Hpca (hippocalcin) - Rat Genome Database

Name: Hpca
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hpca (hippocalcin) Mus musculus

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Symbol:

Hpca

Name:

hippocalcin

RGD ID:

735422

MGI Page

MGI

Description:

Predicted to enable several functions, including actin binding activity; calcium ion binding activity; and identical protein binding activity. Acts upstream of or within inner ear development. Predicted to be located in several cellular components, including dendrite; neuronal cell body membrane; and perikaryon. Predicted to be active in glutamatergic synapse and postsynapse. Is expressed in ganglia; salivary gland primordium; and telencephalon. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

neuron-specific calcium-binding protein hippocalcin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HPCA (hippocalcin)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HPCAL1 (hippocalcin like 1)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Hpca (hippocalcin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	HPCA (hippocalcin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hpca (hippocalcin)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Drosophila melanogaster (fruit fly):	Nca	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	hpca	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,005,363 - 129,019,712 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,005,363 - 129,015,829 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,111,570 - 129,125,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,111,570 - 129,122,036 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	128,788,819 - 128,798,984 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,613,879 - 128,621,062 (-)	NCBI		MGSCv36	mm8
Celera	4	127,451,599 - 127,461,862 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.88	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

colorectal adenocarcinoma (ISO)

Huntington's disease (ISO)

isolated growth hormone deficiency (IEP)

torsion dystonia 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4,4'-sulfonyldiphenol (EXP)

8-Br-cAMP (ISO)

all-trans-retinoic acid (EXP)

ammonium chloride (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcium atom (EXP)

calcium(0) (EXP)

carvedilol (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cocaine (EXP)

copper(II) sulfate (ISO)

Cuprizon (ISO)

diarsenic trioxide (ISO)

dimethylarsinic acid (EXP)

ethanol (EXP)

ethylparaben (ISO)

fenvalerate (ISO)

furan (ISO)

genistein (EXP)

gentamycin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

kainic acid (EXP)

ketamine (ISO)

lead(0) (ISO)

methamphetamine (ISO)

methylarsonic acid (EXP)

mono(2-ethylhexyl) phthalate (EXP)

morphine (EXP)

nicotine (EXP)

propanal (ISO)

propranolol (ISO)

resveratrol (ISO)

sodium arsenate (EXP)

sodium arsenite (EXP)

Soman (ISO)

thapsigargin (EXP)

titanium dioxide (EXP)

trichloroethene (ISO)

triptonide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of phospholipase D activity (ISO)

calcium-mediated signaling (IEA,ISO)

cellular response to calcium ion (ISO,ISS)

cellular response to electrical stimulus (IEA,ISO)

cellular response to L-glutamate (IEA,ISO)

inner ear development (IDA)

negative regulation of guanylate cyclase activity (ISO)

positive regulation of adenylate cyclase activity (ISO)

positive regulation of phospholipase activity (ISO)

positive regulation of protein targeting to membrane (IEA,ISO)

regulation of postsynaptic neurotransmitter receptor internalization (IEA,ISO)

regulation of signal transduction (IBA)

regulation of voltage-gated calcium channel activity (ISO,ISS)

response to Aroclor 1254 (IEA,ISO)

response to ketamine (IEA,ISO)

response to L-glutamate (ISO)

response to organic cyclic compound (ISO)

retina development in camera-type eye (IEA,ISO)

Cellular Component

axon (IEA,ISO)

cytoplasm (ISO,ISS)

cytosol (ISO,ISS)

dendrite cytoplasm (IEA,ISO)

dendrite membrane (IEA,ISO)

dendritic spine head (IEA,ISO)

glutamatergic synapse (IEA,ISO)

membrane (ISO,ISS)

neuronal cell body membrane (IEA,ISO)

perikaryon (IEA,ISO)

postsynapse (ISO)

Molecular Function

actin binding (ISO,ISS)

calcium ion binding (IBA,ISO,ISS)

identical protein binding (ISO,ISS)

kinase binding (IEA,ISO)

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal locomotor behavior (IEA)

hippocampal neuron degeneration (IAGP)

hyperactivity (IEA)

impaired glucose tolerance (IEA)

increased bone mineral content (IEA)

increased circulating alkaline phosphatase level (IEA)

increased grip strength (IEA)

increased susceptibility to neuronal excitotoxicity (IAGP)

neuron degeneration (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma.	Conesa-Zamora P, etal., Int J Cancer. 2013 Jan 15;132(2):297-307. doi: 10.1002/ijc.27674. Epub 2012 Jun 28.
2.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	MGD IEA	MGD IEA
6.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Diminished hippocalcin expression in Huntington's disease brain does not account for increased striatal neuron vulnerability as assessed in primary neurons.	Rudinskiy N, etal., J Neurochem. 2009 Oct;111(2):460-72. doi: 10.1111/j.1471-4159.2009.06344.x. Epub 2009 Aug 17.
12.	Hippocalcin expression in the brain of the Snell dwarf mutant mouse.	Sugisaki T, etal., Brain Res. 1994 Nov 28;665(1):101-6.

Additional References at PubMed

PMID:8889548	PMID:9931466	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11978849	PMID:12477932	PMID:12819125	PMID:14610273	PMID:14739275	PMID:15489334	PMID:15607944
PMID:15878804	PMID:16141072	PMID:16141073	PMID:16203087	PMID:16602821	PMID:17257765	PMID:17296551	PMID:19398467	PMID:19423573	PMID:21267068	PMID:21795542	PMID:21873635
PMID:22639951	PMID:22903314	PMID:23142228	PMID:23260046	PMID:24014668	PMID:25752619	PMID:30091036	PMID:30256386	PMID:31845734	PMID:32325033	PMID:34193558	PMID:34321999
PMID:35831953	PMID:36417873	PMID:37142655	PMID:38355793

Genomics

Comparative Map Data

Hpca
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,005,363 - 129,019,712 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,005,363 - 129,015,829 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,111,570 - 129,125,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,111,570 - 129,122,036 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	128,788,819 - 128,798,984 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,613,879 - 128,621,062 (-)	NCBI		MGSCv36	mm8
Celera	4	127,451,599 - 127,461,862 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.88	NCBI

