Ago4 (argonaute RISC catalytic subunit 4) - Rat Genome Database

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Gene: Ago4 (argonaute RISC catalytic subunit 4) Mus musculus
Analyze
Symbol: Ago4
Name: argonaute RISC catalytic subunit 4
RGD ID: 1312106
MGI Page MGI
Description: Enables RNA binding activity. Acts upstream of or within several processes, including male gonad development; meiotic nuclear division; and miRNA metabolic process. Located in P-body and nucleus. Part of RISC complex. Is expressed in several structures, including central nervous system; lung; sensory organ; tooth; and vibrissa. Orthologous to human AGO4 (argonaute RISC component 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730550L01Rik; AI481660; argonaute 4; argonaute RISC catalytic component 4; argonaute4; eIF-2C 4; Eif2c; eIF2C 4; Eif2c4; eukaryotic translation initiation factor 2C, 4; KIAA1567; mAgo4; Piwi/Argonaute family protein meIF2C4; protein argonaute-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,383,280 - 126,427,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,383,334 - 126,427,265 (-)EnsemblGRCm39 Ensembl
GRCm384126,489,487 - 126,533,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,489,541 - 126,533,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv374126,166,785 - 126,210,702 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,994,456 - 126,035,544 (-)NCBIMGSCv36mm8
Celera4124,826,342 - 124,870,087 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Argonaute proteins at a glance. Ender C and Meister G, J Cell Sci. 2010 Jun 1;123(Pt 11):1819-23.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12414724   PMID:12477932   PMID:12526743   PMID:14621295   PMID:16033648   PMID:16036130   PMID:16141072   PMID:16141073   PMID:19536157  
PMID:19898466   PMID:20102707   PMID:21731673   PMID:21873635   PMID:22863743   PMID:26995025   PMID:29021386   PMID:31138677   PMID:32049003   PMID:32325033   PMID:34907157  


Genomics

Comparative Map Data
Ago4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,383,280 - 126,427,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,383,334 - 126,427,265 (-)EnsemblGRCm39 Ensembl
GRCm384126,489,487 - 126,533,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,489,541 - 126,533,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv374126,166,785 - 126,210,702 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,994,456 - 126,035,544 (-)NCBIMGSCv36mm8
Celera4124,826,342 - 124,870,087 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.9NCBI
AGO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38135,807,636 - 35,857,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl135,808,016 - 35,857,890 (+)EnsemblGRCh38hg38GRCh38
GRCh37136,273,237 - 36,323,491 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,046,415 - 36,093,775 (+)NCBINCBI36Build 36hg18NCBI36
Build 34135,942,920 - 35,990,281NCBI
Celera134,548,288 - 34,595,633 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,391,417 - 34,441,140 (+)NCBIHuRef
CHM1_1136,390,239 - 36,439,851 (+)NCBICHM1_1
T2T-CHM13v2.0135,670,525 - 35,720,783 (+)NCBIT2T-CHM13v2.0
Ago4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,064,949 - 144,110,422 (-)NCBIGRCr8
mRatBN7.25138,780,446 - 138,825,898 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,783,069 - 138,825,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,477,953 - 141,523,412 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,247,944 - 143,293,406 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,248,730 - 143,294,206 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,501,875 - 144,557,165 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,504,938 - 144,556,889 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,269,991 - 148,328,500 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,857,594 - 145,902,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,866,645 - 145,932,628 (-)NCBI
Celera5137,279,250 - 137,322,143 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ago4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545213,882,416 - 13,922,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545213,882,416 - 13,922,590 (+)NCBIChiLan1.0ChiLan1.0
LOC100977537
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,990,660 - 191,040,727 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,111,850 - 190,161,908 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,072,045 - 35,122,418 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,249,040 - 36,299,259 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,249,038 - 36,299,259 (+)Ensemblpanpan1.1panPan2
AGO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,325,899 - 6,351,748 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,329,413 - 6,356,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,569,069 - 6,608,633 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,462,261 - 6,501,884 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,281,474 - 6,502,020 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,315,003 - 6,354,575 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,383,741 - 6,423,313 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,398,098 - 6,437,686 (-)NCBIUU_Cfam_GSD_1.0
Ago4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,510,754 - 52,548,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,335,531 - 18,370,077 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,335,536 - 18,371,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,973,119 - 92,012,990 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1691,967,499 - 92,013,030 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2685,255,835 - 85,296,920 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12097,001,484 - 97,056,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2097,003,566 - 97,056,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603319,672,650 - 19,725,326 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ago4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476418,838,920 - 18,883,894 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476418,838,887 - 18,883,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ago4
1467 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1084
Count of miRNA genes:642
Interacting mature miRNAs:767
Transcripts:ENSMUST00000084289, ENSMUST00000122951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse

Markers in Region
Eif2c4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D2.2UniSTS
cM Map4 UniSTS
cM Map460.9UniSTS
UniSTS:235029  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384126,489,562 - 126,489,761UniSTSGRCm38
MGSCv374126,166,806 - 126,167,005UniSTSGRCm37
Celera4124,826,363 - 124,826,562UniSTS
Cytogenetic Map4D2.2UniSTS
AI481660  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384126,489,596 - 126,489,745UniSTSGRCm38
MGSCv374126,166,840 - 126,166,989UniSTSGRCm37
Celera4124,826,397 - 124,826,546UniSTS
Cytogenetic Map4D2.2UniSTS
Whitehead/MRC_RH41634.86UniSTS
Eif2c4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D2.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB081474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI481660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV306945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY135690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB616446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000084289   ⟹   ENSMUSP00000081312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,383,334 - 126,427,265 (-)Ensembl
GRCm38.p6 Ensembl4126,489,541 - 126,533,472 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4126,409,270 - 126,410,705 (-)Ensembl
GRCm38.p6 Ensembl4126,515,477 - 126,516,912 (-)Ensembl
RefSeq Acc Id: NM_153177   ⟹   NP_694817
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,383,334 - 126,427,251 (-)NCBI
GRCm384126,489,541 - 126,533,458 (-)NCBI
MGSCv374126,166,785 - 126,210,702 (-)RGD
Celera4124,826,342 - 124,870,087 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503481   ⟹   XP_006503544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,383,280 - 126,427,379 (-)NCBI
GRCm384126,489,487 - 126,533,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503482   ⟹   XP_006503545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,391,021 - 126,427,379 (-)NCBI
GRCm384126,497,228 - 126,533,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503483   ⟹   XP_006503546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,383,358 - 126,409,642 (-)NCBI
GRCm384126,489,565 - 126,515,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164537   ⟹   XP_036020430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,390,601 - 126,427,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164538   ⟹   XP_036020431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,383,358 - 126,427,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164539   ⟹   XP_036020432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394126,383,358 - 126,405,834 (-)NCBI
Sequence:
RefSeq Acc Id: NP_694817   ⟸   NM_153177
- UniProtKB: Q6ZPM6 (UniProtKB/Swiss-Prot),   Q4VBD7 (UniProtKB/Swiss-Prot),   Q8BTF4 (UniProtKB/Swiss-Prot),   Q8CJF8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503546   ⟸   XM_006503483
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006503544   ⟸   XM_006503481
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006503545   ⟸   XM_006503482
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000081312   ⟸   ENSMUST00000084289
RefSeq Acc Id: XP_036020431   ⟸   XM_036164538
- Peptide Label: isoform X5
- UniProtKB: Q8BTF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020432   ⟸   XM_036164539
- Peptide Label: isoform X5
- UniProtKB: Q8BTF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020430   ⟸   XM_036164537
- Peptide Label: isoform X1
Protein Domains
PAZ   Piwi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CJF8-F1-model_v2 AlphaFold Q8CJF8 1-861 view protein structure

Promoters
RGD ID:6835189
Promoter ID:MM_KWN:39660
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:ENSMUST00000084286,   OTTMUST00000020903
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364126,210,604 - 126,211,104 (-)MPROMDB
RGD ID:6884654
Promoter ID:EPDNEW_M5778
Type:initiation region
Name:Ago4_1
Description:Mus musculus argonaute RISC catalytic subunit 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384126,533,447 - 126,533,507EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924100 AgrOrtholog
Ensembl Genes ENSMUSG00000042500 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000084289 ENTREZGENE
  ENSMUST00000084289.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.420.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  paz domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AGO4 UniProtKB/Swiss-Prot
  ArgoL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArgoL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Argonaute_Mid_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Argonaute_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAZ_dom UniProtKB/Swiss-Prot
  PAZ_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Piwi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Piwi_ago-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76850 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924100 ENTREZGENE
NCBI Gene 76850 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ArgoL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArgoL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArgoMid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArgoN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAZ UniProtKB/Swiss-Prot
  Piwi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ago4 PhenoGen
PROSITE PAZ UniProtKB/Swiss-Prot
  PIWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUF1785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAZ UniProtKB/Swiss-Prot
  Piwi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53098 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AGO4_MOUSE UniProtKB/Swiss-Prot
  Q4VBD7 ENTREZGENE
  Q6ZPM6 ENTREZGENE
  Q8BTF2 ENTREZGENE, UniProtKB/TrEMBL
  Q8BTF4 ENTREZGENE
  Q8CGT8_MOUSE UniProtKB/TrEMBL
  Q8CJF8 ENTREZGENE
  Q9CS58_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q4VBD7 UniProtKB/Swiss-Prot
  Q6ZPM6 UniProtKB/Swiss-Prot
  Q8BTF4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Ago4  argonaute RISC catalytic subunit 4  Eif2c4  eukaryotic translation initiation factor 2C, 4  Symbol and/or name change 5135510 APPROVED