Fam167b (family with sequence similarity 167 member B)

Gene: Fam167b (family with sequence similarity 167 member B) Heterocephalus glaber

Analyze

Symbol:

Fam167b

Name:

family with sequence similarity 167 member B

RGD ID:

18906117

Description:

ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein FAM167B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,461,947 - 15,471,372 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,463,521 - 15,470,683 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

References

Additional References at PubMed

PMID:21993625

Genomics

Comparative Map Data

Fam167b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,461,947 - 15,471,372 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,463,521 - 15,470,683 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

FAM167B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,247,222 - 32,248,856 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,247,222 - 32,248,856 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	32,712,823 - 32,714,457 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	32,485,405 - 32,487,048 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	30,982,988 - 30,984,631 (+)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	30,829,058 - 30,830,701 (+)	NCBI		HuRef
CHM1_1	1	32,828,413 - 32,830,056 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,105,126 - 32,106,760 (+)	NCBI		T2T-CHM13v2.0

Fam167b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,470,608 - 129,472,373 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,470,608 - 129,472,342 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,576,815 - 129,578,580 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,576,815 - 129,578,549 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,254,059 - 129,255,824 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	129,079,172 - 129,080,851 (-)	NCBI		MGSCv36	mm8
Celera	4	127,910,345 - 127,912,110 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.26	NCBI

Fam167b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,205,018 - 147,206,660 (-)	NCBI		GRCr8
mRatBN7.2	5	141,920,695 - 141,922,342 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,920,695 - 141,922,340 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,621,633 - 144,623,233 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	146,391,459 - 146,393,059 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	146,388,470 - 146,390,079 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,782,692 - 147,784,345 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,782,694 - 147,784,311 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,511,960 - 151,513,632 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	140,395,386 - 140,397,039 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Fam167b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	10,604,308 - 10,607,118 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	10,604,304 - 10,606,328 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM167B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	194,578,594 - 194,592,570 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,699,095 - 193,713,993 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	1	32,541,067 - 32,543,226 (+)	Ensembl	panpan1.1		panPan2

FAM167B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,966,515 - 68,968,176 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,966,745 - 68,968,021 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,547,315 - 65,548,966 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,533,367 - 69,535,018 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,533,596 - 69,534,873 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	66,369,939 - 66,371,590 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	67,365,679 - 67,367,330 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	68,364,911 - 68,366,562 (-)	NCBI		UU_Cfam_GSD_1.0

Fam167b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,463,554 - 49,466,099 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,288,954 - 15,290,881 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,289,127 - 15,290,865 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM167B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	88,715,794 - 88,717,269 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	88,715,710 - 88,717,272 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	82,690,611 - 82,692,179 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM167B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	100,620,247 - 100,622,441 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	100,620,027 - 100,622,182 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	16,066,398 - 16,068,363 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004850850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01044928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH171903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSHGLT00000018393 ⟹ ENSHGLP00000018212

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624764	15,461,947 - 15,471,372 (+)	Ensembl

RefSeq Acc Id:

XM_004850850 ⟹ XP_004850907

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624764	15,463,521 - 15,470,683 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004850907	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHB12851	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000018212
	ENSHGLP00000049271

RefSeq Acc Id:	XP_004850907 ⟸ XM_004850850
- UniProtKB:	G5BU90 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSHGLP00000018212 ⟸ ENSHGLT00000018393

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000013024	Ensembl, ENTREZGENE
	ENSHGLG00000044305	UniProtKB/TrEMBL
Ensembl Transcript	ENSHGLT00000018393	ENTREZGENE
	ENSHGLT00000053587	UniProtKB/TrEMBL
InterPro	FAM167	UniProtKB/TrEMBL
KEGG Report	hgl:101714745	UniProtKB/TrEMBL
NCBI Gene	Fam167b	ENTREZGENE
PANTHER	PROTEIN FAM167A	UniProtKB/TrEMBL
	PROTEIN FAM167B	UniProtKB/TrEMBL
Pfam	FAM167	UniProtKB/TrEMBL
UniProt	G5BU90	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD