HPCA (hippocalcin) - Rat Genome Database

Name: HPCA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: HPCA (hippocalcin) Canis lupus familiaris

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Symbol:

HPCA

Name:

hippocalcin

RGD ID:

12181497

Description:

ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN activation of phospholipase D activity (ortholog); calcium-mediated signaling (ortholog); cellular response to electrical stimulus (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); colorectal adenocarcinoma (ortholog); Huntington's disease (ortholog); FOUND IN axon (ortholog); dendrite cytoplasm (ortholog); dendrite membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

neuron-specific calcium-binding protein hippocalcin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HPCA (hippocalcin)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HPCA (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hpca (hippocalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,464,631 - 68,473,661 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,465,280 - 68,473,310 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,045,221 - 65,053,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,030,436 - 69,038,834 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,029,808 - 69,039,028 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,841,971 - 65,850,366 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,864,436 - 66,872,823 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,856,319 - 67,864,715 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

colorectal adenocarcinoma (ISO)

Huntington's disease (ISO)

isolated growth hormone deficiency (ISO)

torsion dystonia 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of phospholipase D activity (ISO)

calcium-mediated signaling (ISO)

cellular response to calcium ion (IEA)

cellular response to electrical stimulus (ISO)

cellular response to L-glutamate (ISO)

inner ear development (IEA,ISO)

negative regulation of guanylate cyclase activity (ISO)

positive regulation of adenylate cyclase activity (ISO)

positive regulation of phospholipase activity (ISO)

positive regulation of protein targeting to membrane (ISO)

regulation of postsynaptic neurotransmitter receptor internalization (ISO)

regulation of voltage-gated calcium channel activity (ISO)

response to Aroclor 1254 (ISO)

response to ketamine (ISO)

response to L-glutamate (ISO)

response to organic cyclic compound (ISO)

retina development in camera-type eye (ISO)

Cellular Component

axon (ISO)

cytoplasm (IEA)

cytosol (IEA)

dendrite cytoplasm (ISO)

dendrite membrane (ISO)

dendritic spine head (ISO)

glutamatergic synapse (ISO)

membrane (IEA)

neuronal cell body membrane (ISO)

perikaryon (ISO)

postsynapse (ISO)

Molecular Function

actin binding (IEA)

calcium ion binding (IEA)

identical protein binding (IEA)

kinase binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HPCA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,464,631 - 68,473,661 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,465,280 - 68,473,310 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,045,221 - 65,053,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,030,436 - 69,038,834 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,029,808 - 69,039,028 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,841,971 - 65,850,366 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,864,436 - 66,872,823 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,856,319 - 67,864,715 (-)	NCBI		UU_Cfam_GSD_1.0

HPCA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,885,996 - 32,894,646 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,885,994 - 32,898,441 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	33,352,092 - 33,360,247 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	33,124,685 - 33,132,834 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	33,021,190 - 33,029,339	NCBI
Celera	1	31,620,733 - 31,628,882 (+)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	31,467,222 - 31,475,369 (+)	NCBI		HuRef
CHM1_1	1	33,467,533 - 33,475,680 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,745,769 - 32,754,441 (+)	NCBI		T2T-CHM13v2.0

Hpca
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,005,363 - 129,019,712 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,005,363 - 129,015,829 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,111,570 - 129,125,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,111,570 - 129,122,036 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	128,788,819 - 128,798,984 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,613,879 - 128,621,062 (-)	NCBI		MGSCv36	mm8
Celera	4	127,451,599 - 127,461,862 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.88	NCBI

Hpca
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,739,978 - 146,750,961 (-)	NCBI		GRCr8
mRatBN7.2	5	141,455,616 - 141,466,252 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,455,613 - 141,463,841 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,153,733 - 144,162,193 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	145,923,554 - 145,932,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	145,923,306 - 145,931,631 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,295,124 - 147,305,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,294,820 - 147,303,346 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,029,882 - 151,040,514 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,267,898 - 148,276,223 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	148,277,936 - 148,286,262 (-)	NCBI
Celera	5	139,935,623 - 139,943,977 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Hpca
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,140,373 - 11,154,261 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	11,142,282 - 11,150,798 (+)	NCBI	ChiLan1.0	ChiLan1.0

HPCA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	193,927,688 - 193,936,359 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,049,890 - 193,058,560 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	32,176,465 - 32,185,133 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	33,362,921 - 33,371,524 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	33,363,673 - 33,371,524 (+)	Ensembl	panpan1.1		panPan2

Hpca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,961,196 - 49,969,278 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,785,879 - 15,798,740 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,786,171 - 15,794,830 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HPCA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	89,188,133 - 89,197,045 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	89,187,544 - 89,197,049 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	83,214,827 - 83,224,104 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HPCA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	99,974,952 - 99,983,194 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	99,975,742 - 99,980,728 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	16,708,814 - 16,717,377 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hpca
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,990,729 - 15,999,615 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,990,910 - 15,999,617 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HPCA
84 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005617615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022411818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038461662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038470336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038470337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038470338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038531181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038531182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038531183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038595403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038595405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038595406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038659484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038659485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038659486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_849499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000016577 ⟹ ENSCAFP00000015339

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	2	68,465,280 - 68,473,310 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845009442 ⟹ ENSCAFP00845007388

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	69,029,808 - 69,038,222 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845009448 ⟹ ENSCAFP00845007392

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	69,029,808 - 69,037,725 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845009451 ⟹ ENSCAFP00845007395

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	69,029,810 - 69,039,028 (-)	Ensembl

RefSeq Acc Id:

XM_005617615 ⟹ XP_005617672

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	2	68,465,262 - 68,473,661 (-)	NCBI
Dog10K_Boxer_Tasha	2	65,045,221 - 65,053,618 (-)	NCBI

Sequence:

show sequence

GATCCCGGGCGGTAGGCAGGAGATGGGGGCGGGGCTCTCTAAGGCCGAGGTAGGGTAGGGGGCG
TGTCTTTCCCCCGAAGACCTCCGGGACCGGAGGAGTGGGCGCTGCCCCTCGCGGAAGAGCCCCC
AGCTCAATTAGTTCCCGAGTTGAGGCGCGGGGGCAGGGAAGGTGCCTATCCAACCGCCCAGGCT
CCGGATTCCGCCCGCGGAGCGACGTGCAGCTCCGCGCACAGGTGGGACTTGGCTTGGTGGCCAT
GGGCAAGCAGAACAGCAAGCTGCGGCCGGAGATGCTGCAGGACCTGCGGGAGAACACGGAGTTC
TCGGAGCTGGAGCTTCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGTCCCACGGGCATCCTCA
ACGTGGACGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTATGGTGACGCCTCTAAATTTGC
TGAGCACGTCTTCCGTACGTTCGACACCAACAGCGATGGCACCATTGACTTCCGGGAGTTCATC
ATCGCGCTGAGTGTGACCTCACGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGT
ATGACCTGGATGGCAACGGCTACATCAGCCGCGAGGAGATGCTCGAGATTGTGCAGGCCATTTA
CAAGATGGTTTCGTCCGTAATGAAGATGCCGGAGGACGAGTCGACCCCAGAAAAGAGGACCGAG
AAGATCTTCCGCCAAATGGACACGAACAACGACGGCAAGCTGTCCCTGGAGGAGTTCATCCGCG
GAGCCAAAAGCGACCCGTCCATCGTGCGTCTGCTGCAGTGCGACCCCAGCAGCGCCTCCCAGTT
CTGAGCGAGAGGACCCAGGTTCCCCCTCCTCCCTGCCTTCACTGGCCCTCTCCCGGCTCTCAGC
TTCCTCTCCCTTGTGTCTGTCCAGCCTGGGGGTCAGACTGGGCTCCCCCAGGGCCTGCATTCCG
GGGTCTATGGAGAAGGGAACCCCGCGGTAGCCCCAATGCCCAAGCAAGCAAGCGGTCAGCACCT
CCCGTCGAGGCA

hide sequence

RefSeq Acc Id:

XM_038461662 ⟹ XP_038317590

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	2	65,045,221 - 65,052,785 (-)	NCBI

RefSeq Acc Id:

XM_038470336 ⟹ XP_038326264

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	2	65,841,971 - 65,849,789 (-)	NCBI

RefSeq Acc Id:

XM_038470337 ⟹ XP_038326265

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	2	65,841,971 - 65,849,538 (-)	NCBI

RefSeq Acc Id:

XM_038470338 ⟹ XP_038326266

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	2	65,841,971 - 65,850,366 (-)	NCBI

RefSeq Acc Id:

XM_038531181 ⟹ XP_038387109

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	2	67,856,319 - 67,864,138 (-)	NCBI

RefSeq Acc Id:

XM_038531182 ⟹ XP_038387110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	2	67,856,319 - 67,863,885 (-)	NCBI

