FAM167B (family with sequence similarity 167 member B) - Rat Genome Database

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Gene: FAM167B (family with sequence similarity 167 member B) Sus scrofa
Analyze
Symbol: FAM167B
Name: family with sequence similarity 167 member B
RGD ID: 13960525
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM167B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,715,794 - 88,717,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,715,710 - 88,717,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,690,611 - 82,692,179 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
FAM167B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,715,794 - 88,717,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,715,710 - 88,717,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,690,611 - 82,692,179 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM167B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,247,222 - 32,248,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,247,222 - 32,248,856 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,712,823 - 32,714,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,485,405 - 32,487,048 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,982,988 - 30,984,631 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,829,058 - 30,830,701 (+)NCBIHuRef
CHM1_1132,828,413 - 32,830,056 (+)NCBICHM1_1
T2T-CHM13v2.0132,105,126 - 32,106,760 (+)NCBIT2T-CHM13v2.0
Fam167b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,470,608 - 129,472,373 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,470,608 - 129,472,342 (-)EnsemblGRCm39 Ensembl
GRCm384129,576,815 - 129,578,580 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,576,815 - 129,578,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,254,059 - 129,255,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,079,172 - 129,080,851 (-)NCBIMGSCv36mm8
Celera4127,910,345 - 127,912,110 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
Fam167b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,205,018 - 147,206,660 (-)NCBIGRCr8
mRatBN7.25141,920,695 - 141,922,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,920,695 - 141,922,340 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5144,621,633 - 144,623,233 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,391,459 - 146,393,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,388,470 - 146,390,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05147,782,692 - 147,784,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,782,694 - 147,784,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,511,960 - 151,513,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5140,395,386 - 140,397,039 (-)NCBICelera
Cytogenetic Map5q36NCBI
Fam167b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,604,308 - 10,607,118 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,604,304 - 10,606,328 (+)NCBIChiLan1.0ChiLan1.0
FAM167B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21194,578,594 - 194,592,570 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11193,699,095 - 193,713,993 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl132,541,067 - 32,543,226 (+)Ensemblpanpan1.1panPan2
FAM167B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,966,515 - 68,968,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,966,745 - 68,968,021 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,547,315 - 65,548,966 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,533,367 - 69,535,018 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,533,596 - 69,534,873 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,369,939 - 66,371,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,365,679 - 67,367,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,364,911 - 68,366,562 (-)NCBIUU_Cfam_GSD_1.0
Fam167b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,463,554 - 49,466,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,288,954 - 15,290,881 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,289,127 - 15,290,865 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM167B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,620,247 - 100,622,441 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20100,620,027 - 100,622,182 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603316,066,398 - 16,068,363 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam167b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476415,461,947 - 15,471,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476415,463,521 - 15,470,683 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM167B
24 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 3 2 3 2 3 1
Below cutoff 5

Sequence


RefSeq Acc Id: ENSSSCT00000004011   ⟹   ENSSSCP00000003920
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl688,715,794 - 88,717,269 (+)Ensembl
RefSeq Acc Id: XM_003127762   ⟹   XP_003127810
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1688,715,714 - 88,717,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005665176   ⟹   XP_005665233
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1688,715,710 - 88,717,272 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005665233   ⟸   XM_005665176
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003127810   ⟸   XM_003127762
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AZL0 (UniProtKB/TrEMBL),   F1SV86 (UniProtKB/TrEMBL),   A0A4X1VZD3 (UniProtKB/TrEMBL),   A0A8D0T6R8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000003920   ⟸   ENSSSCT00000004011


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003616 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005035012 UniProtKB/TrEMBL
  ENSSSCG00015069239 UniProtKB/TrEMBL
  ENSSSCG00025018115 UniProtKB/TrEMBL
  ENSSSCG00025062006 UniProtKB/TrEMBL
  ENSSSCG00030026410 UniProtKB/TrEMBL
  ENSSSCG00035070788 UniProtKB/TrEMBL
  ENSSSCG00040055336 UniProtKB/TrEMBL
  ENSSSCG00045039587 UniProtKB/TrEMBL
  ENSSSCG00050044782 UniProtKB/TrEMBL
  ENSSSCG00055025456 UniProtKB/TrEMBL
  ENSSSCG00060058848 UniProtKB/TrEMBL
  ENSSSCG00065045907 UniProtKB/TrEMBL
  ENSSSCG00070027607 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004011 ENTREZGENE
  ENSSSCT00000004011.3 UniProtKB/TrEMBL
  ENSSSCT00005055863.1 UniProtKB/TrEMBL
  ENSSSCT00015092710.1 UniProtKB/TrEMBL
  ENSSSCT00025024543.1 UniProtKB/TrEMBL
  ENSSSCT00025084865.1 UniProtKB/TrEMBL
  ENSSSCT00030036890.1 UniProtKB/TrEMBL
  ENSSSCT00035095663.1 UniProtKB/TrEMBL
  ENSSSCT00040074953.1 UniProtKB/TrEMBL
  ENSSSCT00045069029.1 UniProtKB/TrEMBL
  ENSSSCT00050060953.1 UniProtKB/TrEMBL
  ENSSSCT00055050293.1 UniProtKB/TrEMBL
  ENSSSCT00060080249.1 UniProtKB/TrEMBL
  ENSSSCT00065062791.1 UniProtKB/TrEMBL
  ENSSSCT00070055355.1 UniProtKB/TrEMBL
InterPro FAM167 UniProtKB/TrEMBL
KEGG Report ssc:100519719 UniProtKB/TrEMBL
NCBI Gene FAM167B ENTREZGENE
PANTHER PROTEIN FAM167A UniProtKB/TrEMBL
  PROTEIN FAM167B UniProtKB/TrEMBL
Pfam FAM167 UniProtKB/TrEMBL
UniProt A0A4X1VZD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T6R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AZL0 ENTREZGENE, UniProtKB/TrEMBL
  F1SV86 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87925 ENTREZGENE