Thrap3 (thyroid hormone receptor associated protein 3) - Rat Genome Database

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Gene: Thrap3 (thyroid hormone receptor associated protein 3) Mus musculus
Analyze
Symbol: Thrap3
Name: thyroid hormone receptor associated protein 3
RGD ID: 1314566
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and transcription coactivator activity. Involved in circadian rhythm. Part of mediator complex. Is expressed in several structures, including brain; branchial arch; genitourinary system; limb; and retina nuclear layer. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9330151F09Rik; B230333E16Rik; MGC116673; MGC37192; MGC56927; MGC98683; thyroid hormone receptor-associated protein 3; thyroid hormone receptor-associated protein complex 150 kDa component; Trap; Trap150
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm15204   Gm5386   Gm5898   Gm9544  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,057,875 - 126,096,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,057,875 - 126,096,553 (-)EnsemblGRCm39 Ensembl
GRCm384126,164,082 - 126,202,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,164,082 - 126,202,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv374125,841,326 - 125,879,954 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,666,386 - 125,705,014 (-)NCBIMGSCv36mm8
Celera4124,494,707 - 124,533,630 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12093747   PMID:12433684   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15226823   PMID:15340084   PMID:15489334   PMID:15582152   PMID:15782199   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:17967808   PMID:18287559  
PMID:18799693   PMID:20059953   PMID:20064376   PMID:21267068   PMID:21565611   PMID:21677750   PMID:21779340   PMID:21873635   PMID:23525231   PMID:24043798   PMID:24457600   PMID:25316675  
PMID:25859222   PMID:26370502   PMID:28378742   PMID:28671696   PMID:28770354   PMID:28784777   PMID:29459677   PMID:30409884   PMID:30457570   PMID:31138677   PMID:35012549   PMID:36417873  
PMID:37142655   PMID:37253089   PMID:37524868   PMID:37549548  


