Gm12827 (predicted gene 12827) - Rat Genome Database

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Gene: Gm12827 (predicted gene 12827) Mus musculus
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Symbol: Gm12827
Name: predicted gene 12827
RGD ID: 2294326
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
Previously known as: predicted gene, OTTMUSG00000008568
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,352,364 - 117,362,123 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,353,611 - 117,375,770 (+)EnsemblGRCm39 Ensembl
GRCm384117,495,737 - 117,509,315 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,496,452 - 117,500,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,167,925 - 117,173,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,167,925 - 117,173,207 (+)NCBIMGSCv36mm8
Celera4116,226,857 - 116,232,127 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map453.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12827Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12827Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12827Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:14610273   PMID:18799693  



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Variants in Gm12827
375 total Variants

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:93
Interacting mature miRNAs:96
Transcripts:ENSMUST00000132690
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 66 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse

1 to 10 of 66 rows





RefSeq Transcripts XM_001473094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001475794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000132690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,649 - 117,357,799 (+)Ensembl
GRCm38.p6 Ensembl4117,496,452 - 117,500,602 (+)Ensembl
Ensembl Acc Id: ENSMUST00000247276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,643 - 117,360,625 (+)Ensembl
Ensembl Acc Id: ENSMUST00000247288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,611 - 117,375,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000247342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,622 - 117,361,618 (+)Ensembl
Ensembl Acc Id: ENSMUST00000368277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,618 - 117,375,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000368278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,636 - 117,375,770 (+)Ensembl
Ensembl Acc Id: ENSMUST00000368279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,353,635 - 117,361,618 (+)Ensembl
RefSeq Acc Id: XM_001473094   ⟹   XP_001473144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera4116,226,857 - 116,232,127 (+)NCBI
RefSeq Acc Id: XM_001475794   ⟹   XP_001475844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv374117,167,925 - 117,173,207 (+)NCBI
Protein RefSeqs XP_001473144 (Get FASTA)   NCBI Sequence Viewer  
  XP_001475844 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_001473144   ⟸   XM_001473094
RefSeq Acc Id: XP_001475844   ⟸   XM_001475794

RGD ID:6835377
Promoter ID:MM_KWN:39246
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000019429,   XM_001475794_GM12827
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,166,716 - 117,167,717 (+)MPROMDB
RGD ID:15092741
Promoter ID:EPDNEWNC_M657
Type:multiple initiation site
Name:Gm12827_1
Description:predicted gene 12827 [Source:MGI Symbol;Acc:MGI:3651358]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384117,496,446 - 117,496,506EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000087228 Ensembl
MGD MGI:3651358 ENTREZGENE
NCBI Gene Gm12827 ENTREZGENE
PhenoGen Gm12827 PhenoGen
RNAcentral URS000076F42C RNACentral
  URS00025E370A RNACentral
  URS00025F17AD RNACentral
  URS00025F7344 RNACentral