Ror1 (receptor tyrosine kinase-like orphan receptor 1) - Rat Genome Database

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Gene: Ror1 (receptor tyrosine kinase-like orphan receptor 1) Mus musculus
Analyze
Symbol: Ror1
Name: receptor tyrosine kinase-like orphan receptor 1
RGD ID: 1557099
MGI Page MGI
Description: Predicted to enable Wnt receptor activity and Wnt-protein binding activity. Involved in inner ear development. Located in axon terminus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; heart; and sensory organ. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 108. Orthologous to human ROR1 (receptor tyrosine kinase like orphan receptor 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 2810404D04Rik; inactive tyrosine-protein kinase transmembrane receptor ROR1; mRor1; neurotrophic tyrosine kinase, receptor related 1; neurotrophic tyrosine kinase, receptor-related 1; Ntr; Ntrkr1; tyrosine-protein kinase transmembrane receptor ROR1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39499,952,988 - 100,302,003 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl499,952,988 - 100,301,962 (+)EnsemblGRCm39 Ensembl
GRCm384100,095,791 - 100,444,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4100,095,791 - 100,444,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv37499,768,396 - 100,115,150 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36499,593,723 - 99,940,477 (+)NCBIMGSCv36mm8
Celera498,440,698 - 98,803,975 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cylindrospermopsin  (ISO)
dexamethasone  (EXP,ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
glyphosate  (ISO)
hydrazine  (EXP)
hydrogen sulfide  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
retinyl acetate  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)
versicolorin A  (ISO)
vinclozolin  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IBA)
axon terminus  (IDA)
cell surface  (IEA,ISO)
plasma membrane  (IBA,ISO,ISS)
receptor complex  (IBA,ISO)
stress fiber  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IEA)
abnormal axon fasciculation  (IAGP)
abnormal blood homeostasis  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cartilage morphology  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal embryo attachment  (IAGP)
abnormal facial morphology  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal maternal decidual layer morphology  (IAGP)
abnormal pubic symphysis morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal ribbon synapse morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal spleen morphology  (IEA)
abnormal sympathetic neuron innervation pattern  (IAGP)
abnormal synapse morphology  (IAGP)
abnormal thymus morphology  (IEA)
abnormal uterus morphology  (IEA)
absent sternum  (IAGP)
caudal body truncation  (IAGP)
cyanosis  (IAGP)
deafness  (IAGP)
decreased cochlea coiling  (IAGP)
decreased distortion product otoacoustic emission amplitude  (IAGP)
decreased litter size  (IAGP)
enlarged spleen  (IEA)
enlarged thymus  (IEA)
exencephaly  (IAGP)
hydrometra  (IEA)
hydrops fetalis  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased prepulse inhibition  (IEA)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
reduced female fertility  (IAGP)
respiratory distress  (IAGP)
short limbs  (IAGP)
small kidney  (IEA)
transposition of great arteries  (IAGP)
ventricular septal defect  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10231392   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11114734   PMID:11429290   PMID:11455430   PMID:11713269   PMID:12477932   PMID:12754255   PMID:12898527   PMID:14681479  
PMID:15654020   PMID:16141072   PMID:16141073   PMID:16602821   PMID:19958813   PMID:20593419   PMID:21267068   PMID:21873635   PMID:21905163   PMID:22074948   PMID:22328498   PMID:22343533  
PMID:22956684   PMID:24370848   PMID:24379361   PMID:24947019   PMID:24952961   PMID:25043182   PMID:25196998   PMID:25826454   PMID:26687221   PMID:26840931   PMID:27162350   PMID:28790171  
PMID:28885975   PMID:29774072   PMID:30026494   PMID:30342492   PMID:30561639   PMID:30801848   PMID:30832318   PMID:30889382   PMID:31257105   PMID:32046118   PMID:32325033   PMID:33506575  
PMID:34032267   PMID:34155901   PMID:34321664   PMID:34321999   PMID:34584188   PMID:36811220   PMID:37343369   PMID:37430307   PMID:38355793  


Genomics

Comparative Map Data
Ror1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39499,952,988 - 100,302,003 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl499,952,988 - 100,301,962 (+)EnsemblGRCm39 Ensembl
GRCm384100,095,791 - 100,444,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4100,095,791 - 100,444,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv37499,768,396 - 100,115,150 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36499,593,723 - 99,940,477 (+)NCBIMGSCv36mm8
Celera498,440,698 - 98,803,975 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.71NCBI
ROR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,774,017 - 64,181,498 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,774,017 - 64,181,498 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,239,688 - 64,647,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,012,278 - 64,417,295 (+)NCBINCBI36Build 36hg18NCBI36
Build 34163,951,734 - 64,356,728NCBI
Celera162,529,560 - 62,934,556 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef162,347,586 - 62,756,081 (+)NCBIHuRef
CHM1_1164,355,431 - 64,762,928 (+)NCBICHM1_1
T2T-CHM13v2.0163,649,841 - 64,057,220 (+)NCBIT2T-CHM13v2.0
Ror1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85119,859,744 - 120,203,573 (+)NCBIGRCr8
mRatBN7.25114,744,311 - 115,088,155 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5114,744,304 - 115,088,155 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5117,300,787 - 117,645,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05119,026,114 - 119,370,397 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05119,088,648 - 119,432,748 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05118,892,874 - 119,239,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5119,097,715 - 119,241,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05122,797,453 - 123,142,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45120,746,419 - 121,098,205 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5113,291,894 - 113,634,989 (+)NCBICelera
Cytogenetic Map5q33NCBI
Ror1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542326,028,250 - 26,170,533 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542326,029,122 - 26,274,668 (-)NCBIChiLan1.0ChiLan1.0
ROR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21162,671,934 - 163,080,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,822,491 - 162,231,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,030,097 - 63,437,919 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,838,657 - 65,326,640 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,839,061 - 65,324,036 (+)Ensemblpanpan1.1panPan2
ROR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1546,010,097 - 46,477,882 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl546,013,195 - 46,190,880 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha546,068,820 - 46,544,259 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0546,188,060 - 46,663,533 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl546,187,788 - 46,589,860 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1546,150,427 - 46,625,603 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0546,096,358 - 46,571,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0546,354,072 - 46,829,399 (-)NCBIUU_Cfam_GSD_1.0
Ror1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505877,012,361 - 77,386,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366921,328,195 - 1,699,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366921,327,779 - 1,702,350 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ROR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6148,315,286 - 148,761,524 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16148,314,575 - 148,834,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26136,767,337 - 136,909,420 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ROR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12068,910,736 - 69,318,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2068,910,751 - 68,954,618 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603348,147,169 - 48,565,776 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ror1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474230,172,093 - 30,319,067 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474230,172,458 - 30,474,801 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1017
Count of miRNA genes:546
Interacting mature miRNAs:661
Transcripts:ENSMUST00000039630
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
14696687Gdq1_mgrooming duration QTL 1, males (mouse)496888237111857197Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse

Markers in Region
01.MMHAP71FRA7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,182,004 - 100,182,189UniSTSGRCm38
MGSCv37499,854,609 - 99,854,794UniSTSGRCm37
Celera498,526,504 - 98,526,689UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS
Whitehead_YAC4 UniSTS
D4Mit175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,399,497 - 100,399,607UniSTSGRCm38
MGSCv374100,072,102 - 100,072,212UniSTSGRCm37
Celera498,760,845 - 98,760,955UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS
Whitehead Genetic447.0UniSTS
Whitehead/MRC_RH41405.42UniSTS
Whitehead_YAC4 UniSTS
Ror1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,443,278 - 100,444,158UniSTSGRCm38
MGSCv374100,115,883 - 100,116,763UniSTSGRCm37
Celera498,804,707 - 98,805,587UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS
UniSTS:234976  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,099,232 - 100,099,434UniSTSGRCm38
MGSCv37499,771,837 - 99,772,039UniSTSGRCm37
Celera498,444,137 - 98,444,339UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS
UniSTS:234978  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,444,113 - 100,444,315UniSTSGRCm38
MGSCv374100,116,718 - 100,116,920UniSTSGRCm37
Celera498,805,542 - 98,805,744UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001312690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB010383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB652069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039630   ⟹   ENSMUSP00000048171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl499,952,988 - 100,301,962 (+)Ensembl
GRCm38.p6 Ensembl4100,095,791 - 100,444,765 (+)Ensembl
RefSeq Acc Id: NM_001312690   ⟹   NP_001299619
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39499,952,988 - 100,192,960 (+)NCBI
GRCm384100,095,791 - 100,335,763 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013845   ⟹   NP_038873
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39499,952,988 - 100,302,003 (+)NCBI
GRCm384100,095,791 - 100,444,806 (+)NCBI
MGSCv37499,768,396 - 100,115,150 (+)RGD
Celera498,440,698 - 98,803,975 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503121   ⟹   XP_006503184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394100,255,988 - 100,301,994 (+)NCBI
GRCm384100,398,791 - 100,444,797 (+)NCBI
Sequence:
RefSeq Acc Id: NP_038873   ⟸   NM_013845
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8BG10 (UniProtKB/Swiss-Prot),   Q9Z139 (UniProtKB/Swiss-Prot),   Q8BNP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503184   ⟸   XM_006503121
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001299619   ⟸   NM_001312690
- Peptide Label: isoform 2 precursor
- UniProtKB: Q501P6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000048171   ⟸   ENSMUST00000039630
Protein Domains
FZ   Ig-like   Ig-like C2-type   Kringle   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z139-F1-model_v2 AlphaFold Q9Z139 1-937 view protein structure

Promoters
RGD ID:6836082
Promoter ID:MM_KWN:38631
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000039630,   UC008TVC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36499,768,444 - 99,768,944 (+)MPROMDB
RGD ID:6883968
Promoter ID:EPDNEW_M5425
Type:initiation region
Name:Ror1_1
Description:Mus musculus receptor tyrosine kinase-like orphan receptor 1, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384100,095,844 - 100,095,904EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347520 AgrOrtholog
Ensembl Genes ENSMUSG00000035305 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039630 ENTREZGENE
  ENSMUST00000039630.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.2000.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Frizzled_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RTK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_rcpt_ROR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26563 UniProtKB/Swiss-Prot
MGD MGI:1347520 ENTREZGENE
NCBI Gene 26563 ENTREZGENE
PANTHER BASIGIN RELATED UniProtKB/TrEMBL
  INACTIVE TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ROUNDABOUT HOMOLOG 4 UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF01392 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ror1 PhenoGen
PIRSF TyrPK_TMrec_ROR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS KRINGLE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRINGLE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRINGLE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50038 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q501P6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BG10 ENTREZGENE
  Q8BNP9 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z139 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BG10 UniProtKB/Swiss-Prot