Fam167b (family with sequence similarity 167, member B) - Rat Genome Database

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Gene: Fam167b (family with sequence similarity 167, member B) Mus musculus
Analyze
Symbol: Fam167b
Name: family with sequence similarity 167, member B
RGD ID: 1618972
MGI Page MGI
Description: Orthologous to human FAM167B (family with sequence similarity 167 member B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC230766; MGC29254; SEC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,470,608 - 129,472,373 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,470,608 - 129,472,342 (-)EnsemblGRCm39 Ensembl
GRCm384129,576,815 - 129,578,580 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,576,815 - 129,578,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,254,059 - 129,255,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,079,172 - 129,080,851 (-)NCBIMGSCv36mm8
Celera4127,910,345 - 127,912,110 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2349114   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21677750  


Genomics

Comparative Map Data
Fam167b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,470,608 - 129,472,373 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,470,608 - 129,472,342 (-)EnsemblGRCm39 Ensembl
GRCm384129,576,815 - 129,578,580 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,576,815 - 129,578,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,254,059 - 129,255,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,079,172 - 129,080,851 (-)NCBIMGSCv36mm8
Celera4127,910,345 - 127,912,110 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
FAM167B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,247,222 - 32,248,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,247,222 - 32,248,856 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,712,823 - 32,714,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,485,405 - 32,487,048 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,982,988 - 30,984,631 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,829,058 - 30,830,701 (+)NCBIHuRef
CHM1_1132,828,413 - 32,830,056 (+)NCBICHM1_1
T2T-CHM13v2.0132,105,126 - 32,106,760 (+)NCBIT2T-CHM13v2.0
Fam167b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,205,018 - 147,206,660 (-)NCBIGRCr8
mRatBN7.25141,920,695 - 141,922,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,920,695 - 141,922,340 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5144,621,633 - 144,623,233 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,391,459 - 146,393,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,388,470 - 146,390,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05147,782,692 - 147,784,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,782,694 - 147,784,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,511,960 - 151,513,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5140,395,386 - 140,397,039 (-)NCBICelera
Cytogenetic Map5q36NCBI
Fam167b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,604,308 - 10,607,118 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,604,304 - 10,606,328 (+)NCBIChiLan1.0ChiLan1.0
FAM167B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21194,578,594 - 194,592,570 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11193,699,095 - 193,713,993 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl132,541,067 - 32,543,226 (+)Ensemblpanpan1.1panPan2
FAM167B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,966,515 - 68,968,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,966,745 - 68,968,021 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,547,315 - 65,548,966 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,533,367 - 69,535,018 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,533,596 - 69,534,873 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,369,939 - 66,371,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,365,679 - 67,367,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,364,911 - 68,366,562 (-)NCBIUU_Cfam_GSD_1.0
Fam167b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,463,554 - 49,466,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,288,954 - 15,290,881 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,289,127 - 15,290,865 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM167B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,715,794 - 88,717,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,715,710 - 88,717,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,690,611 - 82,692,179 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM167B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,620,247 - 100,622,441 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20100,620,027 - 100,622,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603316,066,398 - 16,068,363 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam167b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476415,461,947 - 15,471,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476415,463,521 - 15,470,683 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam167b
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:218
Interacting mature miRNAs:240
Transcripts:ENSMUST00000052835, ENSMUST00000142699
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000052835   ⟹   ENSMUSP00000050531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4129,470,608 - 129,472,342 (-)Ensembl
GRCm38.p6 Ensembl4129,576,815 - 129,578,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4129,470,608 - 129,471,250 (-)Ensembl
GRCm38.p6 Ensembl4129,576,815 - 129,577,457 (-)Ensembl
RefSeq Acc Id: NM_182783   ⟹   NP_877584
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394129,470,608 - 129,472,373 (-)NCBI
GRCm384129,576,815 - 129,578,580 (-)ENTREZGENE
MGSCv374129,254,059 - 129,255,824 (-)RGD
Celera4127,910,345 - 127,912,110 (-)RGD
cM Map4 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_877584 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH30183 (Get FASTA)   NCBI Sequence Viewer  
  BAE22213 (Get FASTA)   NCBI Sequence Viewer  
  BAE25611 (Get FASTA)   NCBI Sequence Viewer  
  EDL30184 (Get FASTA)   NCBI Sequence Viewer  
  EDL30185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000050531
  ENSMUSP00000050531.9
GenBank Protein P17257 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_877584   ⟸   NM_182783
- UniProtKB: Q3UNY6 (UniProtKB/Swiss-Prot),   P17257 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000050531   ⟸   ENSMUST00000052835

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17257-F1-model_v2 AlphaFold P17257 1-162 view protein structure

Promoters
RGD ID:6835299
Promoter ID:MM_KWN:39801
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000021745
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,254,171 - 129,254,671 (-)MPROMDB
RGD ID:6835297
Promoter ID:MM_KWN:39802
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:NM_182783
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364129,255,541 - 129,256,041 (-)MPROMDB
RGD ID:6884776
Promoter ID:EPDNEW_M5839
Type:multiple initiation site
Name:Fam167b_1
Description:Mus musculus family with sequence similarity 167, member B ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384129,578,543 - 129,578,603EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2668032 AgrOrtholog
Ensembl Genes ENSMUSG00000050493 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000052835 ENTREZGENE
  ENSMUST00000052835.9 UniProtKB/Swiss-Prot
InterPro FAM167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230766 UniProtKB/Swiss-Prot
MGD MGI:2668032 ENTREZGENE
NCBI Gene 230766 ENTREZGENE
PANTHER PROTEIN FAM167A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN FAM167B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam167b PhenoGen
UniProt F167B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UNY6 ENTREZGENE
  Q8K0V7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UNY6 UniProtKB/Swiss-Prot