Rad54l (RAD54 like (S. cerevisiae)) - Rat Genome Database

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Gene: Rad54l (RAD54 like (S. cerevisiae)) Mus musculus
Analyze
Symbol: Rad54l
Name: RAD54 like (S. cerevisiae)
RGD ID: 1321601
MGI Page MGI
Description: Predicted to enable ATP-dependent DNA/DNA annealing activity and DNA translocase activity. Acts upstream of or within several processes, including determination of adult lifespan; double-strand break repair via homologous recombination; and response to ionizing radiation. Predicted to be located in nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Is expressed in several structures, including brain ventricular layer; incisor; metencephalon rest of alar plate marginal layer; submandibular gland primordium; and thymus primordium. Used to study sclerocornea. Human ortholog(s) of this gene implicated in breast cancer; disease of cellular proliferation; non-Hodgkin lymphoma; and pancreatic cancer. Orthologous to human RAD54L (RAD54 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA repair and recombination protein RAD54-like; mHR54; mRAD54; RAD; RAD54; RAD54 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,951,458 - 115,980,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,951,461 - 115,980,887 (-)EnsemblGRCm39 Ensembl
GRCm384116,094,261 - 116,123,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,094,264 - 116,123,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,769,560 - 115,796,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,594,907 - 115,621,591 (-)NCBIMGSCv36mm8
Celera4114,835,105 - 114,861,841 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
3-methylcholanthrene  (EXP)
4-hydroxynon-2-enal  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
Biflorin  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
cisplatin  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclophosphamide  (ISO)
DDE  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
doxorubicin  (EXP)
Enterolactone  (ISO)
epoxiconazole  (EXP)
etoposide  (ISO)
geraniol  (ISO)
imiquimod  (EXP)
lead(0)  (ISO)
lidocaine  (ISO)
MeIQx  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
N(4)-hydroxycytidine  (EXP)
N-acetyl-L-cysteine  (ISO)
niclosamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
succimer  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Significant effect of homologous recombination DNA repair gene polymorphisms on pancreatic cancer survival. Li D, etal., Cancer Res. 2006 Mar 15;66(6):3323-30.
3. Mutations in the RAD54 recombination gene in primary cancers. Matsuda M, etal., Oncogene. 1999 Jun 3;18(22):3427-30.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8805304   PMID:9108475   PMID:9607915   PMID:10209103   PMID:10349636   PMID:10747037   PMID:10757799   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12186839   PMID:12218123  
PMID:12477932   PMID:12520002   PMID:12531026   PMID:12548566   PMID:12727892   PMID:12897131   PMID:14610273   PMID:14691545   PMID:15175260   PMID:15175261   PMID:15489334   PMID:15782199  
PMID:16009599   PMID:16141072   PMID:16141073   PMID:16428451   PMID:16797606   PMID:17036055   PMID:17054727   PMID:17967808   PMID:18353795   PMID:18799693   PMID:19061978   PMID:20150414  
PMID:20167225   PMID:20531307   PMID:21267068   PMID:21602895   PMID:21677750   PMID:21807948   PMID:21873635   PMID:23897709   PMID:26496610   PMID:26876210   PMID:27694478   PMID:29254138  
PMID:30204892   PMID:30606609   PMID:32325033   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Rad54l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,951,458 - 115,980,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,951,461 - 115,980,887 (-)EnsemblGRCm39 Ensembl
GRCm384116,094,261 - 116,123,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,094,264 - 116,123,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,769,560 - 115,796,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,594,907 - 115,621,591 (-)NCBIMGSCv36mm8
Celera4114,835,105 - 114,861,841 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
RAD54L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,247,688 - 46,278,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,246,461 - 46,278,480 (+)EnsemblGRCh38hg38GRCh38
GRCh37146,713,360 - 46,744,145 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,486,004 - 46,516,732 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,425,436 - 46,456,165NCBI
Celera145,000,746 - 45,031,525 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef144,829,132 - 44,859,988 (+)NCBIHuRef
CHM1_1146,830,372 - 46,861,163 (+)NCBICHM1_1
T2T-CHM13v2.0146,124,906 - 46,155,694 (+)NCBIT2T-CHM13v2.0
Rad54l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,812,158 - 134,841,821 (-)NCBIGRCr8