RefSeq Acc Id:

XM_038531183 ⟹ XP_038387111

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	2	67,856,319 - 67,864,715 (-)	NCBI

RefSeq Acc Id:

XM_038595403 ⟹ XP_038451331

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	2	66,864,436 - 66,871,991 (-)	NCBI

RefSeq Acc Id:

XM_038595405 ⟹ XP_038451333

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	2	66,864,436 - 66,872,823 (-)	NCBI

RefSeq Acc Id:

XM_038595406 ⟹ XP_038451334

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	2	66,864,436 - 66,872,278 (-)	NCBI

RefSeq Acc Id:

XM_038659484 ⟹ XP_038515412

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	2	69,030,436 - 69,038,257 (-)	NCBI

RefSeq Acc Id:

XM_038659485 ⟹ XP_038515413

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	2	69,030,436 - 69,038,004 (-)	NCBI

RefSeq Acc Id:

XM_038659486 ⟹ XP_038515414

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	2	69,030,436 - 69,038,834 (-)	NCBI

RefSeq Acc Id:

XM_849499 ⟹ XP_854592

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	2	68,464,631 - 68,473,105 (-)	NCBI
Dog10K_Boxer_Tasha	2	65,045,221 - 65,053,040 (-)	NCBI

Sequence:

show sequence

GCAGTCCCTCCCCCCGCCCCCCGCCCGCCCCTCCGGCCGCCTCTGCCGCCGCGCGCCGCAGCAG
CGCCGCCTTCCCTGCGCAGTCGGTGTCTCCGCGTCGCTGGGTGGGACTTGGCTTGGTGGCCATG
GGCAAGCAGAACAGCAAGCTGCGGCCGGAGATGCTGCAGGACCTGCGGGAGAACACGGAGTTCT
CGGAGCTGGAGCTTCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGTCCCACGGGCATCCTCAA
CGTGGACGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTATGGTGACGCCTCTAAATTTGCT
GAGCACGTCTTCCGTACGTTCGACACCAACAGCGATGGCACCATTGACTTCCGGGAGTTCATCA
TCGCGCTGAGTGTGACCTCACGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTA
TGACCTGGATGGCAACGGCTACATCAGCCGCGAGGAGATGCTCGAGATTGTGCAGGCCATTTAC
AAGATGGTTTCGTCCGTAATGAAGATGCCGGAGGACGAGTCGACCCCAGAAAAGAGGACCGAGA
AGATCTTCCGCCAAATGGACACGAACAACGACGGCAAGCTGTCCCTGGAGGAGTTCATCCGCGG
AGCCAAAAGCGACCCGTCCATCGTGCGTCTGCTGCAGTGCGACCCCAGCAGCGCCTCCCAGTTC
TGAGCGAGAGGACCCAGGTTCCCCCTCCTCCCTGCCTTCACTGGCCCTCTCCCGGCTCTCAGCT
TCCTCTCCCTTGTGTCTGTCCAGCCTGGGGGTCAGACTGGGCTCCCCCAGGGCCTGCATTCCGG
GGTCTATGGAGAAGGGAACCCCGCGGTAGCCCCAATGCCCAAGCAAGCAAGCGGTCAGCACCTC
CCGTCGAGGCAGTAGCTCCCTGAGGCCGTGGTTGAGACGCAGGCTCTGGCTGGGTCAGCCTTCT
CTTACCATTCTCCTGCCCCCCCCCACCCCGCCCCTACCCGCAGCCTCAAGCTCCTCCCCGAGCC
CCCACCCAGCTCTAGTAGCTCTCCGTTAGGGTGGAGGGGGAATCATGCCCAGGTGAGGAGGCTG
TCTTCATTTGGAAAGAAGAGAAGGATTCCAGAGGTGTTTGAGGAAAAAGCTTCCTTGAGCAGTC
CTTCCCTGCAGGAAGGCCTCAACTCTTCCTGTTCCGCTGCTTTTGTCGGGCCTGGAGGCCAGGA
TGCAAAGGAGAACCTCCCAGTCCAGCCTCCCAGCTGTGGGTCCCATGAACCCCTACCTGCCTTT
CAGCACTTGGATGAACACAGACCCACTGATCCTTCTGTGTAGTTTTCCTCTCTCAGACACACAC
ATGCACACACACACACACACACACACACACACAGGCCCACGGATGGGCAGACACACCCAGAGCC
CCACCCACAGCATCCTGTGTGGGAAAGAAGCACAGGCCCCCTGGCCAAGTCCCCGCCCCTGCTG
CATGCATCCATGTGGAGCATCTCTGTTCTTTTTAATAACTTCAGAATAAAGTCTCATTTCAGCG
CA

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Protein Sequences


Protein RefSeqs	XP_005617672	(Get FASTA)	NCBI Sequence Viewer
	XP_038317590	(Get FASTA)	NCBI Sequence Viewer
	XP_038326264	(Get FASTA)	NCBI Sequence Viewer
	XP_038326265	(Get FASTA)	NCBI Sequence Viewer
	XP_038326266	(Get FASTA)	NCBI Sequence Viewer
	XP_038387109	(Get FASTA)	NCBI Sequence Viewer
	XP_038387110	(Get FASTA)	NCBI Sequence Viewer
	XP_038387111	(Get FASTA)	NCBI Sequence Viewer
	XP_038451331	(Get FASTA)	NCBI Sequence Viewer
	XP_038451333	(Get FASTA)	NCBI Sequence Viewer
	XP_038451334	(Get FASTA)	NCBI Sequence Viewer
	XP_038515412	(Get FASTA)	NCBI Sequence Viewer
	XP_038515413	(Get FASTA)	NCBI Sequence Viewer
	XP_038515414	(Get FASTA)	NCBI Sequence Viewer
	XP_854592	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000015339.3
	ENSCAFP00000072736.1
	ENSCAFP00000073969.1
	ENSCAFP00030024930.1
	ENSCAFP00845007388
	ENSCAFP00845007388.1
	ENSCAFP00845007392.1
	ENSCAFP00845007395.1

RefSeq Acc Id:	XP_854592 ⟸ XM_849499
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

RefSeq Acc Id:	XP_005617672 ⟸ XM_005617615
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKF AEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQ F hide sequence

Ensembl Acc Id:

ENSCAFP00000015339 ⟸ ENSCAFT00000016577

RefSeq Acc Id:	XP_038326266 ⟸ XM_038470338
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038326264 ⟸ XM_038470336
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038326265 ⟸ XM_038470337
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038451333 ⟸ XM_038595405
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038451334 ⟸ XM_038595406
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038451331 ⟸ XM_038595403
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038515414 ⟸ XM_038659486
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038515412 ⟸ XM_038659484
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038515413 ⟸ XM_038659485
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038317590 ⟸ XM_038461662
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038387111 ⟸ XM_038531183
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038387109 ⟸ XM_038531181
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038387110 ⟸ XM_038531182
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0LHZ4 (UniProtKB/TrEMBL), A0A8I3MZQ6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845007395 ⟸ ENSCAFT00845009451

Ensembl Acc Id:

ENSCAFP00845007388 ⟸ ENSCAFT00845009442

Ensembl Acc Id:

ENSCAFP00845007392 ⟸ ENSCAFT00845009448

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000010425	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030015512	UniProtKB/TrEMBL
	ENSCAFG00845005304	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000016577.5	UniProtKB/TrEMBL
	ENSCAFT00000100420.1	UniProtKB/TrEMBL
	ENSCAFT00000108543.1	UniProtKB/TrEMBL
	ENSCAFT00030028587.1	UniProtKB/TrEMBL
	ENSCAFT00845009442	ENTREZGENE
	ENSCAFT00845009442.1	UniProtKB/TrEMBL
	ENSCAFT00845009448.1	UniProtKB/TrEMBL
	ENSCAFT00845009451.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Recoverin	UniProtKB/TrEMBL
NCBI Gene	HPCA	ENTREZGENE
PANTHER	NEURON-SPECIFIC CALCIUM-BINDING PROTEIN HIPPOCALCIN	UniProtKB/TrEMBL
	PTHR23055	UniProtKB/TrEMBL
Pfam	EF-hand_1	UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/TrEMBL
PRINTS	RECOVERIN	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C0LHZ4	ENTREZGENE
	A0A8C0RKX5_CANLF	UniProtKB/TrEMBL
	A0A8I3MVD1_CANLF	UniProtKB/TrEMBL
	A0A8I3MY83_CANLF	UniProtKB/TrEMBL
	A0A8I3MZQ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PQD5_CANLF	UniProtKB/TrEMBL
	A0A8P0TRU3_CANLF	UniProtKB/TrEMBL
UniProt Secondary	A0A8P0SFJ5	UniProtKB/TrEMBL
VGNC ID	VGNC:52136	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM