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Gene: Ipp (IAP promoted placental gene) Mus musculus

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Symbol:

Ipp

Name:

IAP promoted placental gene

RGD ID:

1314842

MGI Page

MGI

Description:

Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoskeleton. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and yolk sac endoderm. Orthologous to human IPP (intracisternal A particle-promoted polypeptide).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

actin-binding protein IPP; D4Jhu8; intracisternal A particle-promoted polypeptide; M; Mipp; murine IAP-promoted placenta-expressed protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,364,710 - 116,400,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,364,746 - 116,395,440 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,507,512 - 116,543,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,507,549 - 116,538,243 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,180,154 - 116,210,840 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,027,313 - 116,036,175 (+)	NCBI		MGSCv36	mm8
Celera	4	115,247,652 - 115,278,446 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	amenorrhea		ISO	RGD:1314841	8554872	ClinVar Annotator: match by term: Primary amenorrhea	ClinVar	PMID:21681106
Ipp	Mouse	Charcot-Marie-Tooth disease dominant intermediate C		ISO	RGD:1314841	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate C	ClinVar	PMID:28492532
Ipp	Mouse	developmental and epileptic encephalopathy		ISO	RGD:1314841	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
Ipp	Mouse	early infantile epileptic encephalopathy		ISO	RGD:1314841	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	Colorectal Neoplasms		ISO	RGD:1314841	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:25944804

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	1,2-dimethylhydrazine	affects expression	EXP		6480464	1,2-Dimethylhydrazine affects the expression of IPP mRNA	CTD	PMID:22206623
Ipp	Mouse	17alpha-ethynylestradiol	increases expression	ISO	RGD:1306299	6480464	Ethinyl Estradiol results in increased expression of IPP mRNA	CTD	PMID:29097150
Ipp	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of IPP mRNA	CTD	PMID:21570461
Ipp	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1306299	6480464	Tetrachlorodibenzodioxin results in decreased expression of IPP mRNA	CTD	PMID:33387578
Ipp	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1306299	6480464	Tetrachlorodibenzodioxin results in increased expression of IPP mRNA	CTD	PMID:32109520
Ipp	Mouse	2,4-dinitrotoluene	affects expression	ISO	RGD:1306299	6480464	2,4-dinitrotoluene affects the expression of IPP mRNA	CTD	PMID:21346803
Ipp	Mouse	2,6-dinitrotoluene	affects expression	ISO	RGD:1306299	6480464	2,6-dinitrotoluene affects the expression of IPP mRNA	CTD	PMID:21346803
Ipp	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of IPP mRNA	CTD	PMID:26063408
Ipp	Mouse	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of IPP promoter	CTD	PMID:27312807
Ipp	Mouse	bisphenol A	decreases expression	ISO	RGD:1306299	6480464	bisphenol A results in decreased expression of IPP mRNA	CTD	PMID:25181051
Ipp	Mouse	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of IPP mRNA	CTD	PMID:38685157
Ipp	Mouse	butanal	decreases expression	ISO	RGD:1314841	6480464	butyraldehyde results in decreased expression of IPP mRNA	CTD	PMID:26079696
Ipp	Mouse	cadmium atom	multiple interactions	ISO	RGD:1314841	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of IPP more ...	CTD	PMID:35301059
Ipp	Mouse	cadmium dichloride	decreases expression	ISO	RGD:1314841	6480464	Cadmium Chloride results in decreased expression of IPP mRNA	CTD	PMID:38568856
Ipp	Mouse	cadmium dichloride	multiple interactions	ISO	RGD:1314841	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of IPP more ...	CTD	PMID:35301059
Ipp	Mouse	CGP 52608	multiple interactions	ISO	RGD:1314841	6480464	CGP 52608 promotes the reaction [RORA protein binds to IPP gene]	CTD	PMID:28238834
Ipp	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of IPP mRNA	CTD	PMID:37019170
Ipp	Mouse	choline	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression more ...	CTD	PMID:20938992
Ipp	Mouse	cisplatin	increases expression	ISO	RGD:1314841	6480464	Cisplatin results in increased expression of IPP mRNA	CTD	PMID:27392435
Ipp	Mouse	cisplatin	multiple interactions	ISO	RGD:1314841	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of IPP mRNA	CTD	PMID:27392435
Ipp	Mouse	copper(II) sulfate	decreases expression	ISO	RGD:1314841	6480464	Copper Sulfate results in decreased expression of IPP mRNA	CTD	PMID:19549813
Ipp	Mouse	CU-O LINKAGE	decreases expression	ISO	RGD:1314841	6480464	cupric oxide results in decreased expression of IPP mRNA	CTD	PMID:22077320
Ipp	Mouse	cyclosporin A	decreases expression	ISO	RGD:1314841	6480464	Cyclosporine results in decreased expression of IPP mRNA	CTD	PMID:20106945
Ipp	Mouse	Dibutyl phosphate	affects expression	ISO	RGD:1314841	6480464	di-n-butylphosphoric acid affects the expression of IPP mRNA	CTD	PMID:37042841
Ipp	Mouse	dorsomorphin	multiple interactions	ISO	RGD:1314841	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Ipp	Mouse	epoxiconazole	decreases expression	EXP		6480464	epoxiconazole results in decreased expression of IPP mRNA	CTD	PMID:35436446
Ipp	Mouse	ethyl methanesulfonate	increases expression	ISO	RGD:1314841	6480464	Ethyl Methanesulfonate results in increased expression of IPP mRNA	CTD	PMID:23649840
Ipp	Mouse	folic acid	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression more ...	CTD	PMID:20938992
Ipp	Mouse	gentamycin	decreases expression	ISO	RGD:1306299	6480464	Gentamicins results in decreased expression of IPP mRNA	CTD	PMID:33387578
Ipp	Mouse	GSK-J4	decreases expression	ISO	RGD:1314841	6480464	GSK-J4 results in decreased expression of IPP mRNA	CTD	PMID:29301935
Ipp	Mouse	hydrogen peroxide	decreases expression	ISO	RGD:1314841	6480464	Hydrogen Peroxide results in decreased expression of IPP mRNA	CTD	PMID:18951874
Ipp	Mouse	L-methionine	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression more ...	CTD	PMID:20938992
Ipp	Mouse	leflunomide	decreases expression	ISO	RGD:1314841	6480464	leflunomide results in decreased expression of IPP mRNA	CTD	PMID:28988120
Ipp	Mouse	mercury dichloride	decreases expression	ISO	RGD:1306299	6480464	Mercuric Chloride results in decreased expression of IPP mRNA	CTD	PMID:16507785
Ipp	Mouse	methoxychlor	affects methylation	ISO	RGD:1306299	6480464	Methoxychlor affects the methylation of IPP gene	CTD	PMID:35440735
Ipp	Mouse	methyl methanesulfonate	increases expression	ISO	RGD:1314841	6480464	Methyl Methanesulfonate results in increased expression of IPP mRNA	CTD	PMID:23649840
Ipp	Mouse	methylmercury chloride	decreases expression	ISO	RGD:1314841	6480464	methylmercuric chloride results in decreased expression of IPP mRNA	CTD	PMID:28001369
Ipp	Mouse	nickel atom	decreases expression	ISO	RGD:1314841	6480464	Nickel results in decreased expression of IPP mRNA	CTD	PMID:25583101
Ipp	Mouse	oxaliplatin	decreases expression	ISO	RGD:1306299	6480464	oxaliplatin results in decreased expression of IPP mRNA	CTD	PMID:25729387
Ipp	Mouse	oxaliplatin	multiple interactions	ISO	RGD:1306299	6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of IPP mRNA	CTD	PMID:25729387
Ipp	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of IPP mRNA	CTD	PMID:17562736
Ipp	Mouse	paracetamol	increases expression	ISO	RGD:1306299	6480464	Acetaminophen results in increased expression of IPP mRNA	CTD	PMID:33387578
Ipp	Mouse	perfluorohexanesulfonic acid	decreases expression	EXP		6480464	perfluorohexanesulfonic acid results in decreased expression of IPP mRNA	CTD	PMID:37995155
Ipp	Mouse	phenytoin	increases expression	ISO	RGD:1306299	6480464	Phenytoin results in increased expression of IPP mRNA	CTD	PMID:20345932
Ipp	Mouse	resveratrol	multiple interactions	ISO	RGD:1314841	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of IPP mRNA	CTD	PMID:23557933
Ipp	Mouse	SB 431542	multiple interactions	ISO	RGD:1314841	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Ipp	Mouse	silicon dioxide	decreases expression	ISO	RGD:1314841	6480464	Silicon Dioxide results in decreased expression of IPP mRNA	CTD	PMID:25351596
Ipp	Mouse	temozolomide	decreases expression	ISO	RGD:1314841	6480464	Temozolomide results in decreased expression of IPP mRNA	CTD	PMID:31758290
Ipp	Mouse	thalidomide	decreases expression	EXP		6480464	Thalidomide results in decreased expression of IPP mRNA	CTD	PMID:26217789
Ipp	Mouse	thiram	decreases expression	ISO	RGD:1314841	6480464	Thiram results in decreased expression of IPP mRNA	CTD	PMID:38568856
Ipp	Mouse	topotecan	multiple interactions	ISO	RGD:1306299	6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of IPP mRNA	CTD	PMID:25729387
Ipp	Mouse	topotecan	decreases expression	ISO	RGD:1306299	6480464	Topotecan results in decreased expression of IPP mRNA	CTD	PMID:25729387
Ipp	Mouse	trichloroethene	increases methylation	ISO	RGD:1306299	6480464	Trichloroethylene results in increased methylation of IPP gene	CTD	PMID:27618143
Ipp	Mouse	trichostatin A	decreases expression	ISO	RGD:1314841	6480464	trichostatin A results in decreased expression of IPP mRNA	CTD	PMID:24935251\|PMID:26272509
Ipp	Mouse	trichostatin A	affects expression	ISO	RGD:1314841	6480464	trichostatin A affects the expression of IPP mRNA	CTD	PMID:28542535
Ipp	Mouse	trichostatin A	multiple interactions	ISO	RGD:1314841	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Ipp	Mouse	trimellitic anhydride	increases expression	EXP		6480464	trimellitic anhydride results in increased expression of IPP mRNA	CTD	PMID:19042947
Ipp	Mouse	triphenyl phosphate	increases expression	ISO	RGD:1306299	6480464	triphenyl phosphate results in increased expression of IPP mRNA	CTD	PMID:30589522
Ipp	Mouse	triphenyl phosphate	affects expression	ISO	RGD:1314841	6480464	triphenyl phosphate affects the expression of IPP mRNA	CTD	PMID:37042841
Ipp	Mouse	urethane	decreases expression	ISO	RGD:1314841	6480464	Urethane results in decreased expression of IPP mRNA	CTD	PMID:28818685
Ipp	Mouse	valproic acid	affects expression	ISO	RGD:1314841	6480464	Valproic Acid affects the expression of IPP mRNA	CTD	PMID:25979313
Ipp	Mouse	valproic acid	decreases expression	ISO	RGD:1314841	6480464	Valproic Acid results in decreased expression of IPP mRNA	CTD	PMID:23179753\|PMID:26272509\|PMID:27188386\|PMID:28001369\|PMID:29154799
Ipp	Mouse	valproic acid	multiple interactions	ISO	RGD:1314841	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Ipp	Mouse	vitamin E	decreases expression	ISO	RGD:1314841	6480464	Vitamin E results in decreased expression of IPP mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	proteasome-mediated ubiquitin-dependent protein catabolic process	involved_in	IBA	PANTHER:PTN001561260\|MGI:1919580\|UniProtKB:Q9UH77\|FB:FBgn0038475\|UniProtKB:Q86V97\|FB:FBgn0037978\|UniProtKB:Q9Y2M5\|UniProtKB:Q14145\|FB:FBgn0040230\|UniProtKB:Q8WVZ9	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	Cul3-RING ubiquitin ligase complex	part_of	IBA	PANTHER:PTN001561260\|WB:WBGene00020952\|UniProtKB:Q9P2G9\|MGI:1858732\|UniProtKB:Q6TFL4\|MGI:1924363\|UniProtKB:Q9H2C0\|UniProtKB:Q14145\|UniProtKB:Q8IXQ5\|FB:FBgn0038475\|UniProtKB:Q86V97\|FB:FBgn0040038\|MGI:1919580\|UniProtKB:Q9UH77\|UniProtKB:O60662\|FB:FBgn0040230\|UniProtKB:Q9UJP4\|UniProtKB:Q8WVZ9\|UniProtKB:Q8NFY9\|UniProtKB:Q53G59\|FB:FBgn0037978\|UniProtKB:Q9Y2M5	2290270		GO_Central	GO_REF:0000033
Ipp	Mouse	cytoplasm	is_active_in	IBA	PANTHER:PTN001561260\|UniProtKB:Q13939\|UniProtKB:Q14145\|UniProtKB:Q8IXQ5\|MGI:2181067\|MGI:1858732\|UniProtKB:Q6TFL4\|MGI:2683854\|MGI:1924363\|UniProtKB:Q9NR64\|UniProtKB:Q9H2C0\|UniProtKB:Q8IY47\|UniProtKB:Q53G59\|UniProtKB:Q9Y2M5\|UniProtKB:Q9Y6Y0\|RGD:708444\|MGI:3045316\|UniProtKB:Q86V97\|MGI:1919580\|UniProtKB:Q9UH77\|UniProtKB:O60662	2290270		GO_Central	GO_REF:0000033
Ipp	Mouse	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	2290270		UniProt	GO_REF:0000043
Ipp	Mouse	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	actin binding	enables	IEA	UniProtKB-KW:KW-0009	2290270		UniProt	GO_REF:0000043
Ipp	Mouse	protein binding	enables	ISO	UniProtKB:Q96ED9-2	9068941	PMID:32296183	IntAct	PMID:32296183
Ipp	Mouse	ubiquitin-like ligase-substrate adaptor activity	enables	IBA	PANTHER:PTN001561260\|UniProtKB:Q9UH77\|FB:FBgn0038475\|UniProtKB:O95198\|FB:FBgn0037978\|UniProtKB:Q14145\|FB:FBgn0040230\|UniProtKB:Q8IY47	2290270		GO_Central	GO_REF:0000033

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ipp	Mouse	abnormal sleep behavior		IEA		5509061		MGI
Ipp	Mouse	decreased circulating chloride level		IEA		5509061		MGI
Ipp	Mouse	decreased circulating glucose level		IEA		5509061		MGI
Ipp	Mouse	decreased leukocyte cell number		IEA		5509061		MGI
Ipp	Mouse	impaired righting response		IEA		5509061		MGI
Ipp	Mouse	increased circulating alkaline phosphatase level		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:1905535	PMID:1906605	PMID:7678343	PMID:8432546	PMID:8668351	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11536049	PMID:12466851	PMID:14610273
PMID:16141072	PMID:16141073	PMID:21267068	PMID:24194600	PMID:27626380	PMID:32554809	PMID:38355793

Ipp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,364,710 - 116,400,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,364,746 - 116,395,440 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,507,512 - 116,543,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,507,549 - 116,538,243 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,180,154 - 116,210,840 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,027,313 - 116,036,175 (+)	NCBI		MGSCv36	mm8
Celera	4	115,247,652 - 115,278,446 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.2	NCBI

IPP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	45,694,324 - 45,750,653 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	45,694,324 - 45,750,653 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,159,996 - 46,216,325 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	45,936,977 - 45,984,720 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	45,894,584 - 45,924,153	NCBI
Celera	1	44,443,977 - 44,504,167 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,271,018 - 44,331,506 (-)	NCBI		HuRef
CHM1_1	1	46,277,171 - 46,334,044 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	45,566,668 - 45,627,842 (-)	NCBI		T2T-CHM13v2.0

Ipp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,199,198 - 135,237,912 (+)	NCBI		GRCr8
mRatBN7.2	5	129,962,528 - 130,001,237 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,962,643 - 130,001,242 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,589,694 - 132,623,162 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,344,291 - 134,377,759 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,366,716 - 134,400,185 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,351,767 - 135,390,363 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,351,816 - 135,388,083 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,148,032 - 139,186,535 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,794,175 - 136,825,352 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,796,547 - 136,830,178 (+)	NCBI
Celera	5	128,494,428 - 128,527,069 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

Ipp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,562,756 - 12,589,939 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,562,824 - 12,589,976 (+)	NCBI	ChiLan1.0	ChiLan1.0

IPP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	181,056,615 - 181,117,886 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	180,200,865 - 180,259,198 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	44,993,669 - 45,052,411 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,351,490 - 46,408,224 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,351,496 - 46,408,224 (-)	Ensembl	panpan1.1		panPan2

IPP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,621,969 - 14,669,728 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,621,600 - 14,669,561 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,743,360 - 14,790,739 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,776,148 - 14,824,008 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,776,242 - 14,823,893 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,573,867 - 14,621,282 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,643,401 - 14,691,167 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,713,121 - 14,761,048 (+)	NCBI		UU_Cfam_GSD_1.0

