Mir30e (microRNA 30e) - Rat Genome Database
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Gene: Mir30e (microRNA 30e) Mus musculus
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Symbol: Mir30e
Name: microRNA 30e
RGD ID: 1608216
MGI Page MGI
Description: Is expressed in liver. Orthologous to human MIR30E (microRNA 30e).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-30e; Mirn; Mirn30e; mmu-mir-3; mmu-mir-30e
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,629,803 - 120,629,894 (-)NCBIGRCm39mm39
GRCm39 Ensembl4120,629,803 - 120,629,894 (-)Ensembl
GRCm384120,772,606 - 120,772,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,772,606 - 120,772,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv374120,445,211 - 120,445,302 (-)NCBIGRCm37mm9NCBIm37
Celera4119,490,804 - 119,490,895 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:12007417   PMID:12919684   PMID:15538371   PMID:16381832   PMID:16766679   PMID:17369397   PMID:17604727   PMID:18452032   PMID:19091803   PMID:19185580   PMID:19188439   PMID:19229884  
PMID:20215419   PMID:20413612   PMID:20548288   PMID:21037258   PMID:21267068   PMID:21822254   PMID:21993888   PMID:22144232   PMID:22512273   PMID:22570807   PMID:22854828   PMID:23515048  
PMID:24113179   PMID:24205035   PMID:25678587   PMID:25858512   PMID:26786283   PMID:27974319   PMID:28338991   PMID:28733476   PMID:29274035   PMID:30816428   PMID:32535037  


Genomics

Comparative Map Data
Mir30e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,629,803 - 120,629,894 (-)NCBIGRCm39mm39
GRCm39 Ensembl4120,629,803 - 120,629,894 (-)Ensembl
GRCm384120,772,606 - 120,772,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,772,606 - 120,772,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv374120,445,211 - 120,445,302 (-)NCBIGRCm37mm9NCBIm37
Celera4119,490,804 - 119,490,895 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
MIR30E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl140,754,355 - 40,754,446 (+)EnsemblGRCh38hg38GRCh38
GRCh38140,754,355 - 40,754,446 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37141,220,027 - 41,220,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,992,613 - 40,992,704 (+)NCBINCBI36hg18NCBI36
Celera139,502,227 - 39,502,318 (+)NCBI
Cytogenetic Map1p34.2NCBI
HuRef139,338,148 - 39,338,239 (+)NCBIHuRef
CHM1_1141,335,858 - 41,335,949 (+)NCBICHM1_1
Mir30e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25134,352,232 - 134,352,323 (-)NCBI
Rnor_6.0 Ensembl5139,702,872 - 139,702,963 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05139,702,872 - 139,702,963 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05143,497,752 - 143,497,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5132,906,563 - 132,906,654 (-)NCBICelera
Cytogenetic Map5q36NCBI
MIR30E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl152,283,306 - 2,283,369 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1152,283,306 - 2,283,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR30E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6170,429,841 - 170,429,920 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16170,429,841 - 170,429,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26157,476,655 - 157,476,734 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)493118593127118593Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494875058128875257Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined495069342128115487Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498657302128115487Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4101000000125000000Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101717404123233418Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4111000000126000000Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116413782124161387Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117214774120866006Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
12903992Opfaq6_mopen field activity QTL 6 (mouse)4119207798121509300Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Nfkbiammu-miR-30e-3pOncomiRDBexternal_infoNANA22156201
Helzmmu-miR-30e-3pOncomiRDBexternal_infoNANA21963845
Ucp2mmu-miR-30e-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI23515048
Slc35e1mmu-miR-30e-5pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)19536157
Sfmbt1mmu-miR-30e-5pTarbaseexternal_infoSequencingPOSITIVE
Mybmmu-miR-30e-5pOncomiRDBexternal_infoNANA21187425
Ube2immu-miR-30e-5pOncomiRDBexternal_infoNANA20498642
Ube2immu-miR-30e-5pOncomiRDBexternal_infoNANA19223510

Predicted Targets
Summary Value
Count of predictions:23909
Count of gene targets:9113
Count of transcripts:15052
Interacting mature miRNAs:mmu-miR-30e-3p, mmu-miR-30e-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083475
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4120,772,606 - 120,772,697 (-)Ensembl
RefSeq Acc Id: NR_029602
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394120,629,803 - 120,629,894 (-)NCBI
GRCm384120,772,606 - 120,772,697 (-)ENTREZGENE
MGSCv374120,445,211 - 120,445,302 (-)RGD
Celera4119,490,804 - 119,490,895 (-)RGD
cM Map4 ENTREZGENE
Sequence:
Promoters
RGD ID:6884494
Promoter ID:EPDNEW_M5698
Type:single initiation site
Name:Mir30e_1
Description:Mus musculus microRNA 30e , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384120,772,616 - 120,772,676EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619329 AgrOrtholog
Ensembl Genes ENSMUSG00000065409 Ensembl
  ENSMUSG00000119752 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083475 ENTREZGENE
MGD MGI:3619329 ENTREZGENE
miRBase MI0000259 ENTREZGENE
NCBI Gene 723836 ENTREZGENE
PhenoGen Mir30e PhenoGen
RNAcentral URS00001DE669 RNACentral
  URS00004DC6A5 RNACentral
  URS0000759D99 RNACentral