HPCA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,885,996 - 32,894,646 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,885,994 - 32,898,441 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	33,352,092 - 33,360,247 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	33,124,685 - 33,132,834 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	33,021,190 - 33,029,339	NCBI
Celera	1	31,620,733 - 31,628,882 (+)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	31,467,222 - 31,475,369 (+)	NCBI		HuRef
CHM1_1	1	33,467,533 - 33,475,680 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,745,769 - 32,754,441 (+)	NCBI		T2T-CHM13v2.0

Hpca
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,739,978 - 146,750,961 (-)	NCBI		GRCr8
mRatBN7.2	5	141,455,616 - 141,466,252 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,455,613 - 141,463,841 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,153,733 - 144,162,193 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	145,923,554 - 145,932,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	145,923,306 - 145,931,631 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,295,124 - 147,305,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,294,820 - 147,303,346 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,029,882 - 151,040,514 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,267,898 - 148,276,223 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	148,277,936 - 148,286,262 (-)	NCBI
Celera	5	139,935,623 - 139,943,977 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Hpca
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,140,373 - 11,154,261 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	11,142,282 - 11,150,798 (+)	NCBI	ChiLan1.0	ChiLan1.0

HPCA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	193,927,688 - 193,936,359 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,049,890 - 193,058,560 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	32,176,465 - 32,185,133 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	33,362,921 - 33,371,524 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	33,363,673 - 33,371,524 (+)	Ensembl	panpan1.1		panPan2

HPCA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,464,631 - 68,473,661 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,465,280 - 68,473,310 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,045,221 - 65,053,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,030,436 - 69,038,834 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,029,808 - 69,039,028 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,841,971 - 65,850,366 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,864,436 - 66,872,823 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,856,319 - 67,864,715 (-)	NCBI		UU_Cfam_GSD_1.0

Hpca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,961,196 - 49,969,278 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,785,879 - 15,798,740 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,786,171 - 15,794,830 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HPCA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	89,188,133 - 89,197,045 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	89,187,544 - 89,197,049 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	83,214,827 - 83,224,104 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HPCA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	99,974,952 - 99,983,194 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	99,975,742 - 99,980,728 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	16,708,814 - 16,717,377 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hpca
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,990,729 - 15,999,615 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,990,910 - 15,999,617 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2418
Count of miRNA genes:	531
Interacting mature miRNAs:	655
Transcripts:	ENSMUST00000030572, ENSMUST00000095807, ENSMUST00000116442, ENSMUST00000116444, ENSMUST00000125931, ENSMUST00000135763, ENSMUST00000139450, ENSMUST00000149763, ENSMUST00000164649
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142139	Adip12_m	adiposity 12 (mouse)			Not determined		4	124621281	156860686	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112824389	146824389	Mouse
1301525	Lmb1_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		4	124264957	150676858	Mouse
14746982	Manh56_m	mandible shape 56 (mouse)					4	117815917	151815917	Mouse
4141623	W6q13_m	weight 6 weeks QTL 13 (mouse)			Not determined			88982069	140468203	Mouse
12910797	Pwgrq4_m	pre-weaning growth rate QTL 4 (mouse)					4	105835310	141433838	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
12910794	Pwbwq8_m	post-weaning body weight QTL 8 (mouse)					4	105835310	141433838	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111009051	145009280	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107791564	141791756	Mouse
1302149	Tlsr2_m	thymic lymphoma suppressor region 2 (mouse)			Not determined		4	124264957	142230960	Mouse
12910813	Pwbwq4_m	pre-weaning body weight QTL 4 (mouse)					4	105835310	141433838	Mouse
4141093	W3q17_m	weight 3 weeks QTL 17 (mouse)			Not determined			88982069	140468203	Mouse
27226757	Femd1_m	femur midshaft diameter 1, 5 week (mouse)					4	123993793	144326570	Mouse
12910808	Pwbwq9_m	post-weaning body weight QTL 9 (mouse)					4	105835310	141433838	Mouse
1300621	Tpnr1_m	thermal pain response 1 (mouse)			Not determined		4	125230872	156860686	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116154678	150154782	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300663	Start2_m	startle response 2 (mouse)			Not determined		4	107264957	141265153	Mouse
1300917	Gasa1_m	gastritis type A susceptibility locus 1 (mouse)			Not determined		4	124055093	142438020	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
10412210	Cypr6_m	cytokine production 6 (mouse)			Not determined		4	120617848	154617995	Mouse
1302078	Sluc21_m	susceptibility to lung cancer 21 (mouse)			Not determined		4	117401141	151401275	Mouse
10045620	Heal22_m	wound healing/regeneration 22 (mouse)			Not determined		4	125230872	156860686	Mouse
4142481	Gct1_m	granulosa cell tumorigenesis 1 (mouse)			Not determined		4	127784226	156860686	Mouse
4141065	Shali2_m	survival time to hyperoxic acute lung injury 2 (mouse)			Not determined			124055093	141572792	Mouse
10412072	Ssen1_m	suseptibility to Sendai virus 1 (mouse)			Not determined		4	109658132	133154782	Mouse
13503348	Bntq18_m	bone traits QTL 18 (mouse)					4	120617848	154617995	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
1300655	Nidds_m	non-insulin-dependent diabetes mellitus in SJL (mouse)			Not determined		4	115030777	129465915	Mouse
1300781	Lith8_m	lithogenic gene 8 (mouse)			Not determined		4	107264957	141265153	Mouse
39128212	Lwq21_m	liver weight QTL 21 (mouse)					4	88982069	140468203	Mouse
4141180	Ssic1_m	susceptibility to small intestinal cancer 1 (mouse)			Not determined			120674005	154674151	Mouse
1301847	Fecq2_m	fecundity QTL 2 (mouse)			Not determined		4	100071971	134072206	Mouse
1302102	Bis1_m	beta-carboline-induced seizures 1 (mouse)			Not determined		4	119864433	153864536	Mouse
10043996	Gct5_m	granulosa cell tumorigenesis 5 (mouse)			Not determined		4	127784226	156860686	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
10043985	Stheal12_m	soft tissue heal 12 (mouse)			Not determined		4	121342649	155342753	Mouse
1301982	Pltiq1_m	phospholipid transfer protein inducibility QTL 1 (mouse)			Not determined		4	124621281	156860686	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
1300803	Sluc6_m	susceptibility to lung cancer 6 (mouse)			Not determined		4	120674005	154674151	Mouse
4141549	W10q10_m	weight 10 weeks QTL 10 (mouse)			Not determined			88982069	140468203	Mouse
4142061	Chlq16_m	circulating hormone level QTL 16 (mouse)			Not determined		4	121342649	155342753	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138342753	Mouse
1300933	Cdcs9_m	cytokine deficiency colitis susceptibility 9 (mouse)			Not determined		4	125230872	156860686	Mouse
1300809	Ccrs2_m	corpus callosum hemisphere surface size 2 (mouse)			Not determined		4	107264957	141265153	Mouse
1301452	Elsgp1_m	elevated serum gp70 1 (mouse)			Not determined		4	121342649	155342753	Mouse
1301964	Bw8q2_m	body weight at 8 weeks QTL 2 (mouse)			Not determined		4	119864433	153864536	Mouse
1301106	Skts7_m	skin tumor susceptibility 7 (mouse)			Not determined		4	100071971	134072206	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108477692	142477692	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108477692	142477692	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108477692	142477692	Mouse
1300858	Tafat_m	tally ho associated mesenteric fat pad weight (mouse)			Not determined		4	124621281	156860686	Mouse
27095924	Pglq2_m	pelvic girdle length QTL 2, 5 week (mouse)					4	69118237	130727311	Mouse
10755531	Lymph3_m	lymphocyte differential 3 (mouse)					4	124553483	156860686	Mouse
27095917	Scvln14_m	sacral vertebrae length 2, 16 week (mouse)					4	68018237	130277062	Mouse
15039382	Ltgq7_m	liver triglyceride QTL 7 (mouse)					4	105705794	139705794	Mouse
11533916	Mts1_m	mammary tumor susceptibility 1 (mouse)					4	125289325	156860686	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111009051	145009280	Mouse
15039377	Bw45_m	body weight QTL 45 (mouse)					4	105705794	139705794	Mouse
12880433	Fgf23lq1_m	FGF23 serum level QTL 1 (mouse)					4	101157197	135157197	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112523489	146523489	Mouse
15039378	Adip30_m	adiposity 30 (mouse)					4	105705794	139705794	Mouse
1357800	Tgq3_m	triglyceride QTL 3 (mouse)			Not determined		4	107055093	141055180	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112182386	146182386	Mouse

