Gm57839 (predicted gene, 57839) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm57839 (predicted gene, 57839) Mus musculus
Analyze
Symbol: Gm57839 (Ensembl: Gm12796)
Name: predicted gene, 57839 (Ensembl:predicted gene 12796)
RGD ID: 39128717
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC118568677; uncharacterized LOC118568677
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394101,164,438 - 101,178,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4101,148,490 - 101,178,942 (-)EnsemblGRCm39 Ensembl
Cytogenetic Map4C6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Gm57839
913 total Variants

1 to 10 of 81 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse

1 to 10 of 81 rows






Ensembl Acc Id: ENSMUST00000131864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,611 - 101,178,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,148,490 - 101,150,487 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,092 - 101,162,259 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,173,547 - 101,178,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,148,515 - 101,150,449 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,091 - 101,150,698 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,092 - 101,150,686 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,092 - 101,150,416 (-)Ensembl
Ensembl Acc Id: ENSMUST00000374435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4101,149,091 - 101,150,048 (-)Ensembl
RefSeq Acc Id: XR_004942132
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394101,173,547 - 101,178,952 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942133
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394101,174,366 - 101,176,082 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942134
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394101,164,438 - 101,178,855 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085721 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000374430 ENTREZGENE
MGD MGI:7512626 ENTREZGENE
NCBI Gene LOC118568677 ENTREZGENE
PhenoGen Gm57839 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-22 Gm57839  predicted gene, 57839  LOC118568677  uncharacterized LOC118568677  Symbol and/or name change 5135510 APPROVED