Ppt1 (palmitoyl-protein thioesterase 1) - Rat Genome Database

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Gene: Ppt1 (palmitoyl-protein thioesterase 1) Mus musculus
Analyze
Symbol: Ppt1
Name: palmitoyl-protein thioesterase 1
RGD ID: 736553
MGI Page MGI
Description: Enables palmitoyl-(protein) hydrolase activity. Acts upstream of or within several processes, including grooming behavior; protein catabolic process; and regulation of phospholipase A2 activity. Located in several cellular components, including dendrite; lysosome; and neuronal cell body. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Used to study neuronal ceroid lipofuscinosis 1 and neuronal ceroid lipofuscinosis 3. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1); PARTICIPATES IN fatty acid elongation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9530043G02Rik; AA960502; C77813; CL; CLN1; D4Ertd184; D4Ertd184e; INCL; MGC107420; palmitoyl-protein hydrolase 1; PPT; PPT-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,729,879 - 122,752,968 (+)NCBIGRCm39mm39
GRCm39 Ensembl4122,730,035 - 122,752,968 (+)Ensembl
GRCm384122,836,077 - 122,859,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4122,836,242 - 122,859,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,513,485 - 122,536,418 (+)NCBIGRCm37mm9NCBIm37
MGSCv364122,338,558 - 122,360,685 (+)NCBImm8
Celera4121,166,717 - 121,189,624 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aggression-related behavior  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal gait  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal microglial cell activation  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal podocyte morphology  (IAGP)
abnormal retinal cone bipolar cell morphology  (IAGP)
abnormal retinal neuronal layer morphology  (IAGP)
abnormal retinal rod bipolar cell morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal visual cortex morphology  (IAGP)
astrocytosis  (IAGP)
blindness  (IAGP)
brain atrophy  (IAGP)
brain inflammation  (IAGP)
decreased brain size  (IAGP)
decreased brain weight  (IAGP)
decreased exploration in new environment  (IAGP)
decreased grooming behavior  (IAGP)
decreased retinal cone cell number  (IAGP)
decreased retinal photoreceptor cell number  (IAGP)
decreased total retina thickness  (IAGP)
hindlimb paralysis  (IAGP)
hippocampal neuron degeneration  (IAGP)
impaired coordination  (IAGP)
increased body weight  (IAGP)
jerky movement  (IAGP)
limb grasping  (IAGP)
lipofuscinosis  (IAGP)
loss of cortex neurons  (IAGP)
loss of GABAergic neurons  (IAGP)
microgliosis  (IAGP)
myoclonus  (IAGP)
neurodegeneration  (IAGP)
premature death  (IAGP)
Purkinje cell degeneration  (IAGP)
retinal deposits  (IAGP)
retinal ganglion cell degeneration  (IAGP)
retinal gliosis  (IAGP)
retinal photoreceptor degeneration  (IAGP)
seizures  (IAGP)
thick neurocranium  (IAGP)
thin cerebral cortex  (IAGP)
thin retinal inner nuclear layer  (IAGP)
thin retinal outer nuclear layer  (IAGP)
References

Additional References at PubMed
PMID:9685319   PMID:10231585   PMID:10349636   PMID:10611498   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11978849   PMID:12477932   PMID:12483688   PMID:12520002   PMID:12633880  
PMID:14681479   PMID:15128596   PMID:15193291   PMID:15647513   PMID:15649713   PMID:15782199   PMID:15885820   PMID:15944199   PMID:16141072   PMID:16141073   PMID:16242638   PMID:16368712  
PMID:16542649   PMID:16571600   PMID:17046272   PMID:17341491   PMID:17656100   PMID:18245779   PMID:18371231   PMID:18704195   PMID:18948101   PMID:19345705   PMID:19416667   PMID:19640925  
PMID:19733542   PMID:19941651   PMID:21224254   PMID:21267068   PMID:21873635   PMID:21971706   PMID:22031903   PMID:22310926   PMID:22331300   PMID:22704978   PMID:23065637   PMID:23139814  
PMID:23338040   PMID:23707513   PMID:24014511   PMID:24056696   PMID:24083319   PMID:25205113   PMID:25233404   PMID:25253854   PMID:25574475   PMID:25989472   PMID:26160911   PMID:26238334  
PMID:26648046   PMID:26775238   PMID:27101989   PMID:27722792   PMID:28266544   PMID:28334871   PMID:28673981   PMID:30089511   PMID:30650354   PMID:30918483   PMID:30926747   PMID:30946007  
PMID:31134714   PMID:31262842   PMID:31578378   PMID:32290105   PMID:32581705   PMID:32938982  