Markers in Region

AB015200

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	129,112,175 - 129,112,269	UniSTS	GRCm38
MGSCv37	4	128,789,419 - 128,789,513	UniSTS	GRCm37
Celera	4	127,452,201 - 127,452,295	UniSTS
Cytogenetic Map	4	D2-D3	UniSTS
Whitehead/MRC_RH	4	1682.5	UniSTS

AI507302

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	129,111,384 - 129,111,479	UniSTS	GRCm38
MGSCv37	4	128,788,628 - 128,788,723	UniSTS	GRCm37
Celera	4	127,451,408 - 127,451,503	UniSTS
Cytogenetic Map	4	D2.2	UniSTS
Cytogenetic Map	4	D2-D3	UniSTS
Whitehead/MRC_RH	4	1673.6	UniSTS

D5Wox35

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	129,111,700 - 129,111,856	UniSTS	GRCm38
MGSCv37	4	128,788,944 - 128,789,100	UniSTS	GRCm37
Celera	4	127,451,724 - 127,451,882	UniSTS
Cytogenetic Map	4	D2-D3	UniSTS
Cytogenetic Map	4	D2.2	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001421088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001421089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001421090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001421091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001421092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_010471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_185239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_185240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_185241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006502775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB015200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF326551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF326552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI835374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK002992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL606977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY128037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY129411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY769297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU210925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX238650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX239660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX240088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX240757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000030572 ⟹ ENSMUSP00000030572

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,005,369 - 129,015,084 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,111,576 - 129,121,291 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000095807 ⟹ ENSMUSP00000093486

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,005,363 - 129,012,760 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,111,570 - 129,118,967 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000116442 ⟹ ENSMUSP00000112143

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,006,053 - 129,014,739 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,112,260 - 129,120,946 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000116444 ⟹ ENSMUSP00000112145

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,005,363 - 129,015,829 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,111,570 - 129,122,036 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000125931 ⟹ ENSMUSP00000115031

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,006,242 - 129,015,718 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,112,449 - 129,121,925 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000135763 ⟹ ENSMUSP00000120655

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,012,398 - 129,015,501 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,118,605 - 129,121,708 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000139450 ⟹ ENSMUSP00000119178

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,006,067 - 129,015,682 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,112,274 - 129,121,889 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000149763 ⟹ ENSMUSP00000115619

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,006,468 - 129,015,532 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,112,675 - 129,121,739 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000164649 ⟹ ENSMUSP00000129548

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	129,005,369 - 129,015,533 (-)	Ensembl
GRCm38.p6 Ensembl	4	129,111,576 - 129,121,740 (-)	Ensembl

RefSeq Acc Id:

NM_001130419 ⟹ NP_001123891

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,516 (-)	NCBI
GRCm38	4	129,111,570 - 129,121,747 (-)	NCBI
MGSCv37	4	128,788,819 - 128,798,984 (-)	RGD
Celera	4	127,451,594 - 127,462,047 (-)	NCBI
cM Map	4		ENTREZGENE

