Urod (uroporphyrinogen decarboxylase) - Rat Genome Database

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Gene: Urod (uroporphyrinogen decarboxylase) Mus musculus
Analyze
Symbol: Urod
Name: uroporphyrinogen decarboxylase
RGD ID: 735366
MGI Page MGI
Description: Enables uroporphyrinogen decarboxylase activity. Acts upstream of or within heme biosynthetic process. Located in cytosol. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in porphyria cutanea tarda. Orthologous to human UROD (uroporphyrinogen decarboxylase).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AI323803; UPD; Uro; Uro-d
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,847,162 - 116,851,634 (-)NCBIGRCm39mm39
GRCm39 Ensembl4116,847,162 - 116,851,610 (-)Ensembl
GRCm384116,989,965 - 116,994,436 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,989,965 - 116,994,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv374116,662,822 - 116,666,980 (-)NCBIGRCm37mm9NCBIm37
MGSCv364116,488,150 - 116,492,292 (-)NCBImm8
Celera4115,725,715 - 115,729,873 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,IDA,ISO)
nucleoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1684952   PMID:8661721   PMID:10349636   PMID:10501973   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11134514   PMID:11835626   PMID:12297827   PMID:12477932   PMID:14610273  
PMID:14681479   PMID:15489334   PMID:15782199   PMID:15923635   PMID:16141072   PMID:16141073   PMID:17360334   PMID:19656451   PMID:20099833   PMID:20508144   PMID:21267068   PMID:21873635  
PMID:21880518   PMID:26287972   PMID:32325033  


Genomics

Comparative Map Data
Urod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,847,162 - 116,851,634 (-)NCBIGRCm39mm39
GRCm39 Ensembl4116,847,162 - 116,851,610 (-)Ensembl
GRCm384116,989,965 - 116,994,436 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,989,965 - 116,994,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv374116,662,822 - 116,666,980 (-)NCBIGRCm37mm9NCBIm37
MGSCv364116,488,150 - 116,492,292 (-)NCBImm8
Celera4115,725,715 - 115,729,873 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.41NCBI
UROD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl145,010,950 - 45,015,575 (+)EnsemblGRCh38hg38GRCh38
GRCh38145,012,254 - 45,015,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37145,477,926 - 45,481,247 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,250,417 - 45,253,928 (+)NCBINCBI36hg18NCBI36
Build 34145,147,012 - 45,150,434NCBI
Celera143,760,589 - 43,764,125 (+)NCBI
Cytogenetic Map1p34.1NCBI
HuRef143,589,865 - 43,593,401 (+)NCBIHuRef
CHM1_1145,594,383 - 45,597,919 (+)NCBICHM1_1
Urod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25130,464,695 - 130,468,783 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5130,455,217 - 130,468,808 (-)Ensembl
Rnor_6.05135,855,429 - 135,859,515 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5135,855,433 - 135,859,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05139,650,563 - 139,654,649 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,296,410 - 137,300,496 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15137,301,638 - 137,305,678 (-)NCBI
Celera5128,991,227 - 128,995,309 (-)NCBICelera
Cytogenetic Map5q36NCBI
Urod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546413,221,551 - 13,229,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546413,226,271 - 13,228,908 (-)NCBIChiLan1.0ChiLan1.0
UROD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1145,679,744 - 45,683,185 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl145,679,744 - 45,683,185 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0144,315,912 - 44,319,356 (+)NCBIMhudiblu_PPA_v0panPan3
UROD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,313,808 - 15,317,130 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,312,674 - 15,320,010 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,434,370 - 15,437,815 (-)NCBI
ROS_Cfam_1.01515,468,964 - 15,472,409 (-)NCBI
ROS_Cfam_1.0 Ensembl1515,468,979 - 15,472,392 (-)Ensembl
UMICH_Zoey_3.11515,265,932 - 15,269,377 (-)NCBI
UNSW_CanFamBas_1.01515,333,857 - 15,337,302 (-)NCBI
UU_Cfam_GSD_1.01515,406,026 - 15,409,471 (-)NCBI
Urod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505860,382,374 - 60,385,817 (+)NCBI
SpeTri2.0NW_00493647426,207,169 - 26,210,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UROD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6166,327,247 - 166,330,614 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16166,327,243 - 166,330,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26153,911,652 - 153,914,966 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UROD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12087,772,685 - 87,776,110 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2087,772,261 - 87,775,978 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603329,169,582 - 29,173,007 (+)NCBIVero_WHO_p1.0
Urod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624906910,306 - 914,898 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI323803  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,990,246 - 116,990,359UniSTSGRCm38
MGSCv374116,662,851 - 116,662,964UniSTSGRCm37
Celera4115,725,744 - 115,725,857UniSTS
Cytogenetic Map4D1UniSTS
cM Map450.6UniSTS
Whitehead/MRC_RH41555.33UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117215009Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465400000119000000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483747673117747809Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485571641119571840Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485571641119571840Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485923970119924082Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485923970119924082Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488200000118700000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)490000000119000000Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)493118593127118593Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494875058128875257Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined495069342128115487Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498657302128115487Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4101000000125000000Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101717404123233418Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4111000000126000000Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116413782124161387Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir122mmu-miR-122-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)21364282

Predicted Target Of
Summary Value
Count of predictions:1939
Count of miRNA genes:714
Interacting mature miRNAs:891
Transcripts:ENSMUST00000030446, ENSMUST00000123079, ENSMUST00000127635, ENSMUST00000130273, ENSMUST00000134598, ENSMUST00000135164, ENSMUST00000139209, ENSMUST00000139816, ENSMUST00000150370, ENSMUST00000153629
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK002844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY266170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030446   ⟹   ENSMUSP00000030446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,847,162 - 116,851,610 (-)Ensembl
GRCm38.p6 Ensembl4116,989,965 - 116,994,413 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,849,481 - 116,851,543 (-)Ensembl
GRCm38.p6 Ensembl4116,992,284 - 116,994,346 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127635
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,849,981 - 116,851,542 (-)Ensembl
GRCm38.p6 Ensembl4116,992,784 - 116,994,345 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130273   ⟹   ENSMUSP00000116154
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,848,658 - 116,851,554 (-)Ensembl
GRCm38.p6 Ensembl4116,991,461 - 116,994,357 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134598
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,847,414 - 116,848,862 (-)Ensembl
GRCm38.p6 Ensembl4116,990,217 - 116,991,665 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,848,273 - 116,851,561 (-)Ensembl
GRCm38.p6 Ensembl4116,991,076 - 116,994,364 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139209
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,850,305 - 116,851,537 (-)Ensembl
GRCm38.p6 Ensembl4116,993,108 - 116,994,340 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139816
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,850,477 - 116,851,577 (-)Ensembl
GRCm38.p6 Ensembl4116,993,280 - 116,994,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150370
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,847,482 - 116,849,083 (-)Ensembl
GRCm38.p6 Ensembl4116,990,285 - 116,991,886 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4116,850,150 - 116,850,794 (-)Ensembl
GRCm38.p6 Ensembl4116,992,953 - 116,993,597 (-)Ensembl
RefSeq Acc Id: NM_009478   ⟹   NP_033504
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,847,162 - 116,851,610 (-)NCBI
GRCm384116,989,965 - 116,994,413 (-)NCBI
MGSCv374116,662,822 - 116,666,980 (-)RGD
Celera4115,725,715 - 115,729,873 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502931   ⟹   XP_006502994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,847,409 - 116,851,633 (-)NCBI
GRCm384116,990,212 - 116,994,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502932   ⟹   XP_006502995
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,847,409 - 116,851,633 (-)NCBI
GRCm384116,990,212 - 116,994,436 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163978   ⟹   XP_036019871
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,847,409 - 116,851,634 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033504   ⟸   NM_009478
- UniProtKB: P70697 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502994   ⟸   XM_006502931
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006502995   ⟸   XM_006502932
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000116154   ⟸   ENSMUST00000130273
RefSeq Acc Id: ENSMUSP00000030446   ⟸   ENSMUST00000030446
RefSeq Acc Id: XP_036019871   ⟸   XM_036163978
- Peptide Label: isoform X3
Protein Domains
Uroporphyrinogen_deCOase

Promoters
RGD ID:6836630
Promoter ID:MM_KWN:39200
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000022657,   OTTMUST00000022658
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364116,663,964 - 116,664,464 (-)MPROMDB
RGD ID:6836632
Promoter ID:MM_KWN:39201
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000062750,   UC008UHS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364116,666,629 - 116,667,129 (-)MPROMDB
RGD ID:6836631
Promoter ID:MM_KWN:39202
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   Brain
Transcripts:OTTMUST00000022649,   OTTMUST00000022650,   OTTMUST00000022652,   OTTMUST00000022654,   OTTMUST00000022655,   OTTMUST00000022656,   OTTMUST00000062751
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364116,666,719 - 116,667,219 (-)MPROMDB
RGD ID:6884342
Promoter ID:EPDNEW_M5622
Type:multiple initiation site
Name:Urod_1
Description:Mus musculus uroporphyrinogen decarboxylase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,994,364 - 116,994,424EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98916 AgrOrtholog
Ensembl Genes ENSMUSG00000028684 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030446 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116154 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030446 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130273 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro UROD/MetE-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Uroporphyrinogen_deCO2ase_HemE UniProtKB/Swiss-Prot
  Uroporphyrinogen_deCOase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22275 UniProtKB/Swiss-Prot
MGD MGI:98916 ENTREZGENE
NCBI Gene 22275 ENTREZGENE
Pfam URO-D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Urod PhenoGen
PROSITE UROD_1 UniProtKB/Swiss-Prot
  UROD_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs hemE UniProtKB/Swiss-Prot
UniProt A0A0A0MQG7_MOUSE UniProtKB/TrEMBL
  DCUP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q91VW4 UniProtKB/Swiss-Prot