Wnt4 (wingless-type MMTV integration site family, member 4) - Rat Genome Database

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Gene: Wnt4 (wingless-type MMTV integration site family, member 4) Mus musculus
Symbol: Wnt4
Name: wingless-type MMTV integration site family, member 4
RGD ID: 733868
Description: Enables frizzled binding activity and transcription corepressor activity. Involved in several processes, including negative regulation of cellular biosynthetic process; paramesonephric duct development; and positive regulation of cellular component biogenesis. Acts upstream of or within several processes, including Wnt signaling pathway; animal organ development; and negative regulation of signal transduction. Located in cell surface; extracellular matrix; and extracellular space. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Human ortholog(s) of this gene implicated in Mullerian aplasia and hyperandrogenism. Orthologous to human WNT4 (Wnt family member 4); PARTICIPATES IN Wnt signaling, canonical pathway; basal cell carcinoma pathway; Hedgehog signaling pathway; INTERACTS WITH (R)-adrenaline; (S)-nicotine; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC123964; signal molecule; wingless-related MMTV integration site 4; Wnt-; Wnt-4
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm394137,004,946 - 137,026,812 (+)NCBIGRCm39mm39
GRCm39 Ensembl4137,004,800 - 137,027,037 (+)Ensembl
GRCm384137,277,635 - 137,299,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4137,277,489 - 137,299,726 (+)EnsemblGRCm38mm10GRCm38
MGSCv374136,833,550 - 136,852,694 (+)NCBIGRCm37mm9NCBIm37
MGSCv364136,549,711 - 136,568,855 (+)NCBImm8
Celera4135,495,983 - 135,515,320 (+)NCBICelera
Cytogenetic Map4D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(R)-adrenaline  (EXP)
(S)-nicotine  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,3-dinitrobenzene  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2-nitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
beryllium sulfate  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromobenzene  (ISO)
bromochloroacetic acid  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
calciol  (EXP)
chlordecone  (EXP)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP)
cyhalothrin  (ISO)
cypermethrin  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
dieldrin  (ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (EXP,ISO)
genistein  (EXP)
glucose  (ISO)
hydroquinone  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
lead nitrate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lead(II) chloride  (ISO)
Licochalcone B  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
N-Vinyl-2-pyrrolidone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP)
O-methyleugenol  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picene  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
progesterone  (EXP,ISO)
rotenone  (EXP)
SB 431542  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (ISO)
anatomical structure development  (IGI)
branching involved in ureteric bud morphogenesis  (IMP)
branching morphogenesis of an epithelial tube  (IGI)
canonical Wnt signaling pathway  (IBA,IDA,IGI,ISO)
cell differentiation  (IMP)
cell fate commitment  (IBA,IMP)
cell-cell signaling  (TAS)
cellular response to estradiol stimulus  (ISO)
cellular response to hydrostatic pressure  (ISO)
cellular response to starvation  (IEP)
cellular response to transforming growth factor beta stimulus  (ISO)
embryonic epithelial tube formation  (IDA)
epithelial to mesenchymal transition  (ISO)
female gonad development  (IMP)
female sex determination  (ISO,ISS)
gamete generation  (IGI)
hormone metabolic process  (IMP)
immature T cell proliferation in thymus  (IMP)
kidney development  (ISO)
kidney morphogenesis  (IGI)
liver development  (ISO)
male gonad development  (IMP,ISO,ISS)
mammary gland epithelium development  (ISO)
mesenchymal to epithelial transition  (IMP)
mesonephric tubule development  (IGI)
mesonephros development  (IMP)
metanephric mesenchymal cell differentiation  (NAS)
metanephric nephron development  (IMP)
metanephric nephron morphogenesis  (IMP)
metanephric tubule formation  (IMP)
metanephros development  (IMP,TAS)
negative regulation of androgen biosynthetic process  (ISO)
negative regulation of apoptotic signaling pathway  (IGI)
negative regulation of cell differentiation  (IMP)
negative regulation of cell migration  (IGI)
negative regulation of fibroblast growth factor receptor signaling pathway  (IGI)
negative regulation of gene expression  (IMP,ISO)
negative regulation of male gonad development  (ISO)
negative regulation of steroid biosynthetic process  (ISO)
negative regulation of testicular blood vessel morphogenesis  (ISO)
negative regulation of testosterone biosynthetic process  (IMP,ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO,ISS)
negative regulation of wound healing  (IGI)
nephron development  (IMP)
neuron differentiation  (IBA)
non-canonical Wnt signaling pathway  (IDA)
non-canonical Wnt signaling pathway via MAPK cascade  (ISO)
oocyte development  (IGI,IMP)
paramesonephric duct development  (IMP,ISO)
positive regulation of aldosterone biosynthetic process  (ISO)
positive regulation of bone mineralization  (ISO)
positive regulation of collagen biosynthetic process  (ISO)
positive regulation of cortisol biosynthetic process  (ISO)
positive regulation of dermatome development  (ISO,ISS)
positive regulation of focal adhesion assembly  (IGI)
positive regulation of GTPase activity  (IGI)
positive regulation of meiotic nuclear division  (IGI)
positive regulation of osteoblast differentiation  (ISO)
positive regulation of stress fiber assembly  (IGI)
positive regulation of transcription, DNA-templated  (IDA,IMP,ISO)
regulation of cell-cell adhesion  (IMP)
renal vesicle formation  (IMP)
renal vesicle induction  (IDA)
response to estradiol  (ISO)
sex differentiation  (IMP)
signal transduction  (TAS)
smooth muscle cell differentiation  (IDA,IMP)
somatotropin secreting cell differentiation  (IMP)
T cell differentiation in thymus  (IDA)
tertiary branching involved in mammary gland duct morphogenesis  (IMP)
thyroid-stimulating hormone-secreting cell differentiation  (IMP)
tube morphogenesis  (IMP)
Wnt signaling pathway  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adenohypophysis morphology  (IAGP)
abnormal adrenal gland physiology  (IAGP)
abnormal female germ cell morphology  (IAGP)
abnormal kidney development  (IAGP)
abnormal kidney mesenchyme morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal loop of Henle morphology  (IAGP)
abnormal metanephric mesenchyme morphology  (IAGP)
abnormal metanephros morphology  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal nephrogenic mesenchyme morphogenesis  (IAGP)
abnormal oogenesis  (IAGP)
abnormal ovary development  (IAGP)
abnormal ovary morphology  (IAGP)
abnormal podocyte morphology  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal reproductive system development  (IAGP)
abnormal secondary sex determination  (IAGP)
absent kidney  (IAGP)
absent Mullerian ducts  (IAGP)
absent ovary capsule  (IAGP)
decreased areal bone mineral density  (IAGP)
decreased bone mineral density of femur  (IAGP)
decreased bone trabecula number  (IAGP)
decreased compact bone area  (IAGP)
decreased gonadotroph cell number  (IAGP)
decreased litter size  (IAGP)
decreased mature ovarian follicle number  (IAGP)
decreased motor neuron number  (IAGP)
decreased oocyte number  (IAGP)
decreased ovary weight  (IAGP)
decreased renal glomerulus number  (IAGP)
decreased somatotroph cell number  (IAGP)
decreased thymocyte number  (IAGP)
decreased thyrotroph cell number  (IAGP)
decreased trabecular bone mass  (IAGP)
delayed kidney development  (IAGP)
disheveled coat  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
hydronephrosis  (IAGP)
kidney failure  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
oocyte degeneration  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
primary sex reversal  (IAGP)
renal glomerulus cysts  (IAGP)
secondary sex reversal  (IAGP)
small kidney  (IAGP)
small metanephros  (IAGP)

Additional References at PubMed
PMID:1373817   PMID:1846319   PMID:2279700   PMID:7590254   PMID:7590255   PMID:7649383   PMID:7990960   PMID:8058323   PMID:8167409   PMID:8275860   PMID:8575294   PMID:8666231  
PMID:8951078   PMID:9165114   PMID:9271117   PMID:9356179   PMID:9435283   PMID:9620855   PMID:9671592   PMID:9716459   PMID:9853965   PMID:9858722   PMID:9889131   PMID:9891778  
PMID:9989404   PMID:10349636   PMID:10415363   PMID:10572052   PMID:10585256   PMID:10654605   PMID:10704890   PMID:10733525   PMID:11042159   PMID:11076861   PMID:11114168   PMID:11171333  
PMID:11265645   PMID:11283799   PMID:11429295   PMID:11507767   PMID:11520664   PMID:11688560   PMID:11832423   PMID:11861511   PMID:11914369   PMID:11920562   PMID:11948913   PMID:11956231  
PMID:12223418   PMID:12379851   PMID:12399432   PMID:12421715   PMID:12466851   PMID:12475749   PMID:12477932   PMID:12482961   PMID:12554773   PMID:12617826   PMID:12619136   PMID:12702652  
PMID:12732619   PMID:12799076   PMID:12815618   PMID:12835383   PMID:12949260   PMID:14628042   PMID:14628051   PMID:14671310   PMID:14681479   PMID:14695376   PMID:15044261   PMID:15149334  
PMID:15162500   PMID:15201225   PMID:15226823   PMID:15265686   PMID:15289436   PMID:15312687   PMID:15326356   PMID:15342465   PMID:15371327   PMID:15581876   PMID:15634693   PMID:15778975  
PMID:15790596   PMID:15880404   PMID:15930111   PMID:15932923   PMID:15944199   PMID:15950605   PMID:15964998   PMID:16049111   PMID:16049112   PMID:16054034   PMID:16140269   PMID:16141072  
PMID:16141073   PMID:16186384   PMID:16207837   PMID:16368682   PMID:16378759   PMID:16423875   PMID:16426441   PMID:16439479   PMID:16452457   PMID:16469829   PMID:16546160   PMID:16675530  
PMID:16678101   PMID:16700629   PMID:16818445   PMID:16844427   PMID:17036046   PMID:17041600   PMID:17050676   PMID:17055474   PMID:17064353   PMID:17172448   PMID:17314325   PMID:17452023  
PMID:17494089   PMID:17505543   PMID:17537789   PMID:17690294   PMID:17711857   PMID:17720811   PMID:17728319   PMID:17804636   PMID:17826763   PMID:17940049   PMID:17943183   PMID:17951031  
PMID:17976036   PMID:17976063   PMID:18155190   PMID:18250097   PMID:18250098   PMID:18287559   PMID:18344980   PMID:18346943   PMID:18351662   PMID:18351675   PMID:18364260   PMID:18391535  
PMID:18395837   PMID:18403409   PMID:18436715   PMID:18617424   PMID:18617533   PMID:18618131   PMID:18635608   PMID:18682239   PMID:18697834   PMID:18708054   PMID:18729207   PMID:18775421  
PMID:18800919   PMID:18927154   PMID:18981061   PMID:18991257   PMID:19036799   PMID:19060336   PMID:19093031   PMID:19124014   PMID:19129494   PMID:19164599   PMID:19165927   PMID:19185060  
PMID:19268447   PMID:19282366   PMID:19285468   PMID:19301398   PMID:19334288   PMID:19363157   PMID:19369396   PMID:19400999   PMID:19460349   PMID:19501082   PMID:19515997   PMID:19538736  
PMID:19562671   PMID:19591821   PMID:19598129   PMID:19715689   PMID:19740593   PMID:19753101   PMID:19757380   PMID:19806668   PMID:19809516   PMID:19820125   PMID:19830824   PMID:19842175  
PMID:19884258   PMID:19906864   PMID:19961844   PMID:19962424   PMID:20003319   PMID:20005806   PMID:20040496   PMID:20040500   PMID:20106871   PMID:20299358   PMID:20359476   PMID:20371632  
PMID:20454446   PMID:20458143   PMID:20823064   PMID:20843830   PMID:20940229   PMID:20944551   PMID:21041481   PMID:21084449   PMID:21163860   PMID:21185284   PMID:21193738   PMID:21248078  
PMID:21248711   PMID:21255566   PMID:21262216   PMID:21267068   PMID:21293032   PMID:21295565   PMID:21343368   PMID:21350016   PMID:21354128   PMID:21386911   PMID:21430080   PMID:21453014  
PMID:21486947   PMID:21490063   PMID:21491542   PMID:21531785   PMID:21533152   PMID:21541287   PMID:21559298   PMID:21574244   PMID:21592645   PMID:21613322   PMID:21623369   PMID:21654186  
PMID:21731673   PMID:21771967   PMID:21852398   PMID:21863216   PMID:21873635   PMID:21884692   PMID:21926402   PMID:21936019   PMID:21937690   PMID:21963425   PMID:22110055   PMID:22114204  
PMID:22114682   PMID:22166339   PMID:22173065   PMID:22234613   PMID:22253774   PMID:22253844   PMID:22432025   PMID:22465478   PMID:22467513   PMID:22496664   PMID:22510988   PMID:22511595  
PMID:22607657   PMID:22705479   PMID:22835934   PMID:22844512   PMID:22866057   PMID:22902740   PMID:22912798   PMID:22954793   PMID:22956684   PMID:22972715   PMID:22998873   PMID:23027131  
PMID:23071697   PMID:23091613   PMID:23095882   PMID:23102580   PMID:23102581   PMID:23190887   PMID:23201013   PMID:23213461   PMID:23260145   PMID:23274689   PMID:23300479   PMID:23313125  
PMID:23362348   PMID:23364326   PMID:23386589   PMID:23475960   PMID:23555292   PMID:23560082   PMID:23583383   PMID:23613466   PMID:23676498   PMID:23685333   PMID:23704941   PMID:23762375  
PMID:23766539   PMID:23824573   PMID:23827310   PMID:23840809   PMID:23843232   PMID:23884445   PMID:23974041   PMID:23987514   PMID:24036309   PMID:24371124   PMID:24394376   PMID:24440154  
PMID:24443808   PMID:24452333   PMID:24550112   PMID:24586192   PMID:24598167   PMID:24681597   PMID:24727668   PMID:24744442   PMID:24768153   PMID:24852369   PMID:24899573   PMID:24904088  
PMID:24952961   PMID:24956260   PMID:24997521   PMID:25012664   PMID:25053437   PMID:25108526   PMID:25158167   PMID:25168025   PMID:25172430   PMID:25187620   PMID:25224227   PMID:25428587  
PMID:25452386   PMID:25458011   PMID:25603931   PMID:25645944   PMID:25687138   PMID:25725066   PMID:25758227   PMID:25803581   PMID:25804736   PMID:25805134   PMID:25926361   PMID:26035382  
PMID:26047795   PMID:26093309   PMID:26116176   PMID:26288816   PMID:26321050   PMID:26362256   PMID:26397044   PMID:26450967   PMID:26484393   PMID:26512061   PMID:26536904   PMID:26658320  
PMID:26700598   PMID:26721931   PMID:26794322   PMID:26939755   PMID:27013242   PMID:27199373   PMID:27313319   PMID:27362799   PMID:27382987   PMID:27414999   PMID:27504979   PMID:27582005  
PMID:27600466   PMID:27624192   PMID:28045957   PMID:28049832   PMID:28118982   PMID:28334964   PMID:28348167   PMID:28575050   PMID:28637242   PMID:28637295   PMID:28659595   PMID:28760814  
PMID:28800889   PMID:28807898   PMID:28813421   PMID:28834739   PMID:28860115   PMID:28900034   PMID:28938467   PMID:28973166   PMID:29031500   PMID:29056552   PMID:29113990   PMID:29211850  
PMID:29335243   PMID:29357412   PMID:29377931   PMID:29432158   PMID:29449451   PMID:29712641   PMID:29735715   PMID:29879378   PMID:29945868   PMID:30010727   PMID:30067986   PMID:30220568  
PMID:30285093   PMID:30347193   PMID:30352686   PMID:30377232   PMID:30552336   PMID:30676318   PMID:30853690   PMID:30940800   PMID:31104943   PMID:31142573   PMID:31167144   PMID:31175162  
PMID:31216173   PMID:31226309   PMID:31495781   PMID:31548351   PMID:31604927   PMID:31647919   PMID:31685872   PMID:31712577   PMID:31772170   PMID:31910233   PMID:31923383   PMID:31953387  
PMID:32001436   PMID:32141129   PMID:32218432   PMID:32253237   PMID:32324134   PMID:32365547   PMID:32452519   PMID:32493750   PMID:32497039   PMID:32541007   PMID:32554463   PMID:32586976  
PMID:32634398   PMID:32715478   PMID:32855415   PMID:32855417   PMID:32907846   PMID:33103447   PMID:33141892   PMID:33328171   PMID:33441379   PMID:33500353   PMID:33730615   PMID:33846290  
PMID:34032268   PMID:34128985  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm394137,004,946 - 137,026,812 (+)NCBIGRCm39mm39
GRCm39 Ensembl4137,004,800 - 137,027,037 (+)Ensembl
GRCm384137,277,635 - 137,299,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4137,277,489 - 137,299,726 (+)EnsemblGRCm38mm10GRCm38
MGSCv374136,833,550 - 136,852,694 (+)NCBIGRCm37mm9NCBIm37
MGSCv364136,549,711 - 136,568,855 (+)NCBImm8
Celera4135,495,983 - 135,515,320 (+)NCBICelera
Cytogenetic Map4D3NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl122,117,313 - 22,143,969 (-)EnsemblGRCh38hg38GRCh38
GRCh38122,117,308 - 22,143,981 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37122,443,806 - 22,469,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,316,385 - 22,342,106 (-)NCBINCBI36hg18NCBI36
Build 34122,191,504 - 22,214,916NCBI
Celera120,766,732 - 20,792,452 (-)NCBI
Cytogenetic Map1p36.12NCBI
HuRef120,687,456 - 20,707,677 (-)NCBIHuRef
CHM1_1122,556,295 - 22,576,527 (-)NCBICHM1_1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.25149,513,573 - 149,535,415 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5149,514,018 - 149,532,859 (+)Ensembl
Rnor_6.05155,649,238 - 155,668,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5155,649,217 - 155,672,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05159,405,855 - 159,424,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45156,064,371 - 156,083,198 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15156,074,409 - 156,093,237 (+)NCBI
Celera5147,911,190 - 147,930,012 (+)NCBICelera
Cytogenetic Map5q36NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_0049554522,319,446 - 2,344,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554522,319,446 - 2,344,740 (-)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.1122,252,344 - 22,264,858 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,255,056 - 22,268,801 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0121,310,228 - 21,335,985 (-)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1277,112,045 - 77,129,702 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl277,101,300 - 77,127,111 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,605,854 - 73,632,899 (+)NCBI
ROS_Cfam_1.0277,660,017 - 77,687,063 (+)NCBI
UMICH_Zoey_3.1274,480,520 - 74,507,565 (+)NCBI
UNSW_CanFamBas_1.0275,489,331 - 75,516,389 (+)NCBI
UU_Cfam_GSD_1.0276,493,182 - 76,520,234 (+)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_02440505841,798,680 - 41,823,413 (-)NCBI
SpeTri2.0NW_0049364747,623,462 - 7,635,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1680,110,238 - 80,138,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2674,137,827 - 74,165,540 (-)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.120110,517,391 - 110,543,802 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20110,517,564 - 110,541,203 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660335,754,333 - 5,781,060 (-)NCBIVero_WHO_p1.0
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_0046247646,913,027 - 6,934,650 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv374136,851,439 - 136,851,709UniSTSGRCm37
MGSCv374136,851,442 - 136,851,605UniSTSGRCm37
Celera4135,514,068 - 135,514,231UniSTS
Celera4135,514,065 - 135,514,335UniSTS
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384137,295,527 - 137,295,690UniSTSGRCm38
MGSCv374136,851,442 - 136,851,605UniSTSGRCm37
Celera4135,514,068 - 135,514,231UniSTS
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384137,295,524 - 137,295,794UniSTSGRCm38
MGSCv374136,851,439 - 136,851,709UniSTSGRCm37
Celera4135,514,065 - 135,514,335UniSTS
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4124100000144600000Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124161300141845481Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124161300142711450Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124371164142504390Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124371164150592401Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129572018151570093Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131923413141151964Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4132926037156508116Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133427367137890684Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133427367150704994Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133592276156508116Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134569994156508116Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134569994156508116Mouse
4141779Ssrq8_mstress response QTL 8 (mouse)Not determined137148689137890684Mouse
12050091Shm2_msperm head morphology 2 (mouse)4137148689138615442Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1311
Count of miRNA genes:603
Interacting mature miRNAs:758
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.



Reference Sequences
RefSeq Acc Id: ENSMUST00000045747   ⟹   ENSMUSP00000036580
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,004,800 - 137,027,037 (+)Ensembl
GRCm38.p6 Ensembl4137,277,489 - 137,299,726 (+)Ensembl
RefSeq Acc Id: NM_009523   ⟹   NP_033549
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm394137,004,946 - 137,026,812 (+)NCBI
GRCm384137,277,635 - 137,299,501 (+)ENTREZGENE
MGSCv374136,833,550 - 136,852,694 (+)RGD
Celera4135,495,983 - 135,518,012 (+)ENTREZGENE
Reference Sequences
RefSeq Acc Id: NP_033549   ⟸   NM_009523
- Peptide Label: precursor
- UniProtKB: P22724 (UniProtKB/Swiss-Prot),   Q3ZB23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000036580   ⟸   ENSMUST00000045747

RGD ID:6836668
Promoter ID:MM_KWN:40243
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day1
Mouse AssemblyChrPosition (strand)Source
MGSCv364136,833,266 - 136,833,766 (+)MPROMDB
RGD ID:6885142
Promoter ID:EPDNEW_M6022
Type:multiple initiation site
Description:Mus musculus wingless-type MMTV integration site family, member4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm384137,277,589 - 137,277,649EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98957 AgrOrtholog
Ensembl Genes ENSMUSG00000036856 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000036580 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045747 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2460.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Wnt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PANTHER PTHR12027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam wnt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wnt4 PhenoGen
  WNTPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WNT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WNT4_MOUSE UniProtKB/Swiss-Prot

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 Wnt4  wingless-type MMTV integration site family, member 4    wingless-related MMTV integration site 4  Symbol and/or name change 5135510 APPROVED