Sequence:

show sequence

TCTGAGGCGGAGGTAGCAGGGGGCGTGTCTGGCCCCTGGAAGACCTTGGGACTGAGCAATGGGT
GCTCCCTCCTCCCTAGAGAGCCCCCAGTTCATCTGGCTCGGGAGTTGAGGTGCGGGGGCAGCGA
GGGTGCCTATCGGATTCCTCCCTCAGAGCGACAGGCGGCCCTGCGCCCAGGTGGGACTTGGCTC
TTCTGCCATGGGCAAGCAGAACAGCAAGCTGCGGCCAGAGATGCTGCAGGACCTGCGAGAGAAC
ACGGAGTTCTCTGAGCTGGAGCTACAGGAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCACTG
GCATCCTCAACGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTATGGCGACGCCTC
CAAGTTTGCCGAGCACGTCTTCCGCACCTTTGACACCAACAGCGACGGCACCATCGACTTCCGG
GAGTTCATCATTGCTCTGAGCGTGACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCT
TCAGCATGTATGACCTGGATGGCAATGGCTACATCAGCCGGGAGGAGATGCTAGAAATTGTGCA
GGCCATTTACAAGATGGTTTCGTCCGTGATGAAAATGCCCGAGGATGAGTCGACCCCGGAAAAG
AGGACTGAGAAAATCTTCCGCCAAATGGACACAAACAATGACGGCAAGCTGTCGCTGGAGGAGT
TCATCCGCGGAGCCAAAAGCGACCCATCCATCGTGCGCCTGCTGCAGTGTGATCCCAGCAGCGC
CTCCCAGTTCTGAGCTGAGAGGAGCCAGCTCGCCTCCCTGCCTTCACCGGCCCTCCGGCTCTCA
GCTTCCTCTCCCTCGTGTCTATCCAGGCTGGGGGCCAGACTGGGGATCCCTTTCTGGGGTCTGC
ACTGTGTGTGTGTGTGGGCCTCTGGAGAAGTGAAACCTGCAAGGAAGGGGCTAAGCAAGACAGC
TGTTAGTCTCCACGGCCCAAGAGGCAGAATCTCCCTTAGTGGGACCGAGATAGCCCTCCGGTCA
GGTTCTGTATTCTTTAGTGAGACAGCTGGATCATCTTACACCCACCCACAGTCAGGAGGATCTT
CCACAACACGGGGGCAGGGGGGCGGGTAGGTCCCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGT
GGGGAGTCATGCCAAGGTGAAGAGTCTTTTTGTTTGGTGGGGAGCCACGGATGATTTCTGGGCT
GTGGGGCTTTGAAGAAGTTCCCTGATCTACTTCCCTGCAGAAGAACACTTCTTGTCCCAGCTCT
TGCTGGCTGGAGGCCATGGTAAAACAAAACAAAACTCCCAGGATTCCAACTGGGGGTCCCCAAA
CTCAACCTGCCTCTTTGCACTTAGATAACCACAGATTTACCCCGTCTGTACTCTGTATTTCACC
TCTCTCTCTCGTGCACTCACGCAAACACACACACACACACACACACACACACACACACACACAC
ACACACAGAGGCCCACAGACAGATGGGCAGAGCCCCTCCACAGCATTCTGTGTGGGAAGGAAGC
GCAGGCCCCCGGCCAAGCCCCATGTCCCTCTGCATGCAGCCACACGGAGCATCTTGGTTCTTTT
TAATAACTTCAAAATAAAGTCTTGTTTCAGTGCATTGTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001286081 ⟹ NP_001273010

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,728 (-)	NCBI
GRCm38	4	129,111,570 - 129,121,925 (-)	NCBI
Celera	4	127,451,594 - 127,462,047 (-)	NCBI

Sequence:

show sequence

TTCCGTTCTCGCAGGTCACGGCCTGCACTCACAGAGGCTAGGAGAGGAGAGGAGAGGGTTCCTT
GCCTGGAGGAGTACTGGGAAGAGCTAGGTGGGACTTGGCTCTTCTGCCATGGGCAAGCAGAACA
GCAAGCTGCGGCCAGAGATGCTGCAGGACCTGCGAGAGAACACGGAGTTCTCTGAGCTGGAGCT
ACAGGAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTC
AAGAAGATCTACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCC
GCACCTTTGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGCGT
GACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGATGGC
AATGGCTACATCAGCCGGGAGGAGATGCTAGAAATTGTGCAGGCCATTTACAAGATGGTTTCGT
CCGTGATGAAAATGCCCGAGGATGAGTCGACCCCGGAAAAGAGGACTGAGAAAATCTTCCGCCA
AATGGACACAAACAATGACGGCAAGCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAAAAGCGAC
CCATCCATCGTGCGCCTGCTGCAGTGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCTGAGAGGA
GCCAGCTCGCCTCCCTGCCTTCACCGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGTGTCTATC
CAGGCTGGGGGCCAGACTGGGGATCCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTGGGCCTCT
GGAGAAGTGAAACCTGCAAGGAAGGGGCTAAGCAAGACAGCTGTTAGTCTCCACGGCCCAAGAG
GCAGAATCTCCCTTAGTGGGACCGAGATAGCCCTCCGGTCAGGTTCTGTATTCTTTAGTGAGAC
AGCTGGATCATCTTACACCCACCCACAGTCAGGAGGATCTTCCACAACACGGGGGCAGGGGGGC
GGGTAGGTCCCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGA
GTCTTTTTGTTTGGTGGGGAGCCACGGATGATTTCTGGGCTGTGGGGCTTTGAAGAAGTTCCCT
GATCTACTTCCCTGCAGAAGAACACTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCATGGTAAA
ACAAAACAAAACTCCCAGGATTCCAACTGGGGGTCCCCAAACTCAACCTGCCTCTTTGCACTTA
GATAACCACAGATTTACCCCGTCTGTACTCTGTATTTCACCTCTCTCTCTCGTGCACTCACGCA
AACACACACACACACACACACACACACACACACACACACACACACACAGAGGCCCACAGACAGA
TGGGCAGAGCCCCTCCACAGCATTCTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAAGCCCCAT
GTCCCTCTGCATGCAGCCACACGGAGCATCTTGGTTCTTTTTAATAACTTCAAAATAAAGTCTT
GTTTCAGTGCATTGTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001286083 ⟹ NP_001273012

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,516 (-)	NCBI
GRCm38	4	129,111,570 - 129,120,172 (-)	NCBI
Celera	4	127,451,594 - 127,462,047 (-)	NCBI

Sequence:

show sequence

GACCTTTTGAAACCGGAGAAAAGGTGGGACTTGGCTCTTCTGCCATGGGCAAGCAGAACAGCAA
GCTGCGGCCAGAGATGCTGCAGGACCTGCGAGAGAACACGGAGTTCTCTGAGCTGGAGCTACAG
GAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTCAAGA
AGATCTACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCAC
CTTTGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGCGTGACC
TCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGATGGCAATG
GCTACATCAGCCGGGAGGAGATGCTAGAAATTGTGCAGGCCATTTACAAGATGGTTTCGTCCGT
GATGAAAATGCCCGAGGATGAGTCGACCCCGGAAAAGAGGACTGAGAAAATCTTCCGCCAAATG
GACACAAACAATGACGGCAAGCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAAAAGCGACCCAT
CCATCGTGCGCCTGCTGCAGTGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCTGAGAGGAGCCA
GCTCGCCTCCCTGCCTTCACCGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGTGTCTATCCAGG
CTGGGGGCCAGACTGGGGATCCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTGGGCCTCTGGAG
AAGTGAAACCTGCAAGGAAGGGGCTAAGCAAGACAGCTGTTAGTCTCCACGGCCCAAGAGGCAG
AATCTCCCTTAGTGGGACCGAGATAGCCCTCCGGTCAGGTTCTGTATTCTTTAGTGAGACAGCT
GGATCATCTTACACCCACCCACAGTCAGGAGGATCTTCCACAACACGGGGGCAGGGGGGCGGGT
AGGTCCCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGAGTCT
TTTTGTTTGGTGGGGAGCCACGGATGATTTCTGGGCTGTGGGGCTTTGAAGAAGTTCCCTGATC
TACTTCCCTGCAGAAGAACACTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCATGGTAAAACAA
AACAAAACTCCCAGGATTCCAACTGGGGGTCCCCAAACTCAACCTGCCTCTTTGCACTTAGATA
ACCACAGATTTACCCCGTCTGTACTCTGTATTTCACCTCTCTCTCTCGTGCACTCACGCAAACA
CACACACACACACACACACACACACACACACACACACACACACAGAGGCCCACAGACAGATGGG
CAGAGCCCCTCCACAGCATTCTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAAGCCCCATGTCC
CTCTGCATGCAGCCACACGGAGCATCTTGGTTCTTTTTAATAACTTCAAAATAAAGTCTTGTTT
CAGTGCATTGTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001421088 ⟹ NP_001408017

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,516 (-)	NCBI

RefSeq Acc Id:

NM_001421089 ⟹ NP_001408018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,899 (-)	NCBI

RefSeq Acc Id:

NM_001421090 ⟹ NP_001408019

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,899 (-)	NCBI

RefSeq Acc Id:

NM_001421091 ⟹ NP_001408020

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,899 (-)	NCBI

RefSeq Acc Id:

NM_001421092 ⟹ NP_001408021

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,050 (-)	NCBI

RefSeq Acc Id:

NM_010471 ⟹ NP_034601

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,050 (-)	NCBI
GRCm38	4	129,111,570 - 129,121,303 (-)	NCBI
MGSCv37	4	128,788,819 - 128,798,984 (-)	RGD
Celera	4	127,451,594 - 127,462,047 (-)	NCBI
cM Map	4		ENTREZGENE

Sequence:

show sequence

GCCCGCCCCTCCGGCCGCCTCTGCCGCCGCGCGCCGCAGCAGCGCCGCCTTCTCTGCGCAGTCG
GTGTCTCGGCGTTGCTGGGTGGGACTTGGCTCTTCTGCCATGGGCAAGCAGAACAGCAAGCTGC
GGCCAGAGATGCTGCAGGACCTGCGAGAGAACACGGAGTTCTCTGAGCTGGAGCTACAGGAGTG
GTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTCAAGAAGATC
TACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCACCTTTG
ACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGCGTGACCTCGCG
TGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGATGGCAATGGCTAC
ATCAGCCGGGAGGAGATGCTAGAAATTGTGCAGGCCATTTACAAGATGGTTTCGTCCGTGATGA
AAATGCCCGAGGATGAGTCGACCCCGGAAAAGAGGACTGAGAAAATCTTCCGCCAAATGGACAC
AAACAATGACGGCAAGCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAAAAGCGACCCATCCATC
GTGCGCCTGCTGCAGTGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCTGAGAGGAGCCAGCTCG
CCTCCCTGCCTTCACCGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGTGTCTATCCAGGCTGGG
GGCCAGACTGGGGATCCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTGGGCCTCTGGAGAAGTG
AAACCTGCAAGGAAGGGGCTAAGCAAGACAGCTGTTAGTCTCCACGGCCCAAGAGGCAGAATCT
CCCTTAGTGGGACCGAGATAGCCCTCCGGTCAGGTTCTGTATTCTTTAGTGAGACAGCTGGATC
ATCTTACACCCACCCACAGTCAGGAGGATCTTCCACAACACGGGGGCAGGGGGGCGGGTAGGTC
CCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGAGTCTTTTTG
TTTGGTGGGGAGCCACGGATGATTTCTGGGCTGTGGGGCTTTGAAGAAGTTCCCTGATCTACTT
CCCTGCAGAAGAACACTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCATGGTAAAACAAAACAA
AACTCCCAGGATTCCAACTGGGGGTCCCCAAACTCAACCTGCCTCTTTGCACTTAGATAACCAC
AGATTTACCCCGTCTGTACTCTGTATTTCACCTCTCTCTCTCGTGCACTCACGCAAACACACAC
ACACACACACACACACACACACACACACACACACACACAGAGGCCCACAGACAGATGGGCAGAG
CCCCTCCACAGCATTCTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAAGCCCCATGTCCCTCTG
CATGCAGCCACACGGAGCATCTTGGTTCTTTTTAATAACTTCAAAATAAAGTCTTGTTTCAGTG
CATTGTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_185239

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,019,700 (-)	NCBI

RefSeq Acc Id:

NR_185240

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,019,705 (-)	NCBI

RefSeq Acc Id:

NR_185241

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,016,336 (-)	NCBI

RefSeq Acc Id:

XM_006502775 ⟹ XP_006502838

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,894 (-)	NCBI
GRCm38	4	129,111,570 - 129,122,101 (-)	NCBI