Ipp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,977,685 - 61,009,696 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	26,801,546 - 26,835,116 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	26,802,467 - 26,834,449 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IPP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	165,671,174 - 165,709,775 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	165,671,053 - 165,702,078 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IPP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,060,486 - 87,100,653 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,061,075 - 87,099,415 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,869,144 - 29,909,944 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ipp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	1,588,909 - 1,628,301 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	1,585,741 - 1,628,375 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ipp
1759 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	445
Count of miRNA genes:	161
Interacting mature miRNAs:	179
Transcripts:	ENSMUST00000030461, ENSMUST00000106479
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13824982	Svwq1_m	seminal vesicle weight QTL 1 (mouse)					4	89888237	118857197	Mouse
11532714	Sluc43_m	susceptibility to lung cancer 43 (mouse)					4	46642108	123127211	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112824389	146824389	Mouse
12904002	Opfaq9_m	open field activity QTL 9 (mouse)					4	92975790	126975790	Mouse
4141623	W6q13_m	weight 6 weeks QTL 13 (mouse)			Not determined			88982069	140468203	Mouse
12910797	Pwgrq4_m	pre-weaning growth rate QTL 4 (mouse)					4	105835310	141433838	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
1357726	Lnopy1_m	lens opacity 1 (mouse)			Not determined		4	85428838	119429037	Mouse
12910794	Pwbwq8_m	post-weaning body weight QTL 8 (mouse)					4	105835310	141433838	Mouse
14696689	Gdq2_m	grooming duration QTL 2, females (mouse)					4	100857197	124893793	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111009051	145009280	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107791564	141791756	Mouse
12910813	Pwbwq4_m	pre-weaning body weight QTL 4 (mouse)					4	105835310	141433838	Mouse
4141093	W3q17_m	weight 3 weeks QTL 17 (mouse)			Not determined			88982069	140468203	Mouse
12910808	Pwbwq9_m	post-weaning body weight QTL 9 (mouse)					4	105835310	141433838	Mouse
27095939	Ulnl9_m	ulna length 9, 16 week (mouse)					4	65318237	118857197	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116154678	150154782	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300663	Start2_m	startle response 2 (mouse)			Not determined		4	107264957	141265153	Mouse
1300918	Stheal4_m	soft tissue heal 4 (mouse)			Not determined		4	89969627	123969747	Mouse
1301556	Cd4vts1_m	CD4 virgin T cell subset 1 (mouse)			Not determined		4	85428838	119429037	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
10412072	Ssen1_m	suseptibility to Sendai virus 1 (mouse)			Not determined		4	109658132	133154782	Mouse
1301930	Papg1_m	pulmonary adenoma progression 1 (mouse)			Not determined		4	85781167	119781279	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
13208565	Bmiq6_m	body mass index QTL 6 (mouse)					4	110857197	125893793	Mouse
1300655	Nidds_m	non-insulin-dependent diabetes mellitus in SJL (mouse)			Not determined		4	115030777	129465915	Mouse
1300781	Lith8_m	lithogenic gene 8 (mouse)			Not determined		4	107264957	141265153	Mouse
39128212	Lwq21_m	liver weight QTL 21 (mouse)					4	88982069	140468203	Mouse
1300689	Dob1_m	Dietary obesity 1 (mouse)			Body weight		4	101574601	123127211	Mouse
27226716	Metcl2_m	metatarsal-calcaneal length 2, 5 week (mouse)					4	88118237	118557197	Mouse
1301847	Fecq2_m	fecundity QTL 2 (mouse)			Not determined		4	100071971	134072206	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
1301597	Anxty_m	anxiety (mouse)			Not determined		4	74137574	128009280	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
4141549	W10q10_m	weight 10 weeks QTL 10 (mouse)			Not determined			88982069	140468203	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138342753	Mouse
1300809	Ccrs2_m	corpus callosum hemisphere surface size 2 (mouse)			Not determined		4	107264957	141265153	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
1301106	Skts7_m	skin tumor susceptibility 7 (mouse)			Not determined		4	100071971	134072206	Mouse
1301233	Sbw2_m	splenomegaly-NZB x NZW 2 (mouse)			Not determined		4	94957579	128009280	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108477692	142477692	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108477692	142477692	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108477692	142477692	Mouse
27095924	Pglq2_m	pelvic girdle length QTL 2, 5 week (mouse)					4	69118237	130727311	Mouse
1301118	Bbaa23_m	B.burgdorferi-associated arthritis 23 (mouse)			Not determined		4	85781167	119781279	Mouse
15039368	Nmrs19_m	NAFLD-associated magnetic resonance shift 19 (mouse)					4	90882780	124882780	Mouse
27095917	Scvln14_m	sacral vertebrae length 2, 16 week (mouse)					4	68018237	130277062	Mouse
1301731	Cafq2_m	caffeine metabolism QTL 2 (mouse)			Not determined		4	94732255	128732454	Mouse
4141900	Skts-fp1_m	skin tumor susceptibility in FVB and PWK 1 (mouse)			Not determined		4	53550839	124055180	Mouse
15039382	Ltgq7_m	liver triglyceride QTL 7 (mouse)					4	105705794	139705794	Mouse
15039377	Bw45_m	body weight QTL 45 (mouse)					4	105705794	139705794	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111009051	145009280	Mouse
12880433	Fgf23lq1_m	FGF23 serum level QTL 1 (mouse)					4	101157197	135157197	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112523489	146523489	Mouse
1300580	Lbw2_m	lupus NZB x NZW 2 (mouse)			Not determined		4	98545539	128009280	Mouse
15039378	Adip30_m	adiposity 30 (mouse)					4	105705794	139705794	Mouse
1301867	Idd11_m	insulin dependent diabetes susceptibility 11 (mouse)			Not determined		4	83604870	117605006	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
27095905	Scvln3_m	sacral vertebrae length 2, 5 week (mouse)					4	55600000	128993793	Mouse
1357800	Tgq3_m	triglyceride QTL 3 (mouse)			Not determined		4	107055093	141055180	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112182386	146182386	Mouse
11553870	Cmmm_m	carcinoma modifier of MSM (mouse)					4	90590668	124590781	Mouse
1301996	Mmtg2_m	modifier of mammary tumor growth 2 (mouse)			Not determined		4	116270979	124055180	Mouse