Genomics

Comparative Map Data
Ppt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,729,879 - 122,752,968 (+)NCBIGRCm39mm39
GRCm39 Ensembl4122,730,035 - 122,752,968 (+)Ensembl
GRCm384122,836,077 - 122,859,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4122,836,242 - 122,859,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,513,485 - 122,536,418 (+)NCBIGRCm37mm9NCBIm37
MGSCv364122,338,558 - 122,360,685 (+)NCBImm8
Celera4121,166,717 - 121,189,624 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.27NCBI
PPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl140,072,710 - 40,097,260 (-)EnsemblGRCh38hg38GRCh38
GRCh38140,071,461 - 40,097,252 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37140,537,133 - 40,562,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,310,969 - 40,335,555 (-)NCBINCBI36hg18NCBI36
Build 34140,207,476 - 40,232,061NCBI
Celera138,820,669 - 38,845,442 (-)NCBI
Cytogenetic Map1p34.2NCBI
HuRef138,656,433 - 38,681,192 (-)NCBIHuRef
CHM1_1140,653,983 - 40,678,773 (-)NCBICHM1_1
Ppt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25135,121,176 - 135,141,076 (+)NCBI
Rnor_6.0 Ensembl5140,538,260 - 140,558,162 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05140,538,260 - 140,558,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05144,329,263 - 144,349,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,153,498 - 142,173,401 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15142,158,725 - 142,179,598 (+)NCBI
Celera5133,659,813 - 133,679,711 (+)NCBICelera
RH 3.4 Map5890.0RGD
Cytogenetic Map5q36NCBI
Ppt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,529,115 - 17,549,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,518,345 - 17,549,112 (-)NCBIChiLan1.0ChiLan1.0
PPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1140,683,841 - 40,708,609 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,683,841 - 40,708,609 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0139,358,424 - 39,383,087 (-)NCBIMhudiblu_PPA_v0panPan3
PPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,815,428 - 2,886,474 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,859,979 - 2,894,425 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,117,325 - 3,143,210 (+)NCBI
ROS_Cfam_1.0152,902,313 - 2,973,313 (+)NCBI
UMICH_Zoey_3.1152,854,181 - 2,880,060 (+)NCBI
UNSW_CanFamBas_1.0152,914,086 - 2,939,964 (+)NCBI
UU_Cfam_GSD_1.0152,930,482 - 2,956,365 (+)NCBI
Ppt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,056,908 - 56,081,782 (-)NCBI
SpeTri2.0NW_00493647421,881,692 - 21,906,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,840,905 - 95,860,837 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,840,906 - 95,860,858 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,280,518 - 89,300,475 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,809,373 - 92,833,048 (+)NCBI
ChlSab1.1 Ensembl2092,809,552 - 92,833,244 (+)Ensembl
Vero_WHO_p1.0NW_02366603324,006,277 - 24,030,955 (-)NCBI
Ppt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476422,542,892 - 22,577,077 (-)NCBI

Position Markers
AA960502  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384122,858,615 - 122,858,760UniSTSGRCm38
MGSCv374122,535,858 - 122,536,003UniSTSGRCm37
Celera4121,189,064 - 121,189,209UniSTS
Cytogenetic Map4D1-D3UniSTS
Whitehead/MRC_RH41591.48UniSTS
Ppt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D1-D3UniSTS
RH126249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384122,856,644 - 122,856,883UniSTSGRCm38
MGSCv374122,533,887 - 122,534,126UniSTSGRCm37
Celera4121,187,093 - 121,187,332UniSTS
Cytogenetic Map4D1-D3UniSTS
Whitehead/MRC_RH41589.06UniSTS
RH126388  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384122,848,387 - 122,848,634UniSTSGRCm38
MGSCv374122,525,630 - 122,525,877UniSTSGRCm37
Celera4121,178,838 - 121,179,085UniSTS
Cytogenetic Map4D1-D3UniSTS
cM Map459.1UniSTS
Whitehead/MRC_RH41589.06UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)493118593127118593Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494875058128875257Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined495069342128115487Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498657302128115487Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4101000000125000000Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101717404123233418Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4111000000126000000Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116413782124161387Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1546
Count of miRNA genes:645
Interacting mature miRNAs:797
Transcripts:ENSMUST00000030412, ENSMUST00000097902, ENSMUST00000120157, ENSMUST00000121870
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_376299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF071025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF087568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF326557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF326558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX545849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB600397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030412   ⟹   ENSMUSP00000030412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4122,836,242 - 122,859,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000097902   ⟹   ENSMUSP00000095512
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4122,836,254 - 122,850,259 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120157   ⟹   ENSMUSP00000113258
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4122,836,250 - 122,859,175 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121870   ⟹   ENSMUSP00000113367
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4122,836,246 - 122,848,975 (+)Ensembl
RefSeq Acc Id: NM_008917   ⟹   NP_032943
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394122,730,020 - 122,752,968 (+)NCBI
GRCm384122,836,227 - 122,859,175 (+)NCBI
MGSCv374122,513,485 - 122,536,418 (+)RGD
Celera4121,166,702 - 121,189,624 (+)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_376299
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394122,729,879 - 122,752,862 (+)NCBI
GRCm384122,836,077 - 122,858,998 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032943   ⟸   NM_008917
- Peptide Label: precursor
- UniProtKB: O88531 (UniProtKB/Swiss-Prot),   Q3TEL0 (UniProtKB/TrEMBL),   Q3U6J9 (UniProtKB/TrEMBL),   Q3U6W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000113258   ⟸   ENSMUST00000120157
RefSeq Acc Id: ENSMUSP00000030412   ⟸   ENSMUST00000030412
RefSeq Acc Id: ENSMUSP00000095512   ⟸   ENSMUST00000097902
RefSeq Acc Id: ENSMUSP00000113367   ⟸   ENSMUST00000121870

Promoters
RGD ID:6835904
Promoter ID:MM_KWN:39470
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000121870,   NM_008917,   UC008UOG.1,   UC008UOI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364122,513,274 - 122,513,774 (+)MPROMDB
RGD ID:6884524
Promoter ID:EPDNEW_M5713
Type:multiple initiation site
Name:Ppt1_1
Description:Mus musculus palmitoyl-protein thioesterase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384122,836,246 - 122,836,306EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298204 AgrOrtholog
Ensembl Genes ENSMUSG00000028657 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030412 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000095512 UniProtKB/TrEMBL
  ENSMUSP00000113258 UniProtKB/TrEMBL
  ENSMUSP00000113367 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030412 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000097902 UniProtKB/TrEMBL
  ENSMUST00000120157 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000121870 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Palm_thioest UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19063 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1298204 ENTREZGENE
NCBI Gene 19063 ENTREZGENE
PANTHER PTHR11247:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppt1 PhenoGen
PRINTS PPTHIESTRASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1B0P8_MOUSE UniProtKB/TrEMBL
  B1B0P9_MOUSE UniProtKB/TrEMBL
  F7CTA8_MOUSE UniProtKB/TrEMBL
  O88531 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TAR8_MOUSE UniProtKB/TrEMBL
  Q3TEL0 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6J9 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6W3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UB92_MOUSE UniProtKB/TrEMBL
  Q3UFT5_MOUSE UniProtKB/TrEMBL
  Q8VBX5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9D681 UniProtKB/Swiss-Prot
  Q9WTY3 UniProtKB/Swiss-Prot