Podn (podocan) - Rat Genome Database

Name: Podn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Podn (podocan) Ictidomys tridecemlineatus

Analyze

Symbol:

Podn

Name:

podocan

RGD ID:

12589984

Description:

ENCODES a protein that exhibits collagen binding (inferred); INVOLVED IN negative regulation of cell migration (inferred); negative regulation of cell population proliferation (inferred); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

podocan, transcript variant X1; podocan, transcript variant X2; podocan, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PODN (podocan)	NCBI	Ortholog
Mus musculus (house mouse):	Podn (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Podn (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Podn (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PODN (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PODN (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PODN (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PODN (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Podn (podocan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	67,420,479 - 67,462,865 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	7,973,687 - 7,995,301 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	7,954,541 - 7,995,195 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell migration (IEA)

negative regulation of cell population proliferation (IEA)

Cellular Component

cytoplasm (IEA)

extracellular region (IEA)

extracellular space (IEA)

Molecular Function

collagen binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Podn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	67,420,479 - 67,462,865 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	7,973,687 - 7,995,301 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	7,954,541 - 7,995,195 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PODN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	53,062,213 - 53,085,494 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	53,062,052 - 53,085,501 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	53,527,885 - 53,551,166 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	53,300,473 - 53,323,762 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	53,239,905 - 53,263,194	NCBI
Celera	1	51,815,859 - 51,839,146 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	51,643,206 - 51,666,654 (+)	NCBI		HuRef
CHM1_1	1	53,644,881 - 53,668,328 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	52,943,715 - 52,966,996 (+)	NCBI		T2T-CHM13v2.0

Podn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	107,871,990 - 107,889,544 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	107,871,988 - 107,889,534 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	108,014,793 - 108,031,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	108,014,791 - 108,096,445 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	107,687,398 - 107,704,695 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	107,512,725 - 107,530,022 (-)	NCBI		MGSCv36	mm8
Celera	4	106,364,360 - 106,381,648 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.18	NCBI

Podn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	128,003,907 - 128,025,518 (-)	NCBI		GRCr8
mRatBN7.2	5	122,774,536 - 122,796,755 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	122,776,549 - 122,881,287 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	127,617,482 - 127,637,898 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	131,465,155 - 131,480,144 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	121,519,636 - 121,539,989 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

Podn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	6,070,415 - 6,084,467 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	6,070,842 - 6,084,463 (-)	NCBI	ChiLan1.0	ChiLan1.0

PODN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	173,752,617 - 173,782,430 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	172,893,374 - 172,916,722 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	52,334,363 - 52,358,127 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	53,936,781 - 53,958,710 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	53,940,073 - 53,955,393 (+)	Ensembl	panpan1.1		panPan2

PODN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	55,831,798 - 55,850,247 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	55,830,993 - 55,843,057 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	55,873,923 - 55,916,192 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	55,997,302 - 56,039,579 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,016,258 - 56,039,676 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	55,989,427 - 56,031,694 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	55,880,853 - 55,923,132 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,270,094 - 56,312,371 (-)	NCBI		UU_Cfam_GSD_1.0

PODN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	159,159,134 - 159,297,965 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	159,155,251 - 159,179,456 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	146,867,391 - 146,891,454 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PODN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	79,834,491 - 79,858,606 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	79,834,497 - 79,858,087 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	37,422,848 - 37,446,478 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Podn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	73,053 - 97,903 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	76,683 - 97,945 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010436 ⟹ ENSSTOP00000009367

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936522	7,973,687 - 7,995,301 (-)	Ensembl

RefSeq Acc Id:

XM_005326051 ⟹ XP_005326108

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,420,971 - 67,442,239 (+)	NCBI
SpeTri2.0	NW_004936522	7,974,055 - 7,995,195 (-)	NCBI

