Hdac1 (histone deacetylase 1) - Rat Genome Database

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Gene: Hdac1 (histone deacetylase 1) Mus musculus
Symbol: Hdac1
Name: histone deacetylase 1
RGD ID: 1320331
Description: Exhibits several functions, including E-box binding activity; Krueppel-associated box domain binding activity; and RNA polymerase II repressing transcription factor binding activity. Involved in several processes, including animal organ development; histone deacetylation; and negative regulation of signal transduction. Localizes to NuRD complex; heterochromatin; and neuronal cell body. Is expressed in several structures, including brain; early conceptus; embryo mesenchyme; genitourinary system; and sensory organ. Orthologous to human HDAC1 (histone deacetylase 1); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; histone modification pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
Also known as: HD1; Hdac1-ps; MGC102534; MGC118085; MommeD; MommeD5; RP; RPD3
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18132   Gm18139   Gm18142   Gm4864   Hdac1-ps  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm394129,409,897 - 129,436,439 (-)NCBIGRCm39mm39
GRCm39 Ensembl4129,409,897 - 129,436,506 (-)Ensembl
GRCm384129,516,104 - 129,542,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,516,104 - 129,542,713 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,193,348 - 129,219,890 (-)NCBIGRCm37mm9NCBIm37
MGSCv364129,018,408 - 129,044,950 (-)NCBImm8
Celera1782,795,228 - 82,797,813 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(20S)-ginsenoside Rh2  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3'-diindolylmethane  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
4-phenylbutyric acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
amphetamine  (EXP,ISO)
andrographolide  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
aspartame  (EXP)
benomyl  (ISO)
benzamide  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
butyric acid  (EXP,ISO)
C60 fullerene  (ISO)
caffeine  (ISO)
captan  (EXP)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
chromium atom  (EXP)
chromium(6+)  (ISO)
ciprofibrate  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
D-glucose  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
fenvalerate  (ISO)
fingolimod hydrochloride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gamma-mangostin  (ISO)
genistein  (ISO)
gentamycin  (EXP,ISO)
glucaric acid  (EXP)
glucose  (EXP)
glyphosate  (ISO)
guggulsterone  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
indole-3-methanol  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (EXP)
lithium chloride  (EXP)
lovastatin  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
methotrexate  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (EXP)
monosodium L-glutamate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
N-Vinyl-2-pyrrolidone  (ISO)
nicotinamide  (EXP)
nicotine  (ISO)
oleanolic acid  (ISO)
oxybenzone  (ISO)
paracetamol  (ISO)
pelargonidin  (EXP)
pentachlorophenol  (EXP)
phenethyl isothiocyanate  (ISO)
potassium chloride  (EXP)
progesterone  (ISO)
resveratrol  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sulforaphane  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
Tanshinone I  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
theophylline  (ISO)
thiophenes  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
warfarin  (EXP)
withaferin A  (ISO)
zileuton  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to oxidative stress  (ISO)
cellular response to tumor necrosis factor  (ISO)
chromatin organization  (TAS)
circadian regulation of gene expression  (IDA)
circadian rhythm  (IDA)
DNA methylation-dependent heterochromatin assembly  (ISO)
embryonic digit morphogenesis  (IGI)
endoderm development  (IDA,IMP)
epidermal cell differentiation  (IGI)
eyelid development in camera-type eye  (IGI)
fungiform papilla formation  (IGI)
hair follicle placode formation  (IGI)
hippocampus development  (IGI)
histone deacetylation  (ISO)
histone H3 deacetylation  (IBA,IDA,ISO)
histone H4 deacetylation  (IBA,IDA,ISO)
negative regulation by host of viral transcription  (ISO)
negative regulation of androgen receptor signaling pathway  (ISO)
negative regulation of apoptotic process  (IGI)
negative regulation of canonical Wnt signaling pathway  (IGI,ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of I-kappaB kinase/NF-kappaB signaling  (IGI)
negative regulation of insulin secretion  (ISO)
negative regulation of intrinsic apoptotic signaling pathway  (IGI)
negative regulation of myotube differentiation  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of peptidyl-lysine acetylation  (ISO)
negative regulation of transcription by RNA polymerase II  (IDA,IGI,ISO)
negative regulation of transcription, DNA-templated  (IDA,ISO)
neuron differentiation  (IGI)
odontogenesis of dentin-containing tooth  (IGI)
positive regulation of cell population proliferation  (IGI,ISO)
positive regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
positive regulation of interleukin-1 production  (ISO)
positive regulation of oligodendrocyte differentiation  (IGI,ISO)
positive regulation of signaling receptor activity  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,ISO)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
positive regulation of type B pancreatic cell apoptotic process  (ISO)
positive regulation of tyrosine phosphorylation of STAT protein  (ISO)
protein deacetylation  (ISO)
regulation of endopeptidase activity  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
response to amphetamine  (ISO)
response to caffeine  (ISO)
response to drug  (ISO)
response to hyperoxia  (ISO)
response to lipopolysaccharide  (ISO)
rhythmic process  (IEA)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal allantois morphology  (IAGP)
abnormal cell cycle  (IAGP)
abnormal coat appearance  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal eyelid morphology  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hair medulla  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal head development  (IAGP)
abnormal keratinocyte differentiation  (IAGP)
abnormal keratinocyte morphology  (IAGP)
abnormal lens morphology  (IEA)
abnormal megakaryocyte morphology  (IAGP)
abnormal mitosis  (IAGP)
abnormal nail color  (IAGP)
abnormal nail matrix morphology  (IAGP)
abnormal nail morphology  (IAGP)
abnormal periorbital region morphology  (IAGP)
abnormal retina morphology  (IEA)
abnormal retinal blood vessel morphology  (IEA)
abnormal retinal vasculature morphology  (IEA)
abnormal sebaceous gland morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal tail morphology  (IAGP)
abnormal thymus corticomedullary boundary morphology  (IAGP)
abnormal vibrissa morphology  (IAGP)
abnormal zigzag hair morphology  (IAGP)
alopecia  (IAGP)
anemia  (IAGP)
aneuploidy  (IAGP)
arrested B cell differentiation  (IAGP)
arrested T cell differentiation  (IAGP)
cataract  (IEA)
chromosomal instability  (IAGP)
decreased B cell number  (IAGP)
decreased B cell proliferation  (IAGP)
decreased body size  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased CD4-positive, alpha beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased cell proliferation  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased fibroblast proliferation  (IAGP)
decreased megakaryocyte cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased thymocyte number  (IAGP)
dilated hair follicle infundibulum  (IAGP)
dilated heart ventricle  (IAGP)
distended abdomen  (IAGP)
distorted hair follicle pattern  (IAGP)
early cellular replicative senescence  (IAGP)
ectopic melanocytes  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
enlarged chest  (IAGP)
enlarged spleen  (IAGP)
enlarged thymus  (IAGP)
epidermal hyperplasia  (IAGP)
epithelioid cysts  (IAGP)
hyperkeratosis  (IAGP)
increased apoptosis  (IAGP)
increased B cell apoptosis  (IAGP)
increased cardiomyocyte apoptosis  (IAGP)
increased double-negative T cell number  (IAGP)
increased double-positive T cell number  (IAGP)
increased fibroblast apoptosis  (IAGP)
increased foot pad pigmentation  (IAGP)
increased pulmonary respiratory rate  (IAGP)
increased single-positive T cell number  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased T cell proliferation  (IAGP)
increased tail pigmentation  (IAGP)
increased thymocyte apoptosis  (IAGP)
increased thymocyte number  (IAGP)
increased tumor incidence  (IAGP)
internal hemorrhage  (IAGP)
irregular heartbeat  (IAGP)
lethargy  (IAGP)
Meibomian gland hyperplasia  (IAGP)
narrow eye opening  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
short hair  (IAGP)
short vibrissae  (IAGP)
thick epidermis  (IAGP)
thin epidermis stratum granulosum  (IAGP)
thrombocytopenia  (IAGP)
thymus hypoplasia  (IAGP)
trisomy  (IAGP)

References - curated
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16. MGD data from the GO Consortium
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22. Pipeline to import KEGG annotations from KEGG into RGD
23. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
24. RGD automated import pipeline
25. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. RGD automated import pipeline for gene-chemical interactions
27. Stypula-Cyrus Y, etal., PLoS One. 2013 May 28;8(5):e64600. doi: 10.1371/journal.pone.0064600. Print 2013.
28. Waltregny D, etal., Eur J Histochem. 2004 Jul-Sep;48(3):273-90.
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34. Zhao M, etal., Br J Dermatol. 2012 Feb;166(2):226-73. doi: 10.1111/j.1365-2133.2011.10646.x. Epub 2012 Jan 9.
