Pgd (phosphogluconate dehydrogenase) - Rat Genome Database

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Gene: Pgd (phosphogluconate dehydrogenase) Mus musculus
Analyze
Symbol: Pgd
Name: phosphogluconate dehydrogenase
RGD ID: 11087
MGI Page MGI
Description: Enables phosphogluconate dehydrogenase (decarboxylating) activity. Acts upstream of or within pentose biosynthetic process. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be active in cytosol. Is expressed in several structures, including adrenal gland; alimentary system; axial musculature; liver; and orbito-sphenoid. Orthologous to human PGD (phosphogluconate dehydrogenase); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - oxidative phase; ribose 5-phosphate isomerase deficiency pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610042A05Rik; 6-phosphogluconate dehydrogenase, decarboxylating; AU019875; C78335
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,234,448 - 149,251,162 (-)NCBIGRCm39mm39
GRCm39 Ensembl4149,234,448 - 149,251,228 (-)Ensembl
GRCm384149,149,991 - 149,166,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,149,991 - 149,166,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,524,094 - 148,540,816 (-)NCBIGRCm37mm9NCBIm37
MGSCv364147,993,785 - 148,010,507 (-)NCBImm8
Celera4151,416,090 - 151,432,815 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(E)-cinnamyl alcohol  (ISO)
(R)-noradrenaline  (ISO)
(S)-naringenin  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
2-tert-butylhydroquinone  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-methylphenazinium methyl sulfate  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-hexylcinnamaldehyde  (ISO)
amikacin  (ISO)
ampicillin  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
astaxanthin  (ISO)
Bandrowski's base  (ISO)
benzo[a]pyrene  (EXP)
benzoic acid  (ISO)
benzylpenicillin  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A5  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium sulfate  (EXP)
carbon nanotube  (EXP)
carvedilol  (ISO)
cefepime  (ISO)
cefotaxime  (ISO)
chloramphenicol  (ISO)
chloroprene  (EXP)
choline  (EXP)
chrysin  (ISO)
cinnamyl alcohol  (ISO)
ciprofloxacin  (ISO)
cis-caffeic acid  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diethyl maleate  (ISO)
digoxin  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
disulfiram  (ISO)
dopamine  (ISO)
ellagic acid  (ISO)
eugenol  (ISO)
ferulic acid  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furosemide  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
hexane  (ISO)
iron trichloride  (ISO)
isepamicin  (ISO)
isoeugenol  (ISO)
isoflavones  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
menadione  (EXP)
methyl salicylate  (ISO)
methylene blue  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
N-acetyl-L-cysteine  (ISO)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
netilmycin  (ISO)
nickel sulfate  (ISO)
ofloxacin  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
phosgene  (EXP)
pirinixic acid  (EXP)
potassium chromate  (EXP)
potassium dichromate  (EXP)
propan-2-ol  (ISO)
propiconazole  (EXP)
pyrroles  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sinapic acid  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
teicoplanin  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
trans-caffeic acid  (ISO)
trans-isoeugenol  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
zearalenone  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:75870   PMID:198184   PMID:204065   PMID:209463   PMID:662012   PMID:1200981   PMID:1235912   PMID:1889815   PMID:3082971   PMID:3863747   PMID:6200103   PMID:6375655  
PMID:6445830   PMID:6581542   PMID:7063884   PMID:7323947   PMID:7719023   PMID:7943979   PMID:8001974   PMID:8104872   PMID:8491670   PMID:8889548   PMID:10349636   PMID:10613847  
PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15155459   PMID:15782199   PMID:15896329   PMID:16107646   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22677172   PMID:24803591   PMID:25775596   PMID:28245920   PMID:32325033   PMID:33691103  


Genomics

Comparative Map Data
Pgd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,234,448 - 149,251,162 (-)NCBIGRCm39mm39
GRCm39 Ensembl4149,234,448 - 149,251,228 (-)Ensembl
GRCm384149,149,991 - 149,166,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,149,991 - 149,166,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,524,094 - 148,540,816 (-)NCBIGRCm37mm9NCBIm37
MGSCv364147,993,785 - 148,010,507 (-)NCBImm8
Celera4151,416,090 - 151,432,815 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.96NCBI
PGD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl110,398,592 - 10,420,511 (+)EnsemblGRCh38hg38GRCh38
GRCh38110,399,064 - 10,420,511 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37110,459,121 - 10,480,568 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,381,672 - 10,402,788 (+)NCBINCBI36hg18NCBI36
Build 34110,393,350 - 10,414,467NCBI
Celera19,570,477 - 9,591,593 (+)NCBI
Cytogenetic Map1p36.22NCBI
HuRef19,612,776 - 9,633,839 (+)NCBIHuRef
CHM1_1110,447,954 - 10,469,073 (+)NCBICHM1_1
Pgd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25159,582,746 - 159,598,945 (-)NCBImRatBN7.2
Rnor_6.05165,966,128 - 165,982,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05169,614,705 - 169,630,921 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,221,292 - 166,237,485 (-)NCBIRGSC3.4rn4RGSC3.4
Celera5157,853,711 - 157,869,910 (-)NCBICelera
Cytogenetic Map5q36NCBI
Pgd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,343,863 - 3,357,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,344,705 - 3,356,906 (-)NCBIChiLan1.0ChiLan1.0
PGD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1110,385,022 - 10,408,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,385,087 - 10,408,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v019,159,412 - 9,180,740 (+)NCBIMhudiblu_PPA_v0panPan3
PGD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,393,526 - 85,408,714 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl285,393,819 - 85,408,272 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,995,019 - 82,010,228 (-)NCBI
ROS_Cfam_1.0286,128,551 - 86,143,976 (-)NCBI
UMICH_Zoey_3.1282,875,909 - 82,891,117 (-)NCBI
UNSW_CanFamBas_1.0283,878,401 - 83,893,609 (-)NCBI
UU_Cfam_GSD_1.0284,941,328 - 84,956,541 (-)NCBI
Pgd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,749,594 - 33,766,445 (+)NCBI
SpeTri2.0NW_0049366234,234,869 - 4,251,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,675,815 - 70,692,679 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,675,751 - 70,692,697 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,608,578 - 64,625,512 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q22-q25NCBI
PGD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,359,854 - 121,380,934 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605425,275,267 - 25,297,177 (-)NCBIVero_WHO_p1.0
Pgd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248182,261,658 - 2,274,878 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH136307  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,150,112 - 149,150,301UniSTSGRCm38
MGSCv374148,524,221 - 148,524,410UniSTSGRCm37
Celera4151,416,217 - 151,416,406UniSTS
Cytogenetic Map4E2UniSTS
cM Map477.6UniSTS
RH126350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,150,050 - 149,150,284UniSTSGRCm38
MGSCv374148,524,159 - 148,524,393UniSTSGRCm37
Celera4151,416,155 - 151,416,389UniSTS
Cytogenetic Map4E2UniSTS
cM Map477.6UniSTS
Whitehead/MRC_RH41917.78UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124371164150592401Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129572018151570093Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4132926037156508116Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133427367150704994Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133592276156508116Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134569994156508116Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134569994156508116Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137890537151570093Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137946694150592401Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138859268156508116Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:696
Count of miRNA genes:469
Interacting mature miRNAs:543
Transcripts:ENSMUST00000084124, ENSMUST00000124409, ENSMUST00000137982, ENSMUST00000143944, ENSMUST00000156120
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI834806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX212251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX215938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000084124   ⟹   ENSMUSP00000081141
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,234,448 - 149,251,164 (-)Ensembl
GRCm38.p6 Ensembl4149,149,991 - 149,166,707 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,239,649 - 149,244,456 (-)Ensembl
GRCm38.p6 Ensembl4149,155,192 - 149,159,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137982
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,244,750 - 149,246,111 (-)Ensembl
GRCm38.p6 Ensembl4149,160,293 - 149,161,654 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,245,841 - 149,251,117 (-)Ensembl
GRCm38.p6 Ensembl4149,161,384 - 149,166,660 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,244,384 - 149,251,228 (-)Ensembl
GRCm38.p6 Ensembl4149,159,927 - 149,166,771 (-)Ensembl
RefSeq Acc Id: NM_001081274   ⟹   NP_001074743
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,234,448 - 149,251,162 (-)NCBI
GRCm384149,149,991 - 149,166,705 (-)NCBI
MGSCv374148,524,094 - 148,540,816 (-)RGD
Celera4151,416,090 - 151,432,815 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001356332   ⟹   NP_001343261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,234,448 - 149,250,539 (-)NCBI
GRCm384149,149,991 - 149,166,082 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538472   ⟹   XP_006538535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,234,450 - 149,250,539 (-)NCBI
GRCm384149,149,993 - 149,166,082 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253082   ⟹   XP_030108942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,234,450 - 149,251,156 (-)NCBI
GRCm384149,149,993 - 149,166,660 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001074743   ⟸   NM_001081274
- Peptide Label: isoform 1
- UniProtKB: Q9DCD0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538535   ⟸   XM_006538472
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001343261   ⟸   NM_001356332
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030108942   ⟸   XM_030253082
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000081141   ⟸   ENSMUST00000084124
Protein Domains
6PGD

Promoters
RGD ID:6835839
Promoter ID:MM_KWN:40856
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000025648
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,532,106 - 148,534,482 (-)MPROMDB
RGD ID:6835838
Promoter ID:MM_KWN:40857
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000025647
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,535,451 - 148,536,602 (-)MPROMDB
RGD ID:6835840
Promoter ID:MM_KWN:40858
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001081274,   OTTMUST00000070455,   OTTMUST00000070456,   UC008VVW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,540,706 - 148,541,602 (-)MPROMDB
RGD ID:6885552
Promoter ID:EPDNEW_M6227
Type:initiation region
Name:Pgd_1
Description:Mus musculus phosphogluconate dehydrogenase , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384149,166,665 - 149,166,725EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97553 AgrOrtholog
Ensembl Genes ENSMUSG00000028961 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000081141 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000084124 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1040.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGDH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGDH_Gnd/GntZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGDH_NADP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6PGdom_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pgluconate_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:110208 UniProtKB/Swiss-Prot
MGD MGI:97553 ENTREZGENE
NCBI Gene 110208 ENTREZGENE
PANTHER PTHR11811 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 6PGD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD_binding_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pgd PhenoGen
PIRSF 6PGD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS 6PGDHDRGNASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE 6PGD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 6PGD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs gnd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt 6PGD_MOUSE UniProtKB/Swiss-Prot
  Q3UAG2_MOUSE UniProtKB/TrEMBL
  Q91V28_MOUSE UniProtKB/TrEMBL
  Q91YT9_MOUSE UniProtKB/TrEMBL
  Q9DCD0 ENTREZGENE
UniProt Secondary Q3UD80 UniProtKB/Swiss-Prot