Gm12866 (predicted gene 12866) - Rat Genome Database

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Gene: Gm12866 (predicted gene 12866) Mus musculus
Analyze
Symbol: Gm12866
Name: predicted gene 12866
RGD ID: 1617157
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,911,987 - 118,926,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,911,987 - 118,929,909 (-)EnsemblGRCm39 Ensembl
GRCm384119,054,790 - 119,069,111 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,054,790 - 119,069,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,727,395 - 118,741,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,727,395 - 118,742,257 (-)NCBIMGSCv36mm8
Celera4117,780,518 - 117,796,771 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12866Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12866Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12866Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:24316575  



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Variants in Gm12866
908 total Variants

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:132
Interacting mature miRNAs:138
Transcripts:ENSMUST00000128998
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse

1 to 10 of 64 rows
UniSTS:225303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384119,058,183 - 119,058,357UniSTSGRCm38
MGSCv374118,730,788 - 118,730,962UniSTSGRCm37
Celera4117,785,632 - 117,785,804UniSTS
Cytogenetic Map4D2.1UniSTS







Ensembl Acc Id: ENSMUST00000128998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,911,987 - 118,926,324 (-)Ensembl
GRCm38.p6 Ensembl4119,054,790 - 119,069,111 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,091 - 118,929,877 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,096 - 118,929,636 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,096 - 118,926,291 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,087 - 118,929,909 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,089 - 118,929,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,089 - 118,929,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,091 - 118,929,807 (-)Ensembl
RefSeq Acc Id: NR_131914
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,911,987 - 118,926,308 (-)NCBI
GRCm384119,054,790 - 119,069,111 (-)NCBI
Sequence:
GenBank Protein BAC39122 (Get FASTA)   NCBI Sequence Viewer  



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000066060 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000128998 ENTREZGENE
InterPro Cornifin UniProtKB/TrEMBL
MGD MGI:3649462 ENTREZGENE
NCBI Gene 433751 ENTREZGENE
PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  DUF853 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
PhenoGen Gm12866 PhenoGen
RNAcentral URS000075F861 RNACentral
UniProt Q8BNB8_MOUSE UniProtKB/TrEMBL
1 to 10 of 10 rows