Genomics

Comparative Map Data
Thrap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,057,875 - 126,096,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,057,875 - 126,096,553 (-)EnsemblGRCm39 Ensembl
GRCm384126,164,082 - 126,202,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,164,082 - 126,202,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv374125,841,326 - 125,879,954 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,666,386 - 125,705,014 (-)NCBIMGSCv36mm8
Celera4124,494,707 - 124,533,630 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.0NCBI
THRAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,207,637 - 36,305,357 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,224,432 - 36,305,357 (+)EnsemblGRCh38hg38GRCh38
GRCh37136,690,044 - 36,770,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,462,634 - 36,542,744 (+)NCBINCBI36Build 36hg18NCBI36
Build 34136,359,139 - 36,439,250NCBI
Celera134,964,545 - 35,046,052 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,807,055 - 34,887,168 (+)NCBIHuRef
CHM1_1136,806,468 - 36,887,127 (+)NCBICHM1_1
T2T-CHM13v2.0136,070,513 - 36,168,203 (+)NCBIT2T-CHM13v2.0
Thrap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,729,821 - 143,772,105 (-)NCBIGRCr8
mRatBN7.25138,445,284 - 138,487,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,445,295 - 138,487,477 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,155,912 - 141,197,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,925,930 - 142,967,189 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,927,076 - 142,968,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,178,248 - 144,221,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,179,023 - 144,221,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,946,994 - 147,989,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,522,324 - 145,564,573 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,532,317 - 145,574,566 (-)NCBI
Celera5136,956,219 - 136,997,576 (-)NCBICelera
Cytogenetic Map5q36NCBI
Thrap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,233,155 - 14,283,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,233,155 - 14,282,521 (+)NCBIChiLan1.0ChiLan1.0
THRAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,539,319 - 190,638,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,661,354 - 189,740,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,492,918 - 35,572,896 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,679,221 - 36,742,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,719,770 - 36,741,355 (+)Ensemblpanpan1.1panPan2
THRAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,955,469 - 6,022,442 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,956,316 - 6,021,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,197,975 - 6,265,001 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,090,796 - 6,158,008 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,090,819 - 6,157,976 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,944,151 - 6,011,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,011,818 - 6,078,888 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,027,026 - 6,093,978 (-)NCBIUU_Cfam_GSD_1.0
Thrap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,867,068 - 52,924,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,691,835 - 18,749,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,691,872 - 18,749,217 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THRAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,355,667 - 92,412,330 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,350,021 - 92,412,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
THRAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,552,233 - 96,631,220 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,552,077 - 96,599,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603320,084,731 - 20,185,864 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thrap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,194,496 - 19,238,123 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,194,469 - 19,236,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2415
Count of miRNA genes:764
Interacting mature miRNAs:1019
Transcripts:ENSMUST00000080919, ENSMUST00000106141, ENSMUST00000106142, ENSMUST00000123008, ENSMUST00000124327, ENSMUST00000130334, ENSMUST00000130477, ENSMUST00000136157, ENSMUST00000140390, ENSMUST00000142125, ENSMUST00000151728, ENSMUST00000154702, ENSMUST00000163176, ENSMUST00000163306, ENSMUST00000163459, ENSMUST00000168568, ENSMUST00000169403, ENSMUST00000169855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK034044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB855884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY327148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000080919   ⟹   ENSMUSP00000079722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,057,875 - 126,096,553 (-)Ensembl
GRCm38.p6 Ensembl4126,164,082 - 126,202,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106141   ⟹   ENSMUSP00000101747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,080,289 - 126,096,183 (-)Ensembl
GRCm38.p6 Ensembl4126,186,496 - 126,202,390 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106142   ⟹   ENSMUSP00000101748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,066,636 - 126,096,382 (-)Ensembl
GRCm38.p6 Ensembl4126,172,843 - 126,202,589 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123008   ⟹   ENSMUSP00000131956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,074,356 - 126,088,184 (-)Ensembl
GRCm38.p6 Ensembl4126,180,563 - 126,194,391 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,087,709 - 126,096,463 (-)Ensembl
GRCm38.p6 Ensembl4126,193,916 - 126,202,670 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130334   ⟹   ENSMUSP00000120455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,080,277 - 126,096,440 (-)Ensembl
GRCm38.p6 Ensembl4126,186,484 - 126,202,647 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,079,858 - 126,096,416 (-)Ensembl
GRCm38.p6 Ensembl4126,186,065 - 126,202,623 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136157   ⟹   ENSMUSP00000120140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,074,584 - 126,094,910 (-)Ensembl
GRCm38.p6 Ensembl4126,180,791 - 126,201,117 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,057,879 - 126,062,242 (-)Ensembl
GRCm38.p6 Ensembl4126,164,086 - 126,168,449 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142125   ⟹   ENSMUSP00000118414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,080,283 - 126,096,169 (-)Ensembl
GRCm38.p6 Ensembl4126,186,490 - 126,202,376 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,072,567 - 126,096,405 (-)Ensembl
GRCm38.p6 Ensembl4126,178,774 - 126,202,612 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,059,348 - 126,061,269 (-)Ensembl
GRCm38.p6 Ensembl4126,165,555 - 126,167,476 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163176   ⟹   ENSMUSP00000129416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,060,841 - 126,067,320 (-)Ensembl
GRCm38.p6 Ensembl4126,167,048 - 126,173,527 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163306   ⟹   ENSMUSP00000126399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,069,159 - 126,072,319 (-)Ensembl
GRCm38.p6 Ensembl4126,175,366 - 126,178,526 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163459   ⟹   ENSMUSP00000129775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,059,334 - 126,069,240 (-)Ensembl
GRCm38.p6 Ensembl4126,165,541 - 126,175,447 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,080,039 - 126,096,452 (-)Ensembl
GRCm38.p6 Ensembl4126,186,246 - 126,202,659 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169403   ⟹   ENSMUSP00000125856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,074,593 - 126,096,382 (-)Ensembl
GRCm38.p6 Ensembl4126,180,800 - 126,202,589 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,072,581 - 126,073,940 (-)Ensembl
GRCm38.p6 Ensembl4126,178,788 - 126,180,147 (-)Ensembl
RefSeq Acc Id: NM_001356455   ⟹   NP_001343384
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,503 (-)NCBI
GRCm384126,164,082 - 126,202,710 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356456   ⟹   NP_001343385
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,094,800 (-)NCBI
GRCm384126,164,082 - 126,201,007 (-)NCBI
Sequence:
RefSeq Acc Id: NM_146153   ⟹   NP_666265
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,503 (-)NCBI
GRCm384126,164,082 - 126,202,710 (-)ENTREZGENE
MGSCv374125,841,326 - 125,879,954 (-)RGD
Celera4124,494,707 - 124,533,630 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036164047   ⟹   XP_036019940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164048   ⟹   XP_036019941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164049   ⟹   XP_036019942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,486 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954926
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,539 (-)NCBI
GRCm384126,164,082 - 126,202,746 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954927
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,057,875 - 126,096,548 (-)NCBI
GRCm384126,164,082 - 126,202,755 (-)NCBI
Sequence:
RefSeq Acc Id: NP_666265   ⟸   NM_146153
- UniProtKB: Q569Z6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343384   ⟸   NM_001356455
- UniProtKB: Q569Z6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343385   ⟸   NM_001356456
- UniProtKB: Q569Z6 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000120455   ⟸   ENSMUST00000130334
Ensembl Acc Id: ENSMUSP00000129775   ⟸   ENSMUST00000163459
Ensembl Acc Id: ENSMUSP00000129416   ⟸   ENSMUST00000163176
Ensembl Acc Id: ENSMUSP00000126399   ⟸   ENSMUST00000163306
Ensembl Acc Id: ENSMUSP00000101748   ⟸   ENSMUST00000106142
Ensembl Acc Id: ENSMUSP00000101747   ⟸   ENSMUST00000106141
Ensembl Acc Id: ENSMUSP00000125856   ⟸   ENSMUST00000169403
Ensembl Acc Id: ENSMUSP00000079722   ⟸   ENSMUST00000080919
Ensembl Acc Id: ENSMUSP00000131956   ⟸   ENSMUST00000123008
Ensembl Acc Id: ENSMUSP00000118414   ⟸   ENSMUST00000142125
Ensembl Acc Id: ENSMUSP00000120140   ⟸   ENSMUST00000136157
RefSeq Acc Id: XP_036019942   ⟸   XM_036164049
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019941   ⟸   XM_036164048
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019940   ⟸   XM_036164047
- Peptide Label: isoform X1
- UniProtKB: Q569Z6 (UniProtKB/Swiss-Prot)
Protein Domains
Btz

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q569Z6-F1-model_v2 AlphaFold Q569Z6 1-951 view protein structure

Promoters
RGD ID:6836510
Promoter ID:MM_KWN:39629
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Lung,   MEF_B6
Transcripts:OTTMUST00000021298,   OTTMUST00000021307
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364125,844,266 - 125,846,072 (-)MPROMDB
RGD ID:6836505
Promoter ID:MM_KWN:39630
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000021306
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364125,871,071 - 125,871,571 (-)MPROMDB
RGD ID:6835270
Promoter ID:MM_KWN:39631
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   MEF_B6
Transcripts:ENSMUST00000122555,   OTTMUST00000021303
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364125,878,221 - 125,879,027 (-)MPROMDB
RGD ID:6836503
Promoter ID:MM_KWN:39632
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000071924,   OTTMUST00000021297,   OTTMUST00000021301,   OTTMUST00000021302,   OTTMUST00000021304,   OTTMUST00000021305,   UC008USW.1,   UC008USX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364125,879,181 - 125,879,932 (-)MPROMDB
RGD ID:6884640
Promoter ID:EPDNEW_M5771
Type:initiation region
Name:Thrap3_1
Description:Mus musculus thyroid hormone receptor associated protein 3 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384126,202,629 - 126,202,689EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442637 AgrOrtholog
Ensembl Genes ENSMUSG00000043962 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080919 ENTREZGENE
  ENSMUST00000080919.12 UniProtKB/Swiss-Prot
  ENSMUST00000106141.3 UniProtKB/TrEMBL
  ENSMUST00000106142.8 UniProtKB/TrEMBL
  ENSMUST00000123008.8 UniProtKB/TrEMBL
  ENSMUST00000130334.2 UniProtKB/TrEMBL
  ENSMUST00000136157.8 UniProtKB/TrEMBL
  ENSMUST00000142125.2 UniProtKB/TrEMBL
  ENSMUST00000163176.2 UniProtKB/TrEMBL
  ENSMUST00000163306.2 UniProtKB/TrEMBL
  ENSMUST00000163459.8 UniProtKB/TrEMBL
  ENSMUST00000169403.8 UniProtKB/TrEMBL
InterPro Btz_dom UniProtKB/TrEMBL
  THRAP3_BCLAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230753 UniProtKB/Swiss-Prot
MGD MGI:2442637 ENTREZGENE
NCBI Gene 230753 ENTREZGENE
PANTHER PTHR15268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15268:SF16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Btz UniProtKB/TrEMBL
  THRAP3_BCLAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Thrap3 PhenoGen
UniProt A2AJI3_MOUSE UniProtKB/TrEMBL
  A2AJI6_MOUSE UniProtKB/TrEMBL
  A2AJI7_MOUSE UniProtKB/TrEMBL
  E9Q494_MOUSE UniProtKB/TrEMBL
  E9Q5X3_MOUSE UniProtKB/TrEMBL
  E9Q6C5_MOUSE UniProtKB/TrEMBL
  F6YH92_MOUSE UniProtKB/TrEMBL
  F6YSQ2_MOUSE UniProtKB/TrEMBL
  F7AB07_MOUSE UniProtKB/TrEMBL
  Q3U503_MOUSE UniProtKB/TrEMBL
  Q569Z6 ENTREZGENE
  Q80VM0_MOUSE UniProtKB/TrEMBL
  Q8BV76_MOUSE UniProtKB/TrEMBL
  Q8BZN7_MOUSE UniProtKB/TrEMBL
  Q8R353_MOUSE UniProtKB/TrEMBL
  Q91VL2_MOUSE UniProtKB/TrEMBL
  TR150_MOUSE UniProtKB/Swiss-Prot