Swiss-Prot),   Q80YA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539163   ⟸   XM_006539100
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001342430   ⟸   NM_001355501
- Peptide Label: isoform 3
- UniProtKB: Q80YA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342429   ⟸   NM_001355500
- Peptide Label: isoform 3
- UniProtKB: Q80YA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342428   ⟸   NM_001355499
- Peptide Label: isoform 2
- UniProtKB: Q80YA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000125440   ⟸   ENSMUST00000148595
RefSeq Acc Id: ENSMUSP00000124477   ⟸   ENSMUST00000137707
RefSeq Acc Id: ENSMUSP00000030628   ⟸   ENSMUST00000030628
RefSeq Acc Id: XP_036020198   ⟸   XM_036164305
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQE6-F1-model_v2 AlphaFold Q7TQE6 1-664 view protein structure

Promoters
RGD ID:6836537
Promoter ID:MM_KWN:40116
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000025959,   OTTMUST00000025962,   UC008VFR.1,   UC008VFS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,408,881 - 134,410,132 (-)MPROMDB
RGD ID:6885040
Promoter ID:EPDNEW_M5971
Type:multiple initiation site
Name:Tmem57_2
Description:Mus musculus transmembrane protein 57 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5972  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384134,831,628 - 134,831,688EPDNEW
RGD ID:6885042
Promoter ID:EPDNEW_M5972
Type:multiple initiation site
Name:Tmem57_1
Description:Mus musculus transmembrane protein 57 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5971  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384134,853,314 - 134,853,374EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913396 AgrOrtholog
Ensembl Genes ENSMUSG00000028826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030628 ENTREZGENE
  ENSMUST00000030628.15 UniProtKB/Swiss-Prot
  ENSMUST00000137707.8 UniProtKB/TrEMBL
  ENSMUST00000148595.2 UniProtKB/TrEMBL
InterPro Macoilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66146 UniProtKB/Swiss-Prot
MGD MGI:1913396 ENTREZGENE
NCBI Gene 66146 ENTREZGENE
PANTHER MACOILIN UniProtKB/Swiss-Prot
  MACOILIN UniProtKB/Swiss-Prot
  MACOILIN UniProtKB/TrEMBL
  MACOILIN UniProtKB/TrEMBL
Pfam Macoilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Maco1 PhenoGen
UniProt E0CY55_MOUSE UniProtKB/TrEMBL
  E0CZE6_MOUSE UniProtKB/TrEMBL
  MACOI_MOUSE UniProtKB/Swiss-Prot
  Q05D13_MOUSE UniProtKB/TrEMBL
  Q6PGL5_MOUSE UniProtKB/TrEMBL
  Q7TQE6 ENTREZGENE
  Q80SV6_MOUSE UniProtKB/TrEMBL
  Q80YA4 ENTREZGENE, UniProtKB/TrEMBL
  Q9CTI0_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9D6A6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 Maco1  macoilin 1  Tmem57  transmembrane protein 57  Symbol and/or name change 5135510 APPROVED