Sequence:

show sequence

ATGCACGCGGGGTGGGGGCGGGGAGAGGCGGGGAGAAGAAAACTCACAACAAAACTTGCGTCGC
GGCGCGCACGGCTCGACTTGAATGGAAGGAGCCCGCGTCCGCGGAGCGCAGCCGAGACACGGGA
GAGAGTGTTCAGCCGGCGGGACGCGGCACCGCGCGGGGCGCAGCAGGTACCATGGCCCAGAGCA
GGGCACTGCTGCTCCTGCTGCTGTTGCCACCACAGCTACACCTGGGACCTGTGCTCGCAGTGAG
GGCCCCAATGTTTGGCCGAAGCAGCACCCACAGTCTGAGCCCTGAGGAGAATGAATTTGTGGAG
GAGGAGCCTGTGCTGGTCCTAAGCCCCGAGGAGCCAGGGCCTGGCCCAGCTACTGTTGACTGTC
CCCGAGACTGTGCCTGCTCCCAGGAGGGTGTTGTGGACTGTGGTGGCATCGACCTGCGTGAGTT
CCCCGGGGACCTGCCTGAGCACACCAACCATCTGTCCCTGCAGAACAATCAGCTGGAGAAGATC
TATCCTGAGGAGCTTTCTCGGCTCCAGCGGCTGGAGACTCTGAACCTCCAGAACAATCGCCTGA
CTTCCAGAGGGCTCCCGGAGGAGGCATTTGAGCATCTGACCAACCTCAACTACCTGTACCTGGC
CAACAACAAGCTGACATTGGCACCTCGATTCCTGCCAAATGCCCTGATCAGCGTGGACTTTGCT
GCCAACTATCTCACCAAGATCTATGGGCTCACCTTTGGCCAGAAGCCAAATTTGAGGTCTGTGT
ATCTGCACAACAACAAACTAGCAGATGCGGGGCTGCCGGACAGCATGTTCAACGGCTCCAGCAA
TGTTGAGATCCTCATCCTGTCCAGCAACTTCCTGCGCCATGTGCCCAAGCACCTGCCACCTGCC
CTGTACAAGCTGCACCTCAAGAACAACAAGCTGGAAAAGATCCCCCCTGGGGCCTTCAGTGAGC
TGAGCAACCTGCGAGAGCTGTATCTGCAGAACAACTACCTGACTGATGAGGGCCTGGACAACGA
GACCTTCTGGAAGCTCTCCAGCCTAGAGTACCTGGATCTGTCTAGCAACAACTTGACGCGGGTC
CCTGCAGGACTGCCTCGGAGCCTGGTCCTGTTGCACCTGGAGAAGAATGTCATCCGGAGTGTGG
ACGCCGACGTGCTGACCCCCATCCGCAGCCTTGAGTACCTGCTGCTGCACAGCAACCAGCTGCA
GGCAGACGGTATCCACCCGCTGGCGTTCCAGGGCCTCAAGCGGCTGCACACCGTGCACCTGTAT
AACAACGCCCTGGAGCGCGTGCCCAGCGGCCTGCCCCGGCGCGTGCGCACCCTCATGATCCTGC
ACAACCAGATCACGGGCATCGGCCGTGAGGACTTCGCTACCACCTACTTCCTGGAGGAGCTCAA
CCTCAGCTACAACCGCATCACCAGCCCTCAGATACACCGCGATGCCTTCCGCAAGCTGCGCCTC
CTGCGCTCACTTGACCTTTCCGGCAATCGCTTGCACACGCTGCCACCCGGCCTGCCACGCAATG
TGCACGTGCTGAAGGTCAAGCGCAATGAGCTGGCTGCTCTGGCACGCGGGGCGCTGGCAGGCAT
GGCCCAACTGCGGGAGCTCTACCTCACTGGCAACCGACTCCGCAGCCGGGCCCTGGGTCCCCGT
GCTTGGGTGGACCTCGCCCATCTGCAGCTGCTGGACATTGCTGGGAATCAGCTCACGGAGATCC
CCGAGGGGCTTCCCAAGTCTCTCGAGTACCTGTACCTGCAGAACAACAAGATTAGCACCGTGCC
TGCCAATGCCTTCGACTCCACACCCAACCTCAAGGGGATCTTTCTCAGGTTTAACAAGCTGGCC
GTGGGCTCTGTGGTGGAAAGTGCTTTCCGGAGGCTGAAGCACCTACAGGTCTTGGACATCGAAG
GCAACTTTGAGTTTGGTGACGTTTCCAAGAACCGTGGCCACTTAGAGAAGGAAGAAGAGGAGGA
GGAAGAGGAGGAAGAGGAGGAGGATGAGGAGGAAGAGGACAGGAGATAGGGACAGGATGACACA
GCTCTGGCCTAGGACGATGGACCACCGGACTCCTTTCTGCAGCACATGCCTGTGCCCTGTGAGC
CCCCATCTGCCACGGTCACATGGACACAGCCAGCGCTAAATCACGGGGCATCCCTCACACCACA
GGCTAAACACAGTCTCATATCCCTGCCCCTTCCTGCATTGTGCCTCACAACCAGACACGTGCAG
ACACCACGTCACACCCCCACACACAGCTCGGCCACACACACAGCCAGCTGCTGCACATCACCCT
CCAAACCATCCCACTCTGCCCAGGCCCGCCACTGCTGCCTTGCCTGCTCCCTGAGTCATGCAGA
CTTGGGGAAGGATCTGGCCTATGAGAGAGCCCACTCCCTCCTGTTGACACACACACACACACAC
ACACACACACACACACACACACACACACACAAGCAAATATACAAATCACTTGCCATCTGCCCCA
TCCTCTGTCCATCAGTCCCCTGGAGAAGACACAGCTCAGCTCCTAGTTCTGTGGTGGTGGGGTA
CTTTCCACTCTCTGGAACTCACAAAAGCTGGCTTTTGTTCCTATTCCTCCCTTTGCGGACAGGA
ACCTTTTGGACTTCTGCCCTGGCTCTGCCCCTGCCCCCAGGTGCTAGAGCAGTCACCCTGCTGA
GAGCCCCATCCTGCCTTGCCCTGTCAGGCTGCAGGCACTTTCTGATAGACAAGCCCCACTGAGG
GAGCTTTGGGGCAGGAGGGAGGCAAGGCCCAGAGGATCCAGAAAAGGCCCAGCTGTGCCTCTAA
GACACTCTTGAATCTTTGGGCCTGCAGGGAAGTTCTGGGTGCTTTGGGTGTTGTTTTTTAAGGA
AAAAAATGATAAAAATCTCAAAGTTGATTTTTCTTGTTACAGAAAATCTAATATAAAAGCATTA
TCCCTGTCCTTGCA

hide sequence

RefSeq Acc Id:

XM_013358950 ⟹ XP_013214404

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,420,971 - 67,442,239 (+)	NCBI
SpeTri2.0	NW_004936522	7,974,055 - 7,995,195 (-)	NCBI

Sequence:

show sequence

ATGCACGCGGGGTGGGGGCGGGGAGAGGCGGGGAGAAGAAAACTCACAACAAAACTTGCGTCGC
GGCGCGCACGGCTCGACTTGAATGGAAGGAGCCCGCGTCCGCGGAGCGCAGCCGAGACACGGGA
GAGAGTGTTCAGCCGGCGGGACGCGGCACCGCGCGGGGCGCAGCAGGTACCATGGCCCAGAGCA
GGGCACTGCTGCTCCTGCTGCTGTTGCCACCACAGCTACACCTGGGACCTGTGCTCGCAGTGAG
GGCCCCAATGTTTGGCCGAAGCAGCACCCACAGTCTGAGCCCTGAGGAGAATGAATTTGTGGAG
GAGGAGCCTGTGCTGGTCCTAAGCCCCGAGGAGCCAGGGCCTGGCCCAGCTACTGTTGACTGTC
CCCGAGACTGTGCCTGCTCCCAGGAGGGTGTTGTGGACTGTGGTGGCATCGACCTGCGTGAGTT
CCCCGGGGACCTGCCTGAGCACACCAACCATCTGTCCCTGCAGAACAATCAGCTGGAGAAGATC
TATCCTGAGGAGCTTTCTCGGCTCCAGCGGCTGGAGACTCTGAACCTCCAGAACAATCGCCTGA
CTTCCAGAGGGCTCCCGGAGGAGGCATTTGAGCATCTGACCAACCTCAACTACCTGTACCTGGC
CAACAACAAGCTGACATTGGCACCTCGATTCCTGCCAAATGCCCTGATCAGCGTGGACTTTGCT
GCCAACTATCTCACCAAGATCTATGGGCTCACCTTTGGCCAGAAGCCAAATTTGAGGTCTGTGT
ATCTGCACAACAACAAACTAGCAGATGCGGGGCTGCCGGACAGCATGTTCAACGGCTCCAGCAA
TGTTGAGATCCTCATCCTGTCCAGCAACTTCCTGCGCCATGTGCCCAAGCACCTGCCACCTGCC
CTGTACAAGCTGCACCTCAAGAACAACAAGCTGGAAAAGATCCCCCCTGGGGCCTTCAGTGAGC
TGAGCAACCTGCGAGAGCTGTATCTGCAGAACAACTACCTGACTGATGAGGGCCTGGACAACGA
GACCTTCTGGAAGCTCTCCAGCCTAGAGTACCTGGATCTGTCTAGCAACAACTTGACGCGGGTC
CCTGCAGGACTGCCTCGGAGCCTGGTCCTGTTGCACCTGGAGAAGAATGTCATCCGGAGTGTGG
ACGCCGACGTGCTGACCCCCATCCGCAGCCTTGAGTACCTGCTGCTGCACAGCAACCAGCTGCA
GGCAGACGGTATCCACCCGCTGGCGTTCCAGGGCCTCAAGCGGCTGCACACCGTGCACCTGTAT
AACAACGCCCTGGAGCGCGTGCCCAGCGGCCTGCCCCGGCGCGTGCGCACCCTCATGATCCTGC
ACAACCAGATCACGGGCATCGGCCGTGAGGACTTCGCTACCACCTACTTCCTGGAGGAGCTCAA
CCTCAGCTACAACCGCATCACCAGCCCTCAGATACACCGCGATGCCTTCCGCAAGCTGCGCCTC
CTGCGCTCACTTGACCTTTCCGGCAATCGCTTGCACACGCTGCCACCCGGCCTGCCACGCAATG
TGCACGTGCTGAAGGTCAAGCGCAATGAGCTGGCTGCTCTGGCACGCGGGGCGCTGGCAGGCAT
GGCCCAACTGCGGGAGCTCTACCTCACTGGCAACCGACTCCGCAGCCGGGCCCTGGGTCCCCGT
GCTTGGGTGGACCTCGCCCATCTGCAGCTGCTGGACATTGCTGGGAATCAGCTCACGGAGATCC
CCGAGGGGCTTCCCAAGTCTCTCGAGTACCTGTACCTGCAGAACAACAAGATTAGCACCGTGCC
TGCCAATGCCTTCGACTCCACACCCAACCTCAAGGGGATCTTTCTCAGGTTTAACAAGCTGGCC
GTGGGCTCTGTGGTGGAAAGTGCTTTCCGGAGGCTGAAGCACCTACAGGTCTTGGACATCGAAG
GCAACTTTGAGTTTGGTGACGTTTCCAAGAACCGTGGCCACTTAGAGAAGGAAGAAGAGGAGGA
GGAAGAGGAGGAAGAGGAGGAGGATGAGGAGGAAGAGGACAGGAGATAGGGACAGGATGACACA
GCTCTGGCCTAGGATGGTTGTGGCTGGTAGCTCTGTCCTGGGCTGGCCCCTGACCTCTCCTACA
TGTTCTGCAGGACGATGGACCACCGGACTCCTTTCTGCAGCACATGCCTGTGCCCTGTGAGCCC
CCATCTGCCACGGTCACATGGACACAGCCAGCGCTAAATCACGGGGCATCCCTCACACCACAGG
CTAAACACAGTCTCATATCCCTGCCCCTTCCTGCATTGTGCCTCACAACCAGACACGTGCAGAC
ACCACGTCACACCCCCACACACAGCTCGGCCACACACACAGCCAGCTGCTGCACATCACCCTCC
AAACCATCCCACTCTGCCCAGGCCCGCCACTGCTGCCTTGCCTGCTCCCTGAGTCATGCAGACT
TGGGGAAGGATCTGGCCTATGAGAGAGCCCACTCCCTCCTGTTGACACACACACACACACACAC
ACACACACACACACACACACACACACACAAGCAAATATACAAATCACTTGCCATCTGCCCCATC
CTCTGTCCATCAGTCCCCTGGAGAAGACACAGCTCAGCTCCTAGTTCTGTGGTGGTGGGGTACT
TTCCACTCTCTGGAACTCACAAAAGCTGGCTTTTGTTCCTATTCCTCCCTTTGCGGACAGGAAC
CTTTTGGACTTCTGCCCTGGCTCTGCCCCTGCCCCCAGGTGCTAGAGCAGTCACCCTGCTGAGA
GCCCCATCCTGCCTTGCCCTGTCAGGCTGCAGGCACTTTCTGATAGACAAGCCCCACTGAGGGA
GCTTTGGGGCAGGAGGGAGGCAAGGCCCAGAGGATCCAGAAAAGGCCCAGCTGTGCCTCTAAGA
CACTCTTGAATCTTTGGGCCTGCAGGGAAGTTCTGGGTGCTTTGGGTGTTGTTTTTTAAGGAAA
AAAATGATAAAAATCTCAAAGTTGATTTTTCTTGTTACAGAAAATCTAATATAAAAGCATTATC
CCTGTCCTTGCA

hide sequence

RefSeq Acc Id:

XM_013358951 ⟹ XP_013214405

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,420,970 - 67,462,865 (+)	NCBI
SpeTri2.0	NW_004936522	7,954,541 - 7,995,195 (-)	NCBI

Sequence:

show sequence

ATGCACGCGGGGTGGGGGCGGGGAGAGGCGGGGAGAAGAAAACTCACAACAAAACTTGCGTCGC
GGCGCGCACGGCTCGACTTGAATGGAAGGAGCCCGCGTCCGCGGAGCGCAGCCGAGACACGGGA
GAGAGTGTTCAGCCGGCGGGACGCGGCACCGCGCGGGGCGCAGCAGGTACCATGGCCCAGAGCA
GGGCACTGCTGCTCCTGCTGCTGTTGCCACCACAGCTACACCTGGGACCTGTGCTCGCAGTGAG
GGCCCCAATGTTTGGCCGAAGCAGCACCCACAGTCTGAGCCCTGAGGAGAATGAATTTGTGGAG
GAGGAGCCTGTGCTGGTCCTAAGCCCCGAGGAGCCAGGGCCTGGCCCAGCTACTGTTGACTGTC
CCCGAGACTGTGCCTGCTCCCAGGAGGGTGTTGTGGACTGTGGTGGCATCGACCTGCGTGAGTT
CCCCGGGGACCTGCCTGAGCACACCAACCATCTGTCCCTGCAGAACAATCAGCTGGAGAAGATC
TATCCTGAGGAGCTTTCTCGGCTCCAGCGGCTGGAGACTCTGAACCTCCAGAACAATCGCCTGA
CTTCCAGAGGGCTCCCGGAGGAGGCATTTGAGCATCTGACCAACCTCAACTACCTGTACCTGGC
CAACAACAAGCTGACATTGGCACCTCGATTCCTGCCAAATGCCCTGATCAGCGTGGACTTTGCT
GCCAACTATCTCACCAAGATCTATGGGCTCACCTTTGGCCAGAAGCCAAATTTGAGGTCTGTGT
ATCTGCACAACAACAAACTAGCAGATGCGGGGCTGCCGGACAGCATGTTCAACGGCTCCAGCAA
TGTTGAGATCCTCATCCTGTCCAGCAