Gm13005 (predicted gene 13005) - Rat Genome Database

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Gene: Gm13005 (predicted gene 13005) Mus musculus
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Symbol: Gm13005
Name: predicted gene 13005
RGD ID: 5147305
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Cbx5  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,946,303 - 136,947,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,947,071 - 136,947,710 (-)EnsemblGRCm39 Ensembl
GRCm384137,218,992 - 137,220,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4137,219,760 - 137,220,399 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,774,911 - 136,776,353 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera4135,434,656 - 135,436,093 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map469.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:14610273  



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Variants in Gm13005
117 total Variants

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:177
Interacting mature miRNAs:183
Transcripts:ENSMUST00000119518
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 69 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse

1 to 10 of 69 rows





RefSeq Transcripts NG_007032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL808114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000119518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,947,071 - 136,947,710 (-)Ensembl
GRCm38.p6 Ensembl4137,219,760 - 137,220,399 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000080806 Ensembl
MGD MGI:3650102 ENTREZGENE
NCBI Gene 100047000 ENTREZGENE
PhenoGen Gm13005 PhenoGen