Foxd2os (forkhead box D2, opposite strand) - Rat Genome Database

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Gene: Foxd2os (forkhead box D2, opposite strand) Mus musculus
Analyze
Symbol: Foxd2os
Name: forkhead box D2, opposite strand
RGD ID: 1610469
MGI Page MGI
Description: Is expressed in tail; INTERACTS WITH 4,4'-sulfonyldiphenol; crocidolite asbestos; genistein.
Type: protein-coding (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,766,454 - 114,778,315 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,766,200 - 114,779,166 (+)EnsemblGRCm39 Ensembl
GRCm384114,909,257 - 114,921,118 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4114,909,257 - 114,921,967 (+)EnsemblGRCm38mm10GRCm38
MGSCv374114,581,894 - 114,593,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364114,581,578 - 114,588,901 (+)NCBIMGSCv36mm8
Celera4113,657,074 - 113,668,891 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxd2osMouse4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of FOXD2OS mRNACTDPMID:30951980
Foxd2osMousecrocidolite asbestos increases expressionEXP 6480464Asbestos and Crocidolite results in increased expression of FOXD2OS mRNACTDPMID:29279043
Foxd2osMousegenistein decreases expressionEXP 6480464Genistein results in decreased expression of FOXD2OS mRNACTDPMID:32186404
Foxd2osMousetriptonide decreases expressionEXP 6480464triptonide results in decreased expression of FOXD2OS mRNACTDPMID:33045310


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxd2osMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxd2osMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxd2osMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in Foxd2os
575 total Variants

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:181
Interacting mature miRNAs:191
Transcripts:ENSMUST00000123272, ENSMUST00000144002
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 65 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse

1 to 10 of 65 rows
UniSTS:487655  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384114,907,295 - 114,908,883UniSTSGRCm38
MGSCv374114,579,900 - 114,581,488UniSTSGRCm37
Celera4113,655,080 - 113,656,668UniSTS
Cytogenetic Map4D1UniSTS
cM Map456.5UniSTS







Ensembl Acc Id: ENSMUST00000123272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,454 - 114,778,315 (+)Ensembl
GRCm38.p6 Ensembl4114,909,257 - 114,921,118 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,454 - 114,779,164 (+)Ensembl
GRCm38.p6 Ensembl4114,909,257 - 114,921,967 (+)Ensembl
Ensembl Acc Id: ENSMUST00000242007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,200 - 114,778,088 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,204 - 114,779,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,211 - 114,779,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,241 - 114,779,149 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,297 - 114,779,154 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,454 - 114,779,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,470 - 114,779,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,449 - 114,779,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,461 - 114,779,154 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,474 - 114,779,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,470 - 114,779,160 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,479 - 114,779,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,480 - 114,779,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,480 - 114,779,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,480 - 114,779,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,482 - 114,779,138 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,479 - 114,778,373 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,461 - 114,778,084 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,212 - 114,777,752 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,486 - 114,777,695 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,770,901 - 114,779,149 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4114,766,453 - 114,773,965 (+)Ensembl
RefSeq Acc Id: NR_030721
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394114,766,454 - 114,778,315 (+)NCBI
GRCm384114,909,257 - 114,921,118 (+)NCBI
MGSCv374114,581,894 - 114,593,723 (+)RGD
Celera4113,657,074 - 113,668,891 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RGD ID:6835584
Promoter ID:MM_KWN:39056
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B4
Transcripts:AK148100_9130206I24RIK,   LINCRNA_732,   NM_008593,   OTTMUST00000019479,   OTTMUST00000019480,   UC008UEC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364114,581,316 - 114,581,932 (+)MPROMDB
RGD ID:6884218
Promoter ID:EPDNEW_M5560
Type:initiation region
Name:Foxd2os_1
Description:Mus musculus forkhead box D2, opposite strand , long non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384114,909,257 - 114,909,317EPDNEW
RGD ID:15092751
Promoter ID:EPDNEWNC_M653
Type:initiation region
Name:Foxd2os_1
Description:forkhead box D2, opposite strand [Source:MGISymbol;Acc:MGI:2444065]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384114,909,257 - 114,909,317EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085399 Ensembl
MGD MGI:2444065 ENTREZGENE
NCBI Gene 9130206I24Rik ENTREZGENE
PhenoGen Foxd2os PhenoGen
RNAcentral URS00009AE4D0 RNACentral
  URS00009B78C0 RNACentral
  URS00025F258B RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Foxd2os  forkhead box D2, opposite strand  9130206I24Rik  RIKEN cDNA 9130206I24 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 9130206I24Rik  RIKEN cDNA 9130206I24 gene  Foxd2os  forkhead box D2, opposite strand  Symbol and/or name change 5135510 APPROVED
2013-11-26 Foxd2os  forkhead box D2, opposite strand    Foxd2 opposite strand transcript  Symbol and/or name change 5135510 APPROVED
2013-11-19 Foxd2os  Foxd2 opposite strand transcript  9130206I24Rik  RIKEN cDNA 9130206I24 gene  Symbol and/or name change 5135510 APPROVED