Gm12866 (predicted gene 12866) - Rat Genome Database

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Gene: Gm12866 (predicted gene 12866) Mus musculus
Analyze
Symbol: Gm12866
Name: predicted gene 12866
RGD ID: 1617157
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,911,987 - 118,926,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,911,987 - 118,929,909 (-)EnsemblGRCm39 Ensembl
GRCm384119,054,790 - 119,069,111 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,054,790 - 119,069,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,727,395 - 118,741,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,727,395 - 118,742,257 (-)NCBIMGSCv36mm8
Celera4117,780,518 - 117,796,771 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:132
Interacting mature miRNAs:138
Transcripts:ENSMUST00000128998
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117071971120723203Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116270979124055180Mouse

Markers in Region
UniSTS:225303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384119,058,183 - 119,058,357UniSTSGRCm38
MGSCv374118,730,788 - 118,730,962UniSTSGRCm37
Celera4117,785,632 - 117,785,804UniSTS
Cytogenetic Map4D2.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000128998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,911,987 - 118,926,324 (-)Ensembl
GRCm38.p6 Ensembl4119,054,790 - 119,069,111 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,091 - 118,929,877 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,096 - 118,929,636 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,913,096 - 118,926,291 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,087 - 118,929,909 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,089 - 118,929,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,089 - 118,929,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000301953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4118,928,091 - 118,929,807 (-)Ensembl
RefSeq Acc Id: NR_131914
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394118,911,987 - 118,926,308 (-)NCBI
GRCm384119,054,790 - 119,069,111 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC39122 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000066060 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000128998 ENTREZGENE
InterPro Cornifin UniProtKB/TrEMBL
MGD MGI:3649462 ENTREZGENE
NCBI Gene 433751 ENTREZGENE
PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  DUF853 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
PhenoGen Gm12866 PhenoGen
RNAcentral URS000075F861 RNACentral
UniProt Q8BNB8_MOUSE UniProtKB/TrEMBL