X58523

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	116,537,989 - 116,538,139	UniSTS	GRCm38
MGSCv37	4	116,210,594 - 116,210,744	UniSTS	GRCm37
Celera	4	115,278,200 - 115,278,350	UniSTS
Cytogenetic Map	4	D1	UniSTS
cM Map	4	51.4	UniSTS
Whitehead_YAC	4		UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001418990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_008389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006502810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036163740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF285178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK042290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK131718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL669953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X58523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X58524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000030461 ⟹ ENSMUSP00000030461

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	116,364,749 - 116,395,440 (+)	Ensembl
GRCm38.p6 Ensembl	4	116,507,552 - 116,538,243 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000106479 ⟹ ENSMUSP00000102088

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	116,364,746 - 116,395,432 (+)	Ensembl
GRCm38.p6 Ensembl	4	116,507,549 - 116,538,235 (+)	Ensembl

RefSeq Acc Id:

NM_001418990 ⟹ NP_001405919

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,808 - 116,398,614 (+)	NCBI

RefSeq Acc Id:

NM_001418991 ⟹ NP_001405920

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,808 - 116,381,742 (+)	NCBI

RefSeq Acc Id:

NM_001418992 ⟹ NP_001405921

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,808 - 116,374,554 (+)	NCBI

RefSeq Acc Id:

NM_001418993 ⟹ NP_001405922

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,808 - 116,374,554 (+)	NCBI

RefSeq Acc Id:

NM_008389 ⟹ NP_032415

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,808 - 116,395,706 (+)	NCBI
GRCm38	4	116,507,549 - 116,538,235 (+)	NCBI
MGSCv37	4	116,180,154 - 116,210,840 (+)	RGD
Celera	4	115,247,652 - 115,278,446 (+)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

AGCACTCGCAGTCACCTGTCACCAAAGACTGTCCCCGCCCCCTCCGCTGCCTGCCTGCGCGCGCAGAGCACCGGAGGGCGCCGGCGGGAAGGGACGCGGCGGGACAGAAGCAGATAATGGGCAACAGT
GTCTTTCATTAATCTGTGATCACCATGTCTAAGGAGGAGTGCCCCAAGGCTGCTGACAATTCATTCTCCTCTGACAAACATGCCCAGCTCATCTTGGCGCAGATGAACAAAATGAGAAGTGGACAGCA
TTTCTGTGATGTGCAGCTCCAGGTGGGGAAGGAAACCTTCCAAGTCCATCGGCTGGTCCTGGCCGCCAGCAGTCCGTACTTTGCAGCTTTGTTCACTGGAGGAATGAAAGAGTCTTCAAAAGATGTTG
TACAGATTCTAGGAGTTGAAGCTGGAATCTTTCAGTTACTTCTAGATTTCATTTATACAGGAGTAGTGAACATAGCTGTGACTAATGTCCAGGAGTTGATTGTTGCAGCAGACATGCTACAGTTGACT
GAAGTTGTTAATCTTTGCTGTGATTTTCTGAAAGGACAAATTGATCCACAGAACTGCATTGGACTCTTTCAGTTCTCTGAGCAAATTGCCTGCCATGATCTTTTGGAATTTACAGAAAATTATATTCA
TGTCCATTTCTTGGAGGTTCATACTGGGGAAGAGTTCCTCGGGCTTACAAAAGATCAGCTGATCAAAATTTTACGAAGTGAAGAGCTTAGCATTGAAGATGAATACCAAGTCTTCTTAGCTGCAATGC
AGTGGATTCTTAAAGACCTGGGAAAGAGAAGAAAACATGTGGTGGAAGTATTAGATCCAGTTCGATTCCCCTTGTTACCATCTCAGAGGCTTTTAAAGTACATAGAAGGAGTATCTGATTTTAATCTT
CGAGTTGCCCTGCAAACACTTTTGAAAGAGTACTGTGAGGTCTGCAAGTCTCCCAAAGAGAACAAGTTTTGTAGTTTCCTGCAGACATCTAAAGTTCGACCTCGGAAGAAAGCAAGAAAATATCTGTA
TGCAGTAGGTGGCTATACGCGGTTGCAGGGTGGCCGTTGGAGTGATAGCAGAGCCCTCAGCTGCGTAGAACGTTTTGATACCTTCAGCCAGTACTGGACCACTGTATCTTCACTTCATCAGGCTCGGT
GTGGACTCGGAGTTGCAGTTGTAGGAGGGATGGTCTATGCTATTGGAGGAGAAAAGGATTCGATGATCTTTGACTGTACTGAGTGTTATGATCCAGTTACTAAACAATGGACAACTGTTGCTTCAATG
AATCACCCCCGCTGTGGATTGGGAGTATGTGTGTGCTACGGGGCAATCTATGCTTTGGGTGGGTGGGTTGGAGCTGAGATCGGCAACACCATTGAGCGGTTTGATCCTGATGAGAATAAGTGGGAAGT
GGTGGGCAGCATGGCAGTGTCACGCTACTACTTTGGGTGCTGTGAGATGCAAGGTTTAATTTATGCAGTTGGAGGAATCAGCAATGAGGGGCTAGAGCTCCGTTCCTTTGAGGTTTATGATCCACTTT
CCAAGCGCTGGTCTCCACTTCCTCCTATGGGAACCAGAAGAGCGTATCTTGGGGTGGCAGCACTCAATGACTGCATCTATGCTATTGGAGGGTGGAATGAGACACAAGATGCCCTTCATACTGTAGAA
AAGTACTCCTTCGAAGAGGAAAAGTGGGTTGAAGTTGCTTCAATGAAAGTTCCTAGAGCAGGCATGTGTGCTGTGACAGTCAATGGTCTTCTGTATGTCTCTGGAGGCCGGTCTTCTAGCCATGATTT
CTTGGCCCCAGGTACTTTGGACTCAGTTGAAGTTTACAACCCTCATTCAGATACATGGACGGAAATTGGTAATATGATCACTAGTCGTTGTGAAGGGGGTGTTGCTGTACTGTGACAGAGAAGGCACA
AAAGCACAAGGAACATTTGAAAATGTAGGTTCTGACCATTTGCAAATCAAACATATATTTGTGATATGATCTTCTGATTCTTTTGAGTATTCCATGTATTGAATAGATAGATAAGTAAAGAGTGATTT
TTCTAAAAATTTGAATTAAAATGGATATGTAATATATCTTAAAATTAATAAAGTACACTTATAAATTTGC

hide sequence

RefSeq Acc Id:

XM_006502810 ⟹ XP_006502873

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,710 - 116,400,607 (+)	NCBI
GRCm38	4	116,507,512 - 116,543,410 (+)	NCBI

Sequence:

show sequence

AGAAGGTTCCCGCATCAGCGCCGAAGCTGCGCCTTCAGCACTCGCAGTCACCTGTCACCAAAGACTGTCCCCGCCCCCTCCGCTGCCTGCCTGCGCGCGCAGAGCACCGGAGGGCGCCGGCGGGAAGG
GACGCGGCGGGACAGAAGCAGATAATGGGCAACAGTGTCTTTCATTAATCTGTGATCACCATGTCTAAGGAGGAGTGCCCCAAGGCTGCTGACAATTCATTCTCCTCTGACAAACATGCCCAGCTCAT
CTTGGCGCAGATGAACAAAATGAGAAGTGGACAGCATTTCTGTGATGTGCAGCTCCAGGTGGGGAAGGAAACCTTCCAAGTCCATCGGCTGGTCCTGGCCGCCAGCAGTCCGTACTTTGCAGCTTTGT
TCACTGGAGGAATGAAAGAGTCTTCAAAAGATGTTGTACAGATTCTAGGAGTTGAAGCTGGAATCTTTCAGTTACTTCTAGATTTCATTTATACAGGAGTAGTGAACATAGCTGTGACTAATGTCCAG
GAGTTGATTGTTGCAGCAGACATGCTACAGTTGACTGAAGTTGTTAATCTTTGCTGTGATTTTCTGAAAGGACAAATTGATCCACAGAACTGCATTGGACTCTTTCAGTTCTCTGAGCAAATTGCCTG
CCATGATCTTTTGGAATTTACAGAAAATTATATTCATGTCCATTTCTTGGAGGTTCATACTGGGGAAGAGTTCCTCGGGCTTACAAAAGATCAGCTGATCAAAATTTTACGAAGTGAAGAGCTTAGCA
TTGAAGATGAATACCAAGTCTTCTTAGCTGCAATGCAGTGGATTCTTAAAGACCTGGGAAAGAGAAGAAAACATGTGGTGGAAGTATTAGATCCAGTTCGATTCCCCTTGTTACCATCTCAGAGGCTT
TTAAAGTACATAGAAGGAGTATCTGATTTTAATCTTCGAGTTGCCCTGCAAACACTTTTGAAAGAGTACTGTGAGGTCTGCAAGTCTCCCAAAGAGAACAAGTTTTGTAGTTTCCTGCAGACATCTAA
AGTTCGACCTCGGAAGAAAGCAAGAAAATATCTGTATGCAGTAGGTGGCTATACGCGGTTGCAGGGTGGCCGTTGGAGTGATAGCAGAGCCCTCAGCTGCGTAGAACGTTTTGATACCTTCAGCCAGT
ACTGGACCACTGTATCTTCACTTCATCAGGCTCGGTGTGGACTCGGAGTTGCAGTTGTAGGAGGGATGGTCTATGCTATTGGAGGAGAAAAGGATTCGATGATCTTTGACTGTACTGAGTGTTATGAT
CCAGTTACTAAACAATGGACAACTGTTGCTTCAATGAATCACCCCCGCTGTGGATTGGGAGTATGTGTGTGCTACGGGGCAATCTATGCTTTGGGTGGGTGGGTTGGAGCTGAGATCGGCAACACCAT
TGAGCGGTTTGATCCTGATGAGAATAAGTGGGAAGTGGTGGGCAGCATGGCAGTGTCACGCTACTACTTTGGGTGCTGTGAGATGCAAGGTTTAATTTATGCAGTTGGAGGAATCAGCAATGAGGGGC
TAGAGCTCCGTTCCTTTGAGGTTTATGATCCACTTTCCAAGCGCTGGTCTCCACTTCCTCCTATGGGAACCAGAAGAGCGTATCTTGGGGTGGCAGCACTCAATGACTGCATCTATGCTATTGGAGGG
TGGAATGAGACACAAGATGCCCTTCATACTGTAGAAAAGTACTCCTTCGAAGAGGAAAAGTGGGTTGAAGTTGCTTCAATGAAAGTTCCTAGAGCAGGCATGTGTGCTGTGACAGTCAATGGTCTTCT
GTATGTCTCTGGAGGCCGGTCTTCTAGCCATGATTTCTTGGCCCCAGTATGCTACAGAAAGTCAAGAAAAGGGCTGAGAAGATGGCTTGATGCTTAAATGTGATGACCAGAGTTCAGATCTCATGAAT
TCACTACAATGCTGGTTAAACATCTTCAGGGCAAGCTGCTATCAAGACTCTCCACATGAACCACTTCTGGGCTTGTCCCCACATCAGTGATTAAAATGGAAGAGTGACAGTGACAGAGAATGATCCCT
GACGTTTACCTGGGTGTAGTGGCTATTCCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATC
TTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCGAGTTAAGGAACACACCTTTAATCTGGGCTATGCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTT
AATCTGGGCTATGCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTTTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTGCTCC
TTTGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACAATTGTTGGGAATTAGGCTGCCGACTGTAAGTCATCAATAAATTCCTTTACTATTTA
GAGATTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGAAGTTGGTACCAGGAGTGGTTCTAGAGTAACAGAAGTACAAGGATGAATCTTTTAAAATTCTGGAATTGGCTTGTTGATC
CACCAGCACTTTCAACTATTGAAACCTCTCCAGATTCTCTCCCTCCTGGGAGCTCAGAGAATTTTGAAGACCCATGGTTGAAACTATATTCCGAACTTAAAGAAGCTAATGCCCTTGATTTTCTTAAT
GAATTAGGTGATTCAGTGCACAAAGCTTTCTACAAGATGGGGAAAAAATCGAAAAATGATTTTACTGGCTGGCTGCTCTTAGTATCTGTGGAAAAAATGATGAATGAAAGGAAGGAGTTGTGTGATAA
AATCGAAAGGCTCCAGACACAAGTAAACGATCTAAAAG

