Nbl1 (NBL1, DAN family BMP antagonist) - Rat Genome Database

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Gene: Nbl1 (NBL1, DAN family BMP antagonist) Mus musculus
Analyze
Symbol: Nbl1
Name: NBL1, DAN family BMP antagonist
RGD ID: 736913
MGI Page MGI
Description: Enables BMP binding activity and morphogen activity. Involved in several processes, including determination of dorsal identity; negative regulation of monocyte chemotaxis; and sequestering of BMP in extracellular matrix. Acts upstream of or within negative regulation of BMP signaling pathway; neuron projection morphogenesis; and positive regulation of neuron differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including alimentary system; brain ventricular layer; embryo mesenchyme; limb; and nose. Orthologous to several human genes including MICOS10-NBL1 (MICOS10-NBL1 readthrough); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D; D4H1S1733; D4H1S1733E; DAN; Dana; MGC123430; N; N03; neuroblastoma suppressor of tumorigenicity 1; neuroblastoma, suppression of tumorigenicity 1; NO3; zinc finger protein DAN
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,809,602 - 138,820,437 (-)NCBIGRCm39mm39
GRCm39 Ensembl4138,809,595 - 138,820,304 (-)Ensembl
GRCm384139,082,291 - 139,093,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,082,284 - 139,092,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv374138,638,207 - 138,648,885 (-)NCBIGRCm37mm9NCBIm37
MGSCv364138,354,368 - 138,364,941 (-)NCBImm8
Celera4140,868,231 - 140,871,576 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8609050   PMID:8703135   PMID:9660951   PMID:9831647   PMID:10208746   PMID:10349636   PMID:10524628   PMID:11042159   PMID:11076861   PMID:11134349   PMID:11217851   PMID:11290528  
PMID:11748835   PMID:12011466   PMID:12477932   PMID:14519502   PMID:15033178   PMID:15528323   PMID:16141072   PMID:16141073   PMID:16325379   PMID:16679559   PMID:17164417   PMID:17359964  
PMID:17914181   PMID:20589901   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22114682   PMID:22365545   PMID:22560297   PMID:23213481   PMID:23676271   PMID:27986952   PMID:31624071  


Genomics

Comparative Map Data
Nbl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,809,602 - 138,820,437 (-)NCBIGRCm39mm39
GRCm39 Ensembl4138,809,595 - 138,820,304 (-)Ensembl
GRCm384139,082,291 - 139,093,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,082,284 - 139,092,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv374138,638,207 - 138,648,885 (-)NCBIGRCm37mm9NCBIm37
MGSCv364138,354,368 - 138,364,941 (-)NCBImm8
Celera4140,868,231 - 140,871,576 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.57NCBI
NBL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl119,596,979 - 19,658,456 (+)EnsemblGRCh38hg38GRCh38
GRCh38119,643,229 - 19,658,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37119,969,723 - 19,984,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,842,313 - 19,857,532 (+)NCBINCBI36hg18NCBI36
Build 34119,715,031 - 19,730,251NCBI
Celera118,296,492 - 18,311,717 (+)NCBI
Cytogenetic Map1p36.13NCBI
HuRef118,215,821 - 18,231,031 (+)NCBIHuRef
CHM1_1120,078,997 - 20,094,228 (+)NCBICHM1_1
Nbl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25151,318,752 - 151,329,948 (-)NCBI
Rnor_6.0 Ensembl5157,524,513 - 157,535,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05157,524,569 - 157,535,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05161,263,765 - 161,274,897 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5149,703,598 - 149,714,771 (-)NCBICelera
Cytogenetic Map5q36NCBI
Nbl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955452308,573 - 319,989 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955452316,867 - 319,883 (+)NCBIChiLan1.0ChiLan1.0
NBL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1119,652,853 - 19,656,431 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,641,279 - 19,656,431 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0118,599,121 - 18,613,305 (+)NCBIMhudiblu_PPA_v0panPan3
NBL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,040,206 - 79,102,792 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,041,105 - 79,102,820 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,554,895 - 75,582,497 (-)NCBI
ROS_Cfam_1.0279,607,161 - 79,634,902 (-)NCBI
UMICH_Zoey_3.1276,425,235 - 76,452,808 (-)NCBI
UNSW_CanFamBas_1.0277,434,195 - 77,461,836 (-)NCBI
UU_Cfam_GSD_1.0278,503,885 - 78,531,526 (-)NCBI
Nbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,996,034 - 40,018,509 (+)NCBI
SpeTri2.0NW_0049364745,820,798 - 5,843,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NBL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,059,094 - 78,071,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,046,084 - 78,071,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,138,765 - 72,142,022 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NBL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120112,893,928 - 112,908,041 (-)NCBI
ChlSab1.1 Ensembl20112,893,633 - 112,897,355 (-)Ensembl
Vero_WHO_p1.0NW_0236660333,253,483 - 3,267,595 (+)NCBI
Nbl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247644,771,334 - 4,774,462 (+)NCBI

