Podn (podocan) - Rat Genome Database

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Gene: Podn (podocan) Chinchilla lanigera
Analyze
Symbol: Podn
Name: podocan
RGD ID: 9011784
Description: ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,070,415 - 6,084,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,070,842 - 6,084,463 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Podn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,070,415 - 6,084,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,070,842 - 6,084,463 (-)NCBIChiLan1.0ChiLan1.0
PODN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38153,062,213 - 53,085,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl153,062,052 - 53,085,501 (+)EnsemblGRCh38hg38GRCh38
GRCh37153,527,885 - 53,551,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36153,300,473 - 53,323,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34153,239,905 - 53,263,194NCBI
Celera151,815,859 - 51,839,146 (+)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,643,206 - 51,666,654 (+)NCBIHuRef
CHM1_1153,644,881 - 53,668,328 (+)NCBICHM1_1
T2T-CHM13v2.0152,943,715 - 52,966,996 (+)NCBIT2T-CHM13v2.0
Podn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,871,990 - 107,889,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4107,871,988 - 107,889,534 (-)EnsemblGRCm39 Ensembl
GRCm384108,014,793 - 108,031,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,014,791 - 108,096,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv374107,687,398 - 107,704,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,512,725 - 107,530,022 (-)NCBIMGSCv36mm8
Celera4106,364,360 - 106,381,648 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
Podn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,003,907 - 128,025,518 (-)NCBIGRCr8
mRatBN7.25122,774,536 - 122,796,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5122,776,549 - 122,881,287 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05127,617,482 - 127,637,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05131,465,155 - 131,480,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5121,519,636 - 121,539,989 (-)NCBICelera
Cytogenetic Map5q34NCBI
PODN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21173,752,617 - 173,782,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,893,374 - 172,916,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0152,334,363 - 52,358,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1153,936,781 - 53,958,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,940,073 - 53,955,393 (+)Ensemblpanpan1.1panPan2
PODN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1555,831,798 - 55,850,247 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl555,830,993 - 55,843,057 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,873,923 - 55,916,192 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0555,997,302 - 56,039,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,016,258 - 56,039,676 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1555,989,427 - 56,031,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0555,880,853 - 55,923,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,270,094 - 56,312,371 (-)NCBIUU_Cfam_GSD_1.0
Podn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505867,420,479 - 67,462,865 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365227,973,687 - 7,995,301 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365227,954,541 - 7,995,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PODN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,159,134 - 159,297,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,155,251 - 159,179,456 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,867,391 - 146,891,454 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PODN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12079,834,491 - 79,858,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2079,834,497 - 79,858,087 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603337,422,848 - 37,446,478 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Podn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462485973,053 - 97,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462485976,683 - 97,945 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012237   ⟹   ENSCLAP00000012096
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554646,070,415 - 6,084,467 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000012238   ⟹   ENSCLAP00000012097
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554646,075,024 - 6,081,966 (-)Ensembl
RefSeq Acc Id: XM_013521746   ⟹   XP_013377200
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554646,070,842 - 6,084,463 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377200 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012096
  ENSCLAP00000012096.1
  ENSCLAP00000012097.1
Reference Protein Sequences
RefSeq Acc Id: XP_013377200   ⟸   XM_013521746
- UniProtKB: A0A8C2YNQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012096   ⟸   ENSCLAT00000012237
RefSeq Acc Id: ENSCLAP00000012097   ⟸   ENSCLAT00000012238
Protein Domains
LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008341 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012237 ENTREZGENE
  ENSCLAT00000012237.1 UniProtKB/TrEMBL
  ENSCLAT00000012238.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Podn ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  LEUCINE RICH REPEAT FAMILY PROTEIN UniProtKB/TrEMBL
  PODOCAN UniProtKB/TrEMBL
Pfam LRR_5 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PRINTS LEURICHRPT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2YNQ2_CHILA UniProtKB/TrEMBL
  A0A8C2YNQ3 ENTREZGENE, UniProtKB/TrEMBL