Sequence:

show sequence

GGGGGGAGGACAGCATTTAGCTCAGGATGTAGCGATTGTTACCAGAGCTGGAGGAGGGAGAGTC
CCTTACAGGCAGGAGGAGTTGTGACCCCATCAGCGCCTCTAAGAGCAGCTGTCCTTAGTACAGA
CGGGAGGCATACCCACCTGAGCACCCCCACCTCCCAAGGTGGAGATGCTTCCGTTCTCGCAGGT
CACGGCCTGCACTCACAGAGGCTAGGAGAGGAGAGGAGAGGGTTCCTTGCCTGGAGGAGTACTG
GGAAGAGCTAGAGAGCCCCCAGTTCATCTGGCTCGGGAGTTGAGGTGCGGGGGCAGCGAGGGTG
CCTATCGGATTCCTCCCTCAGAGCGACAGGCGGCCCTGCGCCCAGTCCCGCCCGCCCCTCCGGC
CGCCTCTGCCGCCGCGCGCCGCAGCAGCGCCGCCTTCTCTGCGCAGTCGGTGTCTCGGCGTTGC
TGGGTGGGACTTGGCTCTTCTGCCATGGGCAAGCAGAACAGCAAGCTGCGGCCAGAGATGCTGC
AGGACCTGCGAGAGAACACGGAGTTCTCTGAGCTGGAGCTACAGGAGTGGTACAAGGGCTTCCT
GAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTCAAGAAGATCTACGCCAACTTCTTC
CCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCACCTTTGACACCAACAGCGACG
GCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGCGTGACCTCGCGTGGCCGCCTGGAGCA
GAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGATGGCAATGGCTACATCAGCCGGGAGGAG
ATGCTAGAAATTGTGCAGGCCATTTACAAGATGGTTTCGTCCGTGATGAAAATGCCCGAGGATG
AGTCGACCCCGGAAAAGAGGACTGAGAAAATCTTCCGCCAAATGGACACAAACAATGACGGCAA
GCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAAAAGCGACCCATCCATCGTGCGCCTGCTGCAG
TGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCTGAGAGGAGCCAGCTCGCCTCCCTGCCTTCAC
CGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGTGTCTATCCAGGCTGGGGGCCAGACTGGGGAT
CCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTGGGCCTCTGGAGAAGTGAAACCTGCAAGGAAG
GGGCTAAGCAAGACAGCTGTTAGTCTCCACGGCCCAAGAGGCAGAATCTCCCTTAGTGGGACCG
AGATAGCCCTCCGGTCAGGTTCTGTATTCTTTAGTGAGACAGCTGGATCATCTTACACCCACCC
ACAGTCAGGAGGATCTTCCACAACACGGGGGCAGGGGGGCGGGTAGGTCCCCTTTGGGTGGTCC
TCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGAGTCTTTTTGTTTGGTGGGGAGCCA
CGGATGATTTCTGGGCTGTGGGGCTTTGAAGAAGTTCCCTGATCTACTTCCCTGCAGAAGAACA
CTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCATGGTAAAACAAAACAAAACTCCCAGGATTCC
AACTGGGGGTCCCCAAACTCAACCTGCCTCTTTGCACTTAGATAACCACAGATTTACCCCGTCT
GTACTCTGTATTTCACCTCTCTCTCTCGTGCACTCACGCAAACACACACACACACACACACACA
CACACACACACACACACACACACAGAGGCCCACAGACAGATGGGCAGAGCCCCTCCACAGCATT
CTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAAGCCCCATGTCCCTCTGCATGCAGCCACACGG
AGCATCTTGGTTCTTTTTAATAACTTCAAAATAAAGTCTTGTTTCAGTGCATTGTA

hide sequence

RefSeq Acc Id:

XM_030253224 ⟹ XP_030109084

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,019,712 (-)	NCBI
GRCm38	4	129,111,570 - 129,125,919 (-)	NCBI

Sequence:

show sequence

CCCGTGTAGAATGAGCTGGACTTGGGGAGATAGCAGATGCAAGTCCACAGGAAGGAGGGTCCTG
GGTGTGGTGGAGTCTCATCGGGCTTCTTGGCTGGCTGGCGGAGGACAAGCTGCAGGATGCTCCG
GTGAGCTGCTGCACAGGAAGGAGTCAGACCCTCTATTTAAGACAACAAAGACTTCCGGTCTCAC
CTGAACTGCAATCTGAAGTGTTCATCGCTCTACCACTGCTCCAGTCTGTCTCCAGATTGCTTAC
CTAACACACTCCAGAACTGATTACGCATGCTACGTTCTTCTGCACGTGTGTTATATATATCATT
GTTTCTTCTACATGATTGCAATCCCCTGTCTGAAACCATGCCAAGTGCAGAAGCAATGCCTGGA
AAATCTTTTTGAAATGGATGAACGGCAGCTCCTGATTTCAAATCACTCGCTAGCTGCCAGACAT
TGGAAGTGGAGATGCTTCCGTTCTCGCAGGTCACGGCCTGCACTCACAGAGGCTAGGAGAGGAG
AGGAGAGGGTTCCTTGCCTGGAGGAGTACTGGGAAGAGCTAGAGAGCCCCCAGTTCATCTGGCT
CGGGAGTTGAGGTGCGGGGGCAGCGAGGGTGCCTATCGGATTCCTCCCTCAGAGCGACAGGCGG
CCCTGCGCCCAGTCCCGCCCGCCCCTCCGGCCGCCTCTGCCGCCGCGCGCCGCAGCAGCGCCGC
CTTCTCTGCGCAGTCGGTGTCTCGGCGTTGCTGGGTGGGACTTGGCTCTTCTGCCATGGGCAAG
CAGAACAGCAAGCTGCGGCCAGAGATGCTGCAGGACCTGCGAGAGAACACGGAGTTCTCTGAGC
TGGAGCTACAGGAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGA
TGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCAC
GTCTTCCGCACCTTTGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCTC
TGAGCGTGACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCT
GGATGGCAATGGCTACATCAGCCGGGAGGAGATGCTAGAAATTGTGCAGGCCATTTACAAGATG
GTTTCGTCCGTGATGAAAATGCCCGAGGATGAGTCGACCCCGGAAAAGAGGACTGAGAAAATCT
TCCGCCAAATGGACACAAACAATGACGGCAAGCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAA
AAGCGACCCATCCATCGTGCGCCTGCTGCAGTGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCT
GAGAGGAGCCAGCTCGCCTCCCTGCCTTCACCGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGT
GTCTATCCAGGCTGGGGGCCAGACTGGGGATCCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTG
GGCCTCTGGAGAAGTGAAACCTGCAAGGAAGGGGCTAAGCAAGACAGCTGTTAGTCTCCACGGC
CCAAGAGGCAGAATCTCCCTTAGTGGGACCGAGATAGCCCTCCGGTCAGGTTCTGTATTCTTTA
GTGAGACAGCTGGATCATCTTACACCCACCCACAGTCAGGAGGATCTTCCACAACACGGGGGCA
GGGGGGCGGGTAGGTCCCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAG
GTGAAGAGTCTTTTTGTTTGGTGGGGAGCCACGGATGATTTCTGGGCTGTGGGGCTTTGAAGAA
GTTCCCTGATCTACTTCCCTGCAGAAGAACACTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCA
TGGTAAAACAAAACAAAACTCCCAGGATTCCAACTGGGGGTCCCCAAACTCAACCTGCCTCTTT
GCACTTAGATAACCACAGATTTACCCCGTCTGTACTCTGTATTTCACCTCTCTCTCTCGTGCAC
TCACGCAAACACACACACACACACACACACACACACACACACACACACACACACAGAGGCCCAC
AGACAGATGGGCAGAGCCCCTCCACAGCATTCTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAA
GCCCCATGTCCCTCTGCATGCAGCCACACGGAGCATCTTGGTTCTTTTTAATAACTTCAAAATA
AAGTCTTGTTTCAGTGCATTGTA

hide sequence

RefSeq Acc Id:

XM_030253225 ⟹ XP_030109085

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	129,005,363 - 129,015,616 (-)	NCBI
GRCm38	4	129,111,570 - 129,121,823 (-)	NCBI

Sequence:

show sequence

GTGAGAGGTGGGATTAATTCTTAGAGGGGTTGGGGGATGACATCCGGAGTAGTAGGCAGGAGAG
GGGGGCGGGCTCTCTGAGGCGGAGGTAGCAGGGGGCGTGTCTGGCCCCTGGAAGACCTTGGGAC
TGAGCAATGGGTGCTCCCTCCTCCCTAGAGAGCCCCCAGTTCATCTGGCTCGGGAGTTGAGGTG
CGGGGGCAGCGAGGGTGCCTATCGGATTCCTCCCTCAGAGCGACAGGCGGCCCTGCGCCCAGTC
CCGCCCGCCCCTCCGGCCGCCTCTGCCGCCGCGCGCCGCAGCAGCGCCGCCTTCTCTGCGCAGT
CGGTGTCTCGGCGTTGCTGGGTGGGACTTGGCTCTTCTGCCATGGGCAAGCAGAACAGCAAGCT
GCGGCCAGAGATGCTGCAGGACCTGCGAGAGAACACGGAGTTCTCTGAGCTGGAGCTACAGGAG
TGGTACAAGGGCTTCCTGAAGGACTGCCCCACTGGCATCCTCAACGTGGATGAGTTCAAGAAGA
TCTACGCCAACTTCTTCCCCTATGGCGACGCCTCCAAGTTTGCCGAGCACGTCTTCCGCACCTT
TGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGCGTGACCTCG
CGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTATGACCTGGATGGCAATGGCT
ACATCAGCCGGGAGGAGATGCTAGAAATTGTGCAGGCCATTTACAAGATGGTTTCGTCCGTGAT
GAAAATGCCCGAGGATGAGTCGACCCCGGAAAAGAGGACTGAGAAAATCTTCCGCCAAATGGAC
ACAAACAATGACGGCAAGCTGTCGCTGGAGGAGTTCATCCGCGGAGCCAAAAGCGACCCATCCA
TCGTGCGCCTGCTGCAGTGTGATCCCAGCAGCGCCTCCCAGTTCTGAGCTGAGAGGAGCCAGCT
CGCCTCCCTGCCTTCACCGGCCCTCCGGCTCTCAGCTTCCTCTCCCTCGTGTCTATCCAGGCTG
GGGGCCAGACTGGGGATCCCTTTCTGGGGTCTGCACTGTGTGTGTGTGTGGGCCTCTGGAGAAG
TGAAACCTGCAAGGAAGGGGCTAAGCAAGACAGCTGTTAGTCTCCACGGCCCAAGAGGCAGAAT
CTCCCTTAGTGGGACCGAGATAGCCCTCCGGTCAGGTTCTGTATTCTTTAGTGAGACAGCTGGA
TCATCTTACACCCACCCACAGTCAGGAGGATCTTCCACAACACGGGGGCAGGGGGGCGGGTAGG
TCCCCTTTGGGTGGTCCTCAGCCTGGAGGGAGGTGGGGAGTCATGCCAAGGTGAAGAGTCTTTT
TGTTTGGTGGGGAGCCACGGATGATTTCTGGGCTGTGGGGCTTTGAAGAAGTTCCCTGATCTAC
TTCCCTGCAGAAGAACACTTCTTGTCCCAGCTCTTGCTGGCTGGAGGCCATGGTAAAACAAAAC
AAAACTCCCAGGATTCCAACTGGGGGTCCCCAAACTCAACCTGCCTCTTTGCACTTAGATAACC
ACAGATTTACCCCGTCTGTACTCTGTATTTCACCTCTCTCTCTCGTGCACTCACGCAAACACAC
ACACACACACACACACACACACACACACACACACACACACAGAGGCCCACAGACAGATGGGCAG
AGCCCCTCCACAGCATTCTGTGTGGGAAGGAAGCGCAGGCCCCCGGCCAAGCCCCATGTCCCTC
TGCATGCAGCCACACGGAGCATCTTGGTTCTTTTTAATAACTTCAAAATAAAGTCTTGTTTCAG
TGCATTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001123891	(Get FASTA)	NCBI Sequence Viewer
	NP_001273010	(Get FASTA)	NCBI Sequence Viewer
	NP_001273012	(Get FASTA)	NCBI Sequence Viewer
	NP_001408017	(Get FASTA)	NCBI Sequence Viewer
	NP_001408018	(Get FASTA)	NCBI Sequence Viewer
	NP_001408019	(Get FASTA)	NCBI Sequence Viewer
	NP_001408020	(Get FASTA)	NCBI Sequence Viewer
	NP_001408021	(Get FASTA)	NCBI Sequence Viewer
	NP_034601	(Get FASTA)	NCBI Sequence Viewer
	XP_006502838	(Get FASTA)	NCBI Sequence Viewer
	XP_030109084	(Get FASTA)	NCBI Sequence Viewer
	XP_030109085	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH49607	(Get FASTA)	NCBI Sequence Viewer
	AAH58588	(Get FASTA)	NCBI Sequence Viewer
	AAL37397	(Get FASTA)	NCBI Sequence Viewer
	AAL37398	(Get FASTA)	NCBI Sequence Viewer
	BAA74455	(Get FASTA)	NCBI Sequence Viewer
	BAB22502	(Get FASTA)	NCBI Sequence Viewer
	EDL30215	(Get FASTA)	NCBI Sequence Viewer
	EDL30216	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000030572
	ENSMUSP00000030572.4
	ENSMUSP00000093486.4
	ENSMUSP00000112143
	ENSMUSP00000112143.3
	ENSMUSP00000112145
	ENSMUSP00000112145.3
	ENSMUSP00000115031.2
	ENSMUSP00000115619.2
	ENSMUSP00000119178
	ENSMUSP00000119178.3
	ENSMUSP00000120655.2
	ENSMUSP00000129548
	ENSMUSP00000129548.2
GenBank Protein	P84075	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_034601 ⟸ NM_010471
- Peptide Label:	isoform 1
- UniProtKB:	A2A7R4 (UniProtKB/Swiss-Prot), P84075 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	NP_001123891 ⟸ NM_001130419
- Peptide Label:	isoform 1
- UniProtKB:	A2A7R4 (UniProtKB/Swiss-Prot), P84075 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	NP_001273010 ⟸ NM_001286081
- Peptide Label:	isoform 1
- UniProtKB:	A2A7R4 (UniProtKB/Swiss-Prot), P84075 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	NP_001273012 ⟸ NM_001286083
- Peptide Label:	isoform 1
- UniProtKB:	A2A7R4 (UniProtKB/Swiss-Prot), P84075 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	XP_006502838 ⟸ XM_006502775
- Peptide Label:	isoform X1
- UniProtKB:	A2A7R4 (UniProtKB/Swiss-Prot), P84075 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	XP_030109084 ⟸ XM_030253224
- Peptide Label:	isoform X1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_030109085 ⟸ XM_030253225
- Peptide Label:	isoform X1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot), E9PV73 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000115031 ⟸ ENSMUST00000125931