hide sequence

RefSeq Acc Id:

XM_036163740 ⟹ XP_036019633

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	116,364,710 - 116,398,038 (+)	NCBI

Sequence:

show sequence

AGAAGGTTCCCGCATCAGCGCCGAAGCTGCGCCTTCAGCACTCGCAGTCACCTGTCACCAAAGA
CTGTCCCCGCCCCCTCCGCTGCCTGCCTGCGCGCGCAGAGCACCGGAGGGCGCCGGCGGGAAGGGACGCGGCGGGACAGAAGCAGATAATGGGCAACAGTGTCTTTCATTAATCTGTGATCACCATGT
CTAAGGAGGAGTGCCCCAAGGCTGCTGACAATTCATTCTCCTCTGACAAACATGCCCAGCTCATCTTGGCGCAGATGAACAAAATGAGAAGTGGACAGCATTTCTGTGATGTGCAGCTCCAGGTGGGG
AAGGAAACCTTCCAAGTCCATCGGCTGGTCCTGGCCGCCAGCAGTCCGTACTTTGCAGCTTTGTTCACTGGAGGAATGAAAGAGTCTTCAAAAGATGTTGTACAGATTCTAGGAGTTGAAGCTGGAAT
CTTTCAGTTACTTCTAGATTTCATTTATACAGGAGTAGTGAACATAGCTGTGACTAATGTCCAGGAGTTGATTGTTGCAGCAGACATGCTACAGTTGACTGAAGTTGTTAATCTTTGCTGTGATTTTC
TGAAAGGACAAATTGATCCACAGAACTGCATTGGACTCTTTCAGTTCTCTGAGCAAATTGCCTGCCATGATCTTTTGGAATTTACAGAAAATTATATTCATGTCCATTTCTTGGAGGTTCATACTGGG
GAAGAGTTCCTCGGGCTTACAAAAGATCAGCTGATCAAAATTTTACGAAGTGAAGAGCTTAGCATTGAAGATGAATACCAAGTCTTCTTAGCTGCAATGCAGTGGATTCTTAAAGACCTGGGAAAGAG
AAGAAAACATGTGGTGGAAGTATTAGATCCAGTTCGATTCCCCTTGTTACCATCTCAGAGGCTTTTAAAGTACATAGAAGGAGTATCTGATTTTAATCTTCGAGTTGCCCTGCAAACACTTTTGAAAG
AGTACTGTGAGGTCTGCAAGTCTCCCAAAGAGAACAAGTTTTGTAGTTTCCTGCAGACATCTAAAGTTCGACCTCGGAAGAAAGCAAGAAAATATCTGTATGCAGTAGGTGGCTATACGCGGTTGCAG
GGTGGCCGTTGGAGTGATAGCAGAGCCCTCAGCTGCGTAGAACGTTTTGATACCTTCAGCCAGTACTGGACCACTGTATCTTCACTTCATCAGGCTCGGTGTGGACTCGGAGTTGCAGTTGTAGGAGG
GATGGTCTATGCTATTGGAGGAGAAAAGGATTCGATGATCTTTGACTGTACTGAGTGTTATGATCCAGTTACTAAACAATGGACAACTGTTGCTTCAATGAATCACCCCCGCTGTGGATTGGGAGTAT
GTGTGTGCTACGGGGCAATCTATGCTTTGGGTGGGTGGGTTGGAGCTGAGATCGGCAACACCATTGAGCGGTTTGATCCTGATGAGAATAAGTGGGAAGTGGTGGGCAGCATGGCAGTGTCACGCTAC
TACTTTGGGTGCTGTGAGATGCAAGGTTTAATTTATGCAGTTGGAGGAATCAGCAATGAGGGGCTAGAGCTCCGTTCCTTTGAGGTTTATGATCCACTTTCCAAGCGCTGGTCTCCACTTCCTCCTAT
GGGAACCAGAAGAGCGTATCTTGGGGTGGCAGCACTCAATGACTGCATCTATGCTATTGGAGGGTGGAATGAGACACAAGATGCCCTTCATACTGTAGAAAAGTACTCCTTCGAAGAGGAAAAGTGGG
TTGAAGTTGCTTCAATGAAAGTTCCTAGAGCAGGCATGTGTGCTGTGACAGTCAATGGTCTTCTGTATGTCTCTGGAGGCCGGTCTTCTAGCCATGATTTCTTGGCCCCAGCAACCACATGGTGGCTC
ACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGGTATAGTGTACTCATATACATAAAATAAACCTTAAAAAAAAAGAATGTACTAATTAATAAAATTCTAACTATTTTC
TTTTCTTTGTATTAACTTAGTTAATTAGCATTACTGGATTACCAAACTGTAATAGTATTACACTGGCTTTTGATTTTAACTTTAGGAATGTATGCATTTAGTTCCATTTTCAGAGAAGTTAATTAAAG
TGATCTTTCTCCAAAATGTTTGGAAATGTCA

hide sequence


Protein RefSeqs	NP_001405919	(Get FASTA)	NCBI Sequence Viewer
	NP_001405920	(Get FASTA)	NCBI Sequence Viewer
	NP_001405921	(Get FASTA)	NCBI Sequence Viewer
	NP_001405922	(Get FASTA)	NCBI Sequence Viewer
	NP_032415	(Get FASTA)	NCBI Sequence Viewer
	XP_006502873	(Get FASTA)	NCBI Sequence Viewer
	XP_036019633	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK00278	(Get FASTA)	NCBI Sequence Viewer
	BAC31217	(Get FASTA)	NCBI Sequence Viewer
	BAE20777	(Get FASTA)	NCBI Sequence Viewer
	CAA41413	(Get FASTA)	NCBI Sequence Viewer
	CAA41414	(Get FASTA)	NCBI Sequence Viewer
	EDL30608	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000030461.5
	ENSMUSP00000102088
	ENSMUSP00000102088.2
GenBank Protein	P28575	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_032415 ⟸ NM_008389
- Peptide Label:	isoform a
- UniProtKB:	Q3V2M0 (UniProtKB/Swiss-Prot), P28575 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSKEECPKAADNSFSSDKHAQLILAQMNKMRSGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFTGGMKESSKDVVQILGVEAGIFQLLLDFIYTGVVNIAVTNVQELIVAADMLQLTEVVNLCCD FLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHTGEEFLGLTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPVRFPLLPSQRLLKYIEGVSDFNLRVALQTLL KEYCEVCKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVVGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLG VCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGSMAVSRYYFGCCEMQGLIYAVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSFEEEK WVEVASMKVPRAGMCAVTVNGLLYVSGGRSSSHDFLAPGTLDSVEVYNPHSDTWTEIGNMITSRCEGGVAVL hide sequence

RefSeq Acc Id:

XP_006502873 ⟸ XM_006502810

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSKEECPKAADNSFSSDKHAQLILAQMNKMRSGQHFCDVQLQVGKETFQVHRLVLAASSPYFAALFTGGMKESSKDVVQILGVEAGIFQLLLDFIYTGVVNIAVTNVQELIVAADMLQLTEVVNLCCD
FLKGQIDPQNCIGLFQFSEQIACHDLLEFTENYIHVHFLEVHTGEEFLGLTKDQLIKILRSEELSIEDEYQVFLAAMQWILKDLGKRRKHVVEVLDPVRFPLLPSQRLLKYIEGVSDFNLRVALQTLL
KEYCEVCKSPKENKFCSFLQTSKVRPRKKARKYLYAVGGYTRLQGGRWSDSRALSCVERFDTFSQYWTTVSSLHQARCGLGVAVVGGMVYAIGGEKDSMIFDCTECYDPVTKQWTTVASMNHPRCGLG
VCVCYGAIYALGGWVGAEIGNTIERFDPDENKWEVVGSMAVSRYYFGCCEMQGLIYAVGGISNEGLELRSFEVYDPLSKRWSPLPPMGTRRAYLGVAALNDCIYAIGGWNETQDALHTVEKYSFEEEK
WVEVASMKVPRAGMCAVTVNGLLYVSGGRSSSHDFLAPVCYRKSRKGLRRWLDA

hide sequence

Ensembl Acc Id:

ENSMUSP00000102088 ⟸ ENSMUST00000106479

Ensembl Acc Id:

ENSMUSP00000030461 ⟸ ENSMUST00000030461

RefSeq Acc Id:	XP_036019633 ⟸ XM_036163740
- Peptide Label:	isoform X2

Protein Domains

BTB

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P28575-F1-model_v2	AlphaFold	P28575	1-584	view protein structure

RGD ID:

6835517

Promoter ID:

MM_KWN:39157

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000030461, NM_008389

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	116,179,929 - 116,180,429 (+)	MPROMDB

RGD ID:

6884300

Promoter ID:

EPDNEW_M5601

Type:

multiple initiation site

Name:

Ipp_1

Description:

Mus musculus IAP promoted placental gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	116,507,613 - 116,507,673	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000028696	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000030461.5	UniProtKB/Swiss-Prot
	ENSMUST00000106479	ENTREZGENE
	ENSMUST00000106479.8	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.420	UniProtKB/Swiss-Prot
	2.120.10.80	UniProtKB/Swiss-Prot
	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
InterPro	BACK	UniProtKB/Swiss-Prot
	BTB-kelch_protein	UniProtKB/Swiss-Prot
	BTB/POZ_dom	UniProtKB/Swiss-Prot
	IPP	UniProtKB/Swiss-Prot
	IPP_BACK	UniProtKB/Swiss-Prot
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot
	Kelch_1	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:16351	UniProtKB/Swiss-Prot
MGD	MGI:96581	ENTREZGENE
NCBI Gene	16351	ENTREZGENE
PANTHER	KELCH PROTEIN	UniProtKB/Swiss-Prot
	KELCH-LIKE PROTEIN 28	UniProtKB/Swiss-Prot
Pfam	BACK	UniProtKB/Swiss-Prot
	BTB	UniProtKB/Swiss-Prot
	Kelch_1	UniProtKB/Swiss-Prot
PhenoGen	Ipp	PhenoGen
PIRSF	Kelch-like_protein_gigaxonin	UniProtKB/Swiss-Prot
PROSITE	BTB	UniProtKB/Swiss-Prot
SMART	BACK	UniProtKB/Swiss-Prot
	BTB	UniProtKB/Swiss-Prot
	Kelch	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF117281	UniProtKB/Swiss-Prot
	SSF54695	UniProtKB/Swiss-Prot
UniProt	IPP_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3V2M0	ENTREZGENE
	Q8BY33_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q3V2M0	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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