Thrap3 (thyroid hormone receptor associated protein 3) - Rat Genome Database

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Gene: Thrap3 (thyroid hormone receptor associated protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Thrap3
Name: thyroid hormone receptor associated protein 3
RGD ID: 12710170
Description: ENCODES a protein that exhibits DNA binding (inferred); nuclear thyroid hormone receptor binding (inferred); phosphoprotein binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN exon-exon junction complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thyroid hormone receptor associated protein 3, transcript variant X1; thyroid hormone receptor associated protein 3, transcript variant X2; thyroid hormone receptor-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,867,068 - 52,924,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,691,835 - 18,749,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,691,872 - 18,749,217 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Thrap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,867,068 - 52,924,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,691,835 - 18,749,235 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,691,872 - 18,749,217 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THRAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,207,637 - 36,305,357 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,224,432 - 36,305,357 (+)EnsemblGRCh38hg38GRCh38
GRCh37136,690,044 - 36,770,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,462,634 - 36,542,744 (+)NCBINCBI36Build 36hg18NCBI36
Build 34136,359,139 - 36,439,250NCBI
Celera134,964,545 - 35,046,052 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,807,055 - 34,887,168 (+)NCBIHuRef
CHM1_1136,806,468 - 36,887,127 (+)NCBICHM1_1
T2T-CHM13v2.0136,070,513 - 36,168,203 (+)NCBIT2T-CHM13v2.0
Thrap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,057,875 - 126,096,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,057,875 - 126,096,553 (-)EnsemblGRCm39 Ensembl
GRCm384126,164,082 - 126,202,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,164,082 - 126,202,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv374125,841,326 - 125,879,954 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,666,386 - 125,705,014 (-)NCBIMGSCv36mm8
Celera4124,494,707 - 124,533,630 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.0NCBI
Thrap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,729,821 - 143,772,105 (-)NCBIGRCr8
mRatBN7.25138,445,284 - 138,487,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,445,295 - 138,487,477 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,155,912 - 141,197,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,925,930 - 142,967,189 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,927,076 - 142,968,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,178,248 - 144,221,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,179,023 - 144,221,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,946,994 - 147,989,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,522,324 - 145,564,573 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,532,317 - 145,574,566 (-)NCBI
Celera5136,956,219 - 136,997,576 (-)NCBICelera
Cytogenetic Map5q36NCBI
Thrap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,233,155 - 14,283,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,233,155 - 14,282,521 (+)NCBIChiLan1.0ChiLan1.0
THRAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,539,319 - 190,638,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,661,354 - 189,740,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,492,918 - 35,572,896 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,679,221 - 36,742,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,719,770 - 36,741,355 (+)Ensemblpanpan1.1panPan2
THRAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,955,469 - 6,022,442 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,956,316 - 6,021,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,197,975 - 6,265,001 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,090,796 - 6,158,008 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,090,819 - 6,157,976 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,944,151 - 6,011,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,011,818 - 6,078,888 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,027,026 - 6,093,978 (-)NCBIUU_Cfam_GSD_1.0
THRAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,355,667 - 92,412,330 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,350,021 - 92,412,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
THRAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,552,233 - 96,631,220 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,552,077 - 96,599,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603320,084,731 - 20,185,864 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thrap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,194,496 - 19,238,123 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,194,469 - 19,236,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000603   ⟹   ENSSTOP00000000549
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647418,691,835 - 18,749,235 (+)Ensembl
RefSeq Acc Id: XM_005317817   ⟹   XP_005317874
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,867,068 - 52,924,436 (+)NCBI
SpeTri2.0NW_00493647418,691,872 - 18,749,217 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005317818   ⟹   XP_005317875
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,867,089 - 52,924,436 (+)NCBI
SpeTri2.0NW_00493647418,691,888 - 18,749,217 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005317874 (Get FASTA)   NCBI Sequence Viewer  
  XP_005317875 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000549.2
GenBank Protein KAG3282753 (Get FASTA)   NCBI Sequence Viewer  
  KAG3282754 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005317875   ⟸   XM_005317818
- UniProtKB: I3LX06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317874   ⟸   XM_005317817
- UniProtKB: I3LX06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000549   ⟸   ENSSTOT00000000603


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000602 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000603.3 UniProtKB/TrEMBL
InterPro THRAP3_BCLAF1 UniProtKB/TrEMBL
NCBI Gene Thrap3 ENTREZGENE
PANTHER PTHR15268 UniProtKB/TrEMBL
  PTHR15268:SF16 UniProtKB/TrEMBL
Pfam THRAP3_BCLAF1 UniProtKB/TrEMBL
UniProt I3LX06 ENTREZGENE, UniProtKB/TrEMBL