Ensembl Acc Id:

ENSMUSP00000119178 ⟸ ENSMUST00000139450

Ensembl Acc Id:

ENSMUSP00000129548 ⟸ ENSMUST00000164649

Ensembl Acc Id:

ENSMUSP00000115619 ⟸ ENSMUST00000149763

Ensembl Acc Id:

ENSMUSP00000120655 ⟸ ENSMUST00000135763

Ensembl Acc Id:

ENSMUSP00000093486 ⟸ ENSMUST00000095807

Ensembl Acc Id:

ENSMUSP00000030572 ⟸ ENSMUST00000030572

Ensembl Acc Id:

ENSMUSP00000112145 ⟸ ENSMUST00000116444

Ensembl Acc Id:

ENSMUSP00000112143 ⟸ ENSMUST00000116442

RefSeq Acc Id:	NP_001408019 ⟸ NM_001421090
- Peptide Label:	isoform 1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001408018 ⟸ NM_001421089
- Peptide Label:	isoform 1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001408020 ⟸ NM_001421091
- Peptide Label:	isoform 2

RefSeq Acc Id:	NP_001408017 ⟸ NM_001421088
- Peptide Label:	isoform 1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001408021 ⟸ NM_001421092
- Peptide Label:	isoform 1
- UniProtKB:	P84075 (UniProtKB/Swiss-Prot), A2A7R4 (UniProtKB/Swiss-Prot)

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P84075-F1-model_v2	AlphaFold	P84075	1-193	view protein structure

Promoters

RGD ID:

6884734

Promoter ID:

EPDNEW_M5818

Type:

initiation region

Name:

Hpca_1

Description:

Mus musculus hippocalcin , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	129,121,246 - 129,121,306	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1336200	AgrOrtholog
Ensembl Genes	ENSMUSG00000028785	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000030572	ENTREZGENE
	ENSMUST00000030572.10	UniProtKB/Swiss-Prot
	ENSMUST00000095807.10	UniProtKB/Swiss-Prot
	ENSMUST00000116442	ENTREZGENE
	ENSMUST00000116442.9	UniProtKB/Swiss-Prot
	ENSMUST00000116444	ENTREZGENE
	ENSMUST00000116444.10	UniProtKB/Swiss-Prot
	ENSMUST00000125931.9	UniProtKB/TrEMBL
	ENSMUST00000135763.2	UniProtKB/TrEMBL
	ENSMUST00000139450	ENTREZGENE
	ENSMUST00000139450.8	UniProtKB/Swiss-Prot
	ENSMUST00000149763.3	UniProtKB/TrEMBL
	ENSMUST00000164649	ENTREZGENE
	ENSMUST00000164649.8	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Recoverin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:15444	UniProtKB/Swiss-Prot
MGD	MGI:1336200	ENTREZGENE
NCBI Gene	15444	ENTREZGENE
PANTHER	NEURON-SPECIFIC CALCIUM-BINDING PROTEIN HIPPOCALCIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23055	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EF-hand_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hpca	PhenoGen
PRINTS	RECOVERIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	EFh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A2A7R4	ENTREZGENE
	A2A7R5_MOUSE	UniProtKB/TrEMBL
	A2A7R6_MOUSE	UniProtKB/TrEMBL
	E9PV73	ENTREZGENE, UniProtKB/TrEMBL
	HPCA_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A2A7R4	UniProtKB/Swiss-Prot
	P32076	UniProtKB/Swiss-Prot
	P41211	UniProtKB/Swiss-Prot
	P70510	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype