Podn (podocan) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Podn (podocan) Mus musculus
Analyze
Symbol: Podn
Name: podocan
RGD ID: 1320635
MGI Page MGI
Description: Predicted to enable collagen binding activity. Predicted to be involved in negative regulation of cell migration and negative regulation of cell population proliferation. Predicted to be located in cytoplasm. Predicted to be active in extracellular space. Is expressed in several structures, including alimentary system; brain; limb; skeleton; and urinary system. Orthologous to human PODN (podocan).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9430070G18; Pcan; S; SLRR5A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,871,990 - 107,889,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4107,871,988 - 107,889,534 (-)EnsemblGRCm39 Ensembl
GRCm384108,014,793 - 108,031,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,014,791 - 108,096,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv374107,687,398 - 107,704,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,512,725 - 107,530,022 (-)NCBIMGSCv36mm8
Celera4106,364,360 - 106,381,648 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
extracellular space  (IBA,IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12796502   PMID:15063725   PMID:15489334   PMID:16141072   PMID:16141073   PMID:20562862   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:24043300   PMID:24194600   PMID:27626380   PMID:38355793   PMID:38430223  


Genomics

Comparative Map Data
Podn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,871,990 - 107,889,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4107,871,988 - 107,889,534 (-)EnsemblGRCm39 Ensembl
GRCm384108,014,793 - 108,031,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,014,791 - 108,096,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv374107,687,398 - 107,704,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,512,725 - 107,530,022 (-)NCBIMGSCv36mm8
Celera4106,364,360 - 106,381,648 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
PODN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38153,062,213 - 53,085,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl153,062,052 - 53,085,501 (+)EnsemblGRCh38hg38GRCh38
GRCh37153,527,885 - 53,551,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36153,300,473 - 53,323,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34153,239,905 - 53,263,194NCBI
Celera151,815,859 - 51,839,146 (+)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,643,206 - 51,666,654 (+)NCBIHuRef
CHM1_1153,644,881 - 53,668,328 (+)NCBICHM1_1
T2T-CHM13v2.0152,943,715 - 52,966,996 (+)NCBIT2T-CHM13v2.0
Podn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,003,907 - 128,025,518 (-)NCBIGRCr8
mRatBN7.25122,774,536 - 122,796,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5122,776,549 - 122,881,287 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05127,617,482 - 127,637,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05131,465,155 - 131,480,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5121,519,636 - 121,539,989 (-)NCBICelera
Cytogenetic Map5q34NCBI
Podn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,070,415 - 6,084,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,070,842 - 6,084,463 (-)NCBIChiLan1.0ChiLan1.0
PODN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21173,752,617 - 173,782,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,893,374 - 172,916,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0152,334,363 - 52,358,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1153,936,781 - 53,958,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,940,073 - 53,955,393 (+)Ensemblpanpan1.1panPan2
PODN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1555,831,798 - 55,850,247 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl555,830,993 - 55,843,057 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,873,923 - 55,916,192 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0555,997,302 - 56,039,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,016,258 - 56,039,676 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1555,989,427 - 56,031,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0555,880,853 - 55,923,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,270,094 - 56,312,371 (-)NCBIUU_Cfam_GSD_1.0
Podn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505867,420,479 - 67,462,865 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365227,973,687 - 7,995,301 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365227,954,541 - 7,995,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PODN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,159,134 - 159,297,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,155,251 - 159,179,456 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,867,391 - 146,891,454 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PODN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12079,834,491 - 79,858,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2079,834,497 - 79,858,087 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603337,422,848 - 37,446,478 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Podn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462485973,053 - 97,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462485976,683 - 97,945 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1942
Count of miRNA genes:615
Interacting mature miRNAs:735
Transcripts:ENSMUST00000044248, ENSMUST00000106708, ENSMUST00000106709, ENSMUST00000124265, ENSMUST00000130026, ENSMUST00000145491, ENSMUST00000146851, ENSMUST00000147597
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696687Gdq1_mgrooming duration QTL 1, males (mouse)496888237111857197Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse

Markers in Region
RH138605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384108,014,793 - 108,014,931UniSTSGRCm38
MGSCv374107,687,398 - 107,687,536UniSTSGRCm37
Celera4106,364,360 - 106,364,498UniSTS
Cytogenetic Map4C7UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000044248   ⟹   ENSMUSP00000048962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,871,994 - 107,953,642 (-)Ensembl
GRCm38.p6 Ensembl4108,014,797 - 108,096,445 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106708   ⟹   ENSMUSP00000102319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,872,048 - 107,889,150 (-)Ensembl
GRCm38.p6 Ensembl4108,014,851 - 108,031,953 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106709   ⟹   ENSMUSP00000102320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,871,988 - 107,889,287 (-)Ensembl
GRCm38.p6 Ensembl4108,014,791 - 108,032,090 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,884,390 - 107,889,534 (-)Ensembl
GRCm38.p6 Ensembl4108,027,193 - 108,032,337 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130026   ⟹   ENSMUSP00000123184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,874,920 - 107,878,723 (-)Ensembl
GRCm38.p6 Ensembl4108,017,723 - 108,021,526 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,872,051 - 107,889,151 (-)Ensembl
GRCm38.p6 Ensembl4108,014,854 - 108,031,954 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146851   ⟹   ENSMUSP00000121478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,871,990 - 107,881,512 (-)Ensembl
GRCm38.p6 Ensembl4108,014,793 - 108,024,315 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4107,884,218 - 107,888,183 (-)Ensembl
GRCm38.p6 Ensembl4108,027,021 - 108,030,986 (-)Ensembl
RefSeq Acc Id: NM_001285956   ⟹   NP_001272885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,888,183 (-)NCBI
GRCm384108,014,793 - 108,030,986 (-)NCBI
Celera4106,364,360 - 106,381,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285958   ⟹   NP_001272887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,889,151 (-)NCBI
GRCm384108,014,793 - 108,031,954 (-)NCBI
Celera4106,364,360 - 106,381,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001425123   ⟹   NP_001412052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,884,538 (-)NCBI
RefSeq Acc Id: NM_001425124   ⟹   NP_001412053
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,889,544 (-)NCBI
RefSeq Acc Id: NM_172874   ⟹   NP_766462
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,889,151 (-)NCBI
GRCm384108,014,793 - 108,031,954 (-)NCBI
MGSCv374107,687,398 - 107,704,695 (-)RGD
Celera4106,364,360 - 106,381,648 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240532   ⟹   XP_011238834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,882,800 (-)NCBI
GRCm384108,014,793 - 108,025,603 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253568   ⟹   XP_030109428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394107,871,990 - 107,884,257 (-)NCBI
GRCm384108,014,793 - 108,027,060 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766462   ⟸   NM_172874
- Peptide Label: precursor
- UniProtKB: A2A8F3 (UniProtKB/Swiss-Prot),   Q8BM45 (UniProtKB/Swiss-Prot),   Q7TQ62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272887   ⟸   NM_001285958
- Peptide Label: precursor
- UniProtKB: A2A8F3 (UniProtKB/Swiss-Prot),   Q8BM45 (UniProtKB/Swiss-Prot),   Q7TQ62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272885   ⟸   NM_001285956
- Peptide Label: precursor
- UniProtKB: A2A8F3 (UniProtKB/Swiss-Prot),   Q8BM45 (UniProtKB/Swiss-Prot),   Q7TQ62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238834   ⟸   XM_011240532
- Peptide Label: isoform X2
- UniProtKB: Q7TQ62 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109428   ⟸   XM_030253568
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000123184   ⟸   ENSMUST00000130026
Ensembl Acc Id: ENSMUSP00000121478   ⟸   ENSMUST00000146851
Ensembl Acc Id: ENSMUSP00000102319   ⟸   ENSMUST00000106708
Ensembl Acc Id: ENSMUSP00000102320   ⟸   ENSMUST00000106709
Ensembl Acc Id: ENSMUSP00000048962   ⟸   ENSMUST00000044248
RefSeq Acc Id: NP_001412053   ⟸   NM_001425124
- Peptide Label: precursor
- UniProtKB: Q8BM45 (UniProtKB/Swiss-Prot),   Q7TQ62 (UniProtKB/Swiss-Prot),   A2A8F3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001412052   ⟸   NM_001425123
- Peptide Label: precursor
- UniProtKB: Q8BM45 (UniProtKB/Swiss-Prot),   Q7TQ62 (UniProtKB/Swiss-Prot),   A2A8F3 (UniProtKB/Swiss-Prot)
Protein Domains
LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQ62-F1-model_v2 AlphaFold Q7TQ62 1-611 view protein structure

Promoters
RGD ID:6835885
Promoter ID:MM_KWN:38872
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000021373
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364107,697,174 - 107,697,674 (-)MPROMDB
RGD ID:6835884
Promoter ID:MM_KWN:38874
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000084370,   OTTMUST00000021370,   OTTMUST00000021372,   OTTMUST00000021374,   UC008UAR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364107,704,651 - 107,705,172 (-)MPROMDB
RGD ID:6884112
Promoter ID:EPDNEW_M5507
Type:multiple initiation site
Name:Podn_1
Description:Mus musculus podocan , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384108,031,954 - 108,032,014EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2674939 AgrOrtholog
Ensembl Genes ENSMUSG00000028600 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000106708 ENTREZGENE
  ENSMUST00000106708.8 UniProtKB/Swiss-Prot
  ENSMUST00000106709 ENTREZGENE
  ENSMUST00000106709.9 UniProtKB/Swiss-Prot
  ENSMUST00000130026.2 UniProtKB/TrEMBL
  ENSMUST00000146851.8 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot
  SLRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:242608 UniProtKB/Swiss-Prot
MGD MGI:2674939 ENTREZGENE
NCBI Gene 242608 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LEUCINE RICH REPEAT FAMILY PROTEIN UniProtKB/Swiss-Prot
  PODOCAN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Podn PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A8F3 ENTREZGENE
  F6XS92_MOUSE UniProtKB/TrEMBL
  PODN_MOUSE UniProtKB/Swiss-Prot
  Q6P3D8_MOUSE UniProtKB/TrEMBL
  Q7TQ62 ENTREZGENE
  Q8BM45 ENTREZGENE
UniProt Secondary A2A8F3 UniProtKB/Swiss-Prot
  Q8BM45 UniProtKB/Swiss-Prot