Additional References at PubMed
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PMID:10688671   PMID:10922068   PMID:10984530   PMID:11022042   PMID:11042159   PMID:11076861   PMID:11115394   PMID:11285237   PMID:11302704   PMID:11327722   PMID:11358320   PMID:11477107  
PMID:11564889   PMID:11641275   PMID:11684023   PMID:11788710   PMID:11836251   PMID:11909966   PMID:11923873   PMID:11931769   PMID:12040188   PMID:12198164   PMID:12198165   PMID:12398767  
PMID:12477932   PMID:12520002   PMID:12574125   PMID:12616525   PMID:12711221   PMID:12799438   PMID:12900441   PMID:12972616   PMID:14519686   PMID:14593184   PMID:14610273   PMID:14643676  
PMID:14645126   PMID:14673164   PMID:14749395   PMID:15060137   PMID:15060165   PMID:15060175   PMID:15140878   PMID:15226430   PMID:15337766   PMID:15367668   PMID:15496408   PMID:15509593  
PMID:15528197   PMID:15537544   PMID:15601857   PMID:15608638   PMID:15711539   PMID:15713663   PMID:15722557   PMID:15782199   PMID:15796905   PMID:15831478   PMID:15890782   PMID:15907476  
PMID:15917248   PMID:15919722   PMID:15919778   PMID:15920471   PMID:15935060   PMID:15978719   PMID:16085498   PMID:16103876   PMID:16107708   PMID:16109736   PMID:16109738   PMID:16141072  
PMID:16141073   PMID:16288735   PMID:16377629   PMID:16407282   PMID:16407974   PMID:16416968   PMID:16431920   PMID:16462733   PMID:16484221   PMID:16582105   PMID:16602821   PMID:16611996  
PMID:16678101   PMID:16728531   PMID:16805913   PMID:16873063   PMID:16940178   PMID:17056544   PMID:17071620   PMID:17150957   PMID:17182846   PMID:17220375   PMID:17226765   PMID:17255939  
PMID:17274640   PMID:17304221   PMID:17322895   PMID:17392792   PMID:17442941   PMID:17487425   PMID:17568773   PMID:17626016   PMID:17634443   PMID:17639084   PMID:17682057   PMID:17707228  
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PMID:18622014   PMID:18622015   PMID:18651664   PMID:18824292   PMID:18851995   PMID:18983969   PMID:19015268   PMID:19099580   PMID:19124609   PMID:19144721   PMID:19181930   PMID:19235719  
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PMID:20188178   PMID:20194438   PMID:20211142   PMID:20362541   PMID:20362542   PMID:20404188   PMID:20496471   PMID:20571512   PMID:20579762   PMID:20596014   PMID:20599664   PMID:20702731  
PMID:20720167   PMID:20937823   PMID:20967026   PMID:20979029   PMID:21041482   PMID:21059642   PMID:21093383   PMID:21103394   PMID:21108932   PMID:21127047   PMID:21169561   PMID:21177534  
PMID:21267068   PMID:21270520   PMID:21270677   PMID:21292776   PMID:21311748   PMID:21321941   PMID:21364650   PMID:21367693   PMID:21423190   PMID:21423191   PMID:21448134   PMID:21454521  
PMID:21490601   PMID:21521687   PMID:21589869   PMID:21677750   PMID:21680841   PMID:21731673   PMID:21873635   PMID:21874024   PMID:21931736   PMID:21937600   PMID:21953612   PMID:21960634  
PMID:21972143   PMID:22075476   PMID:22083510   PMID:22119903   PMID:22156375   PMID:22223663   PMID:22242125   PMID:22266280   PMID:22297846   PMID:22307625   PMID:22325351   PMID:22333916  
PMID:22334647   PMID:22439931   PMID:22441348   PMID:22496552   PMID:22610404   PMID:22770845   PMID:22915496   PMID:22922362   PMID:22984607   PMID:22989952   PMID:23014989   PMID:23086144  
PMID:23087373   PMID:23213415   PMID:23287868   PMID:23327920   PMID:23436026   PMID:23440245   PMID:23449471   PMID:23456364   PMID:23475113   PMID:23498780   PMID:23506836   PMID:23516383  
PMID:23548937   PMID:23564453   PMID:23575838   PMID:23616648   PMID:23624624   PMID:23664640   PMID:23698124   PMID:23744762   PMID:23792463   PMID:23835259   PMID:23852118   PMID:23888963  
PMID:23892436   PMID:23937658   PMID:24025402   PMID:24027299   PMID:24040068   PMID:24190971   PMID:24200994   PMID:24240174   PMID:24335282   PMID:24335310   PMID:24413057   PMID:24449838  
PMID:24457600   PMID:24483844   PMID:24525021   PMID:24550390   PMID:24681565   PMID:24736997   PMID:24760871   PMID:24770533   PMID:24796935   PMID:24808536   PMID:24821725   PMID:24947680  
PMID:24958871   PMID:24982181   PMID:25011550   PMID:25043739   PMID:25178657   PMID:25187418   PMID:25203139   PMID:25333902   PMID:25412078   PMID:25648995   PMID:25758227   PMID:25868580  
PMID:25904100   PMID:25971728   PMID:26129908   PMID:26152200   PMID:26167872   PMID:26174178   PMID:26196676   PMID:26206133   PMID:26238735   PMID:26283270   PMID:26291311   PMID:26329601  
PMID:26365490   PMID:26406915   PMID:26416882   PMID:26447190   PMID:26586441   PMID:26663087   PMID:26733201   PMID:26776516   PMID:26814051   PMID:26816381   PMID:26832969   PMID:26951610  
PMID:26974661   PMID:27048565   PMID:27068467   PMID:27122033   PMID:27171263   PMID:27185875   PMID:27260837   PMID:27333946   PMID:27534825   PMID:27635759   PMID:27668390   PMID:27721407  
PMID:27806305   PMID:27857213   PMID:27871855   PMID:27886239   PMID:27913583   PMID:27941310   PMID:28028172   PMID:28139683   PMID:28185240   PMID:28186506   PMID:28276480   PMID:28300292  
PMID:28337219   PMID:28378742   PMID:28485501   PMID:28533418   PMID:28554894   PMID:28566502   PMID:28663197   PMID:28791750   PMID:28892081   PMID:28964722   PMID:29035278   PMID:29084956  
PMID:29113455   PMID:29184203   PMID:29207042   PMID:29328071   PMID:29448109   PMID:29490983   PMID:29548672   PMID:29641990   PMID:29660306   PMID:29712641   PMID:29950483   PMID:30086304  
PMID:30115891   PMID:30179675   PMID:30186101   PMID:30196744   PMID:30457570   PMID:30550785   PMID:30592280   PMID:30595499   PMID:30709655   PMID:30776024   PMID:30814129   PMID:30911105  
PMID:30916347   PMID:30926862   PMID:31077711   PMID:31271872   PMID:31278362   PMID:31304633   PMID:31356635   PMID:31361780   PMID:31450981   PMID:31600191   PMID:32098917   PMID:32102981  
PMID:32113161   PMID:32424276   PMID:32482889   PMID:32647127  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm394129,409,897 - 129,436,439 (-)NCBIGRCm39mm39
GRCm39 Ensembl4129,409,897 - 129,436,506 (-)Ensembl
GRCm384129,516,104 - 129,542,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,516,104 - 129,542,713 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,193,348 - 129,219,890 (-)NCBIGRCm37mm9NCBIm37
MGSCv364129,018,408 - 129,044,950 (-)NCBImm8
Celera1782,795,228 - 82,797,813 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl132,292,083 - 32,333,635 (+)EnsemblGRCh38hg38GRCh38
GRCh38132,292,083 - 32,333,628 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37132,757,684 - 32,799,227 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,530,295 - 32,571,811 (+)NCBINCBI36hg18NCBI36
Build 34132,426,800 - 32,468,317NCBI
Celera131,028,175 - 31,069,691 (+)NCBI
Cytogenetic Map1p35.2-p35.1NCBI
HuRef130,873,184 - 30,914,532 (+)NCBIHuRef
CHM1_1132,873,153 - 32,914,668 (+)NCBICHM1_1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.25141,853,992 - 141,881,057 (-)NCBI
Rnor_6.0 Ensembl5147,716,664 - 147,743,723 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05147,716,664 - 147,743,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05151,445,686 - 151,472,652 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,672,515 - 148,699,810 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15148,682,553 - 148,709,849 (-)NCBI
Celera5140,329,254 - 140,356,320 (-)NCBICelera
Cytogenetic Map5q36NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_00495545210,636,366 - 10,670,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,636,366 - 10,668,873 (+)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.1132,585,791 - 32,626,408 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl132,585,791 - 32,626,410 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0131,578,373 - 31,619,970 (+)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1268,901,339 - 68,936,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,901,651 - 68,936,186 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,482,127 - 65,517,259 (-)NCBI
ROS_Cfam_1.0269,467,855 - 69,503,012 (-)NCBI
UMICH_Zoey_3.1266,304,797 - 66,339,911 (-)NCBI
UNSW_CanFamBas_1.0267,300,918 - 67,335,502 (-)NCBI
UU_Cfam_GSD_1.0268,299,008 - 68,334,559 (-)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_02440505849,495,732 - 49,526,636 (+)NCBI
SpeTri2.0NW_00493647415,320,635 - 15,351,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl688,749,634 - 88,785,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,749,611 - 88,785,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,882,080 - 82,907,607 (-)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.120100,529,782 - 100,575,953 (-)NCBI
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_00462476415,510,655 - 15,552,020 (+)NCBI

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D2.2UniSTS
cM Map459.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384129,515,743 - 129,515,936UniSTSGRCm38
MGSCv374129,192,987 - 129,193,180UniSTSGRCm37
Cytogenetic Map4D2.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384129,515,602 - 129,515,711UniSTSGRCm38
GRCm38X101,708,517 - 101,708,626UniSTSGRCm38
MGSCv37X98,903,856 - 98,903,965UniSTSGRCm37
MGSCv374129,192,846 - 129,192,955UniSTSGRCm37
Celera4127,857,443 - 127,857,552UniSTS
CeleraX88,626,619 - 88,626,728UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map4D2.2UniSTS
cM MapX34.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384129,525,044 - 129,525,247UniSTSGRCm38
MGSCv374129,202,288 - 129,202,491UniSTSGRCm37
Celera4127,866,588 - 127,866,791UniSTS
Cytogenetic Map4D2.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381778,492,809 - 78,493,031UniSTSGRCm38
GRCm384129,516,608 - 129,517,500UniSTSGRCm38
MGSCv374129,193,852 - 129,194,744UniSTSGRCm37
MGSCv371778,892,149 - 78,892,371UniSTSGRCm37
Celera1782,797,079 - 82,797,301UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map4D2.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D2.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D2.2UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4124100000144600000Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124161300141845481Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124161300142711450Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124371164142504390Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124371164150592401Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID

Predicted Target Of
Summary Value
Count of predictions:1173
Count of miRNA genes:559
Interacting mature miRNAs:687
Transcripts:ENSMUST00000102597, ENSMUST00000125718, ENSMUST00000132909, ENSMUST00000139305, ENSMUST00000142984, ENSMUST00000145628, ENSMUST00000150105
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.



Reference Sequences
RefSeq Acc Id: ENSMUST00000102597   ⟹   ENSMUSP00000099657
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,516,104 - 129,542,713 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125718
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,522,491 - 129,528,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132909
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,522,826 - 129,524,542 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139305
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,528,515 - 129,542,691 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142984
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,518,083 - 129,522,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145628
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,516,268 - 129,517,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150105
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4129,522,638 - 129,524,584 (-)Ensembl
RefSeq Acc Id: NM_008228   ⟹   NP_032254
Mouse AssemblyChrPosition (strand)Source
GRCm394129,409,897 - 129,436,439 (-)NCBI
GRCm384129,516,104 - 129,542,646 (-)ENTREZGENE
MGSCv374129,193,348 - 129,219,890 (-)RGD
Celera4127,857,945 - 127,869,238 (-)ENTREZGENE
Reference Sequences
RefSeq Acc Id: NP_032254   ⟸   NM_008228
- UniProtKB: O09106 (UniProtKB/Swiss-Prot),   Q58E49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000099657   ⟸   ENSMUST00000102597
Protein Domains

RGD ID:6835459
Promoter ID:MM_KWN:39793
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B6
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,194,281 - 129,195,337 (-)MPROMDB
RGD ID:6835455
Promoter ID:MM_KWN:39794
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,199,876 - 129,201,027 (-)MPROMDB
RGD ID:6835456
Promoter ID:MM_KWN:39795
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000022293,   OTTMUST00000022295
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,201,436 - 129,202,777 (-)MPROMDB
RGD ID:6835454
Promoter ID:MM_KWN:39796
SO ACC ID:SO:0000170
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,206,759 - 129,207,259 (-)MPROMDB
RGD ID:6835453
Promoter ID:MM_KWN:39797
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000022290,   OTTMUST00000022291
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,219,809 - 129,220,309 (-)MPROMDB
RGD ID:6884768
Promoter ID:EPDNEW_M5835
Type:initiation region
Description:Mus musculus histone deacetylase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm384129,542,660 - 129,542,720EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108086 AgrOrtholog
Ensembl Genes ENSMUSG00000028800 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000099657 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000102597 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.800.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro His_deacetylse UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:433759 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hist_deacetyl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hdac1 PhenoGen
PIRSF His_deacetylse_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Secondary P97476 UniProtKB/Swiss-Prot