mRatBN7.25129,575,431 - 129,605,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,575,378 - 129,605,070 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,191,515 - 132,221,172 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,946,399 - 133,975,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,968,540 - 133,998,199 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,948,511 - 134,978,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,948,512 - 134,978,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,732,242 - 138,762,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.15136,209,780 - 136,239,533 (+)NCBI
Celera5128,105,213 - 128,134,839 (-)NCBICelera
Cytogenetic Map5q35NCBI
Rad54l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,996,512 - 12,033,490 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,996,512 - 12,033,525 (-)NCBIChiLan1.0ChiLan1.0
RAD54L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,529,512 - 180,575,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,671,110 - 179,717,249 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,549,586 - 45,581,711 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,905,598 - 46,936,532 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,905,598 - 46,936,259 (+)Ensemblpanpan1.1panPan2
RAD54L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,111,168 - 14,139,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,111,157 - 14,139,301 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,234,015 - 14,262,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,264,072 - 14,292,635 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,264,092 - 14,292,579 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,065,329 - 14,093,894 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,133,819 - 14,162,383 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,203,309 - 14,231,866 (-)NCBIUU_Cfam_GSD_1.0
Rad54l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,455,182 - 61,491,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,280,573 - 27,316,428 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,276,570 - 27,316,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD54L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,152,978 - 165,184,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,156,833 - 165,184,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,636,270 - 152,664,106 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAD54L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,510,616 - 86,542,426 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,507,248 - 86,542,663 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,444,520 - 30,476,524 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad54l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,165,780 - 2,193,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,164,711 - 2,194,262 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1397
Count of miRNA genes:623
Interacting mature miRNAs:755
Transcripts:ENSMUST00000102704, ENSMUST00000102705, ENSMUST00000138320, ENSMUST00000139147, ENSMUST00000143089, ENSMUST00000152741
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse

Markers in Region
RH127472  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,096,751 - 116,096,976UniSTSGRCm38
MGSCv374115,769,356 - 115,769,581UniSTSGRCm37
Celera4114,834,901 - 114,835,126UniSTS
Cytogenetic Map4D1UniSTS
AW555107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,096,674 - 116,096,817UniSTSGRCm38
MGSCv374115,769,279 - 115,769,422UniSTSGRCm37
Celera4114,834,824 - 114,834,967UniSTS
Cytogenetic Map4D1UniSTS
Whitehead/MRC_RH41551.49UniSTS
RH124910  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,096,727 - 116,096,807UniSTSGRCm38
MGSCv374115,769,332 - 115,769,412UniSTSGRCm37
Celera4114,834,877 - 114,834,957UniSTS
Cytogenetic Map4D1UniSTS
RH125906  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,096,790 - 116,097,039UniSTSGRCm38
MGSCv374115,769,395 - 115,769,644UniSTSGRCm37
Celera4114,834,940 - 114,835,189UniSTS
Cytogenetic Map4D1UniSTS
Whitehead/MRC_RH41552.81UniSTS
UniSTS:235013  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,096,610 - 116,096,768UniSTSGRCm38
MGSCv374115,769,215 - 115,769,373UniSTSGRCm37
Celera4114,834,760 - 114,834,918UniSTS
Cytogenetic Map4D1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_188962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK017045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY716729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN669448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000102704   ⟹   ENSMUSP00000099765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,954,172 - 115,980,856 (-)Ensembl
GRCm38.p6 Ensembl4116,096,975 - 116,123,659 (-)Ensembl
Ensembl Acc Id: ENSMUST00000102705   ⟹   ENSMUSP00000099766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,954,113 - 115,980,882 (-)Ensembl
GRCm38.p6 Ensembl4116,096,916 - 116,123,685 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,968,497 - 115,969,994 (-)Ensembl
GRCm38.p6 Ensembl4116,111,300 - 116,112,797 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,951,461 - 115,957,255 (-)Ensembl
GRCm38.p6 Ensembl4116,094,264 - 116,100,058 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,975,022 - 115,980,887 (-)Ensembl
GRCm38.p6 Ensembl4116,117,825 - 116,123,690 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4115,967,198 - 115,980,179 (-)Ensembl
GRCm38.p6 Ensembl4116,110,001 - 116,122,982 (-)Ensembl
RefSeq Acc Id: NM_001122958   ⟹   NP_001116430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
GRCm384116,096,955 - 116,123,689 (-)NCBI
MGSCv374115,769,560 - 115,796,295 (-)RGD
Celera4114,835,105 - 114,861,841 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122959   ⟹   NP_001116431
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
GRCm384116,096,955 - 116,123,690 (-)NCBI
MGSCv374115,769,560 - 115,796,295 (-)RGD
Celera4114,835,105 - 114,861,841 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001424844   ⟹   NP_001411773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NM_001424845   ⟹   NP_001411774
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NM_001424846   ⟹   NP_001411775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NM_001424847   ⟹   NP_001411776
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NM_001424848   ⟹   NP_001411777
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NM_009015   ⟹   NP_033041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
GRCm384116,096,955 - 116,123,689 (-)NCBI
MGSCv374115,769,560 - 115,796,295 (-)RGD
Celera4114,835,105 - 114,861,841 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_188962
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394115,951,458 - 115,980,875 (-)NCBI
RefSeq Acc Id: NP_033041   ⟸   NM_009015
- Peptide Label: isoform 1
- UniProtKB: Q8C2C4 (UniProtKB/Swiss-Prot),   Q8BSR5 (UniProtKB/Swiss-Prot),   Q8K3D4 (UniProtKB/Swiss-Prot),   P70270 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116431   ⟸   NM_001122959
- Peptide Label: isoform 1
- UniProtKB: Q8C2C4 (UniProtKB/Swiss-Prot),   Q8BSR5 (UniProtKB/Swiss-Prot),   Q8K3D4 (UniProtKB/Swiss-Prot),   P70270 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116430   ⟸   NM_001122958
- Peptide Label: isoform 1
- UniProtKB: Q8C2C4 (UniProtKB/Swiss-Prot),   Q8BSR5 (UniProtKB/Swiss-Prot),   Q8K3D4 (UniProtKB/Swiss-Prot),   P70270 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000099766   ⟸   ENSMUST00000102705
Ensembl Acc Id: ENSMUSP00000099765   ⟸   ENSMUST00000102704
RefSeq Acc Id: NP_001411774   ⟸   NM_001424845
- Peptide Label: isoform 1
- UniProtKB: Q8K3D4 (UniProtKB/Swiss-Prot),   Q8C2C4 (UniProtKB/Swiss-Prot),   Q8BSR5 (UniProtKB/Swiss-Prot),   P70270 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411777   ⟸   NM_001424848
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001411776   ⟸   NM_001424847
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001411773   ⟸   NM_001424844
- Peptide Label: isoform 1
- UniProtKB: Q8K3D4 (UniProtKB/Swiss-Prot),   Q8C2C4 (UniProtKB/Swiss-Prot),   Q8BSR5 (UniProtKB/Swiss-Prot),   P70270 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411775   ⟸   NM_001424846
- Peptide Label: isoform 2
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70270-F1-model_v2 AlphaFold P70270 1-747 view protein structure

Promoters
RGD ID:6836025
Promoter ID:MM_KWN:39129
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000021123
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,771,591 - 115,773,007 (-)MPROMDB
RGD ID:6836035
Promoter ID:MM_KWN:39131
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:NM_001122959,   NM_009015,   OTTMUST00000021122,   OTTMUST00000021125,   OTTMUST00000071169,   UC008UGD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,796,341 - 115,796,841 (-)MPROMDB
RGD ID:6884284
Promoter ID:EPDNEW_M5593
Type:initiation region
Name:Rad54l_1
Description:Mus musculus RAD54 like , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,123,678 - 116,123,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:894697 AgrOrtholog
Ensembl Genes ENSMUSG00000028702 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000102704 ENTREZGENE
  ENSMUST00000102704.4 UniProtKB/Swiss-Prot
  ENSMUST00000102705 ENTREZGENE
  ENSMUST00000102705.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.10810 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
  SWI2/SNF2 ATPases, N-terminal domain UniProtKB/Swiss-Prot
InterPro Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  SNF2-like_sf UniProtKB/Swiss-Prot
  SNF2/RAD54-like_C UniProtKB/Swiss-Prot
  SNF2_N UniProtKB/Swiss-Prot
  SNF2_RAD54_helicase_repair UniProtKB/Swiss-Prot
KEGG Report mmu:19366 UniProtKB/Swiss-Prot
MGD MGI:894697 ENTREZGENE
NCBI Gene 19366 ENTREZGENE
PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED UniProtKB/Swiss-Prot
  SNF2/RAD54 FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam Helicase_C UniProtKB/Swiss-Prot
  SNF2_N UniProtKB/Swiss-Prot
PhenoGen Rad54l PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
SMART DEXDc UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt P70270 ENTREZGENE
  Q8BSR5 ENTREZGENE
  Q8C2C4 ENTREZGENE
  Q8K3D4 ENTREZGENE
  RAD54_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BSR5 UniProtKB/Swiss-Prot
  Q8C2C4 UniProtKB/Swiss-Prot
  Q8K3D4 UniProtKB/Swiss-Prot