Position Markers
UniSTS:224311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384139,083,080 - 139,083,243UniSTSGRCm38
MGSCv374138,638,995 - 138,639,158UniSTSGRCm37
Celera4140,869,019 - 140,869,182UniSTS
Cytogenetic Map4D3UniSTS
cM Map470.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4124100000144600000Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124161300141845481Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124161300142711450Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124371164142504390Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124371164150592401Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129572018151570093Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131923413141151964Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4132926037156508116Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133427367150704994Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133592276156508116Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134569994156508116Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134569994156508116Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137890537142562902Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137890537151570093Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137946694150592401Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138859268156508116Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1029
Count of miRNA genes:514
Interacting mature miRNAs:634
Transcripts:ENSMUST00000042844, ENSMUST00000132900, ENSMUST00000132940
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK133787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL805923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000042844   ⟹   ENSMUSP00000045608
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4139,082,284 - 139,092,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4139,092,076 - 139,092,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4139,083,207 - 139,092,106 (-)Ensembl
RefSeq Acc Id: NM_008675   ⟹   NP_032701
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,603 - 138,820,281 (-)NCBI
GRCm384139,082,292 - 139,092,970 (-)NCBI
MGSCv374138,638,207 - 138,648,885 (-)RGD
Celera4140,868,231 - 140,871,576 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538625   ⟹   XP_006538688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,350 (-)NCBI
GRCm384139,082,291 - 139,093,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253299   ⟹   XP_030109159
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,349 (-)NCBI
GRCm384139,082,291 - 139,093,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253300   ⟹   XP_030109160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,437 (-)NCBI
GRCm384139,082,291 - 139,093,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253301   ⟹   XP_030109161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,349 (-)NCBI
GRCm384139,082,291 - 139,092,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163807   ⟹   XP_036019700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,353 (-)NCBI
RefSeq Acc Id: XM_036163808   ⟹   XP_036019701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,820,349 (-)NCBI
RefSeq Acc Id: XM_036163809   ⟹   XP_036019702
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,809,602 - 138,818,715 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_032701   ⟸   NM_008675
- Peptide Label: precursor
- UniProtKB: Q61477 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538688   ⟸   XM_006538625
- Peptide Label: isoform X2
- UniProtKB: Q61477 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109160   ⟸   XM_030253300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109159   ⟸   XM_030253299
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109161   ⟸   XM_030253301
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000045608   ⟸   ENSMUST00000042844
RefSeq Acc Id: XP_036019700   ⟸   XM_036163807
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036019701   ⟸   XM_036163808
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019702   ⟸   XM_036163809
- Peptide Label: isoform X3
Protein Domains
CTCK

Promoters
RGD ID:6835732
Promoter ID:MM_KWN:40349
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   MEF_B4
Transcripts:OTTMUST00000022950
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364138,648,026 - 138,648,712 (-)MPROMDB
RGD ID:6835731
Promoter ID:MM_KWN:40350
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:OTTMUST00000022949,   OTTMUST00000022951
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364138,648,926 - 138,649,426 (-)MPROMDB
RGD ID:6885220
Promoter ID:EPDNEW_M6061
Type:single initiation site
Name:Nbl1_2
Description:Mus musculus neuroblastoma, suppression of tumorigenicity 1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6062  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384139,092,753 - 139,092,813EPDNEW
RGD ID:6885222
Promoter ID:EPDNEW_M6062
Type:initiation region
Name:Nbl1_1
Description:Mus musculus neuroblastoma, suppression of tumorigenicity 1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6061  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384139,092,968 - 139,093,028EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104591 AgrOrtholog
Ensembl Genes ENSMUSG00000041120 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000045608 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042844 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
InterPro Cys_knot_C UniProtKB/Swiss-Prot
  Cystine-knot_cytokine UniProtKB/Swiss-Prot
  DAN UniProtKB/Swiss-Prot
  Neuroblast_suppress_tumour_1 UniProtKB/Swiss-Prot
KEGG Report mmu:17965 UniProtKB/Swiss-Prot
MGD MGI:104591 ENTREZGENE
NCBI Gene 17965 ENTREZGENE
Pfam DAN UniProtKB/Swiss-Prot
PhenoGen Nbl1 PhenoGen
PIRSF DAN_sub UniProtKB/Swiss-Prot
SMART SM00041 UniProtKB/Swiss-Prot
UniProt NBL1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q499K5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 Nbl1  NBL1, DAN family BMP antagonist    neuroblastoma, suppression of tumorigenicity 1  Symbol and/or name change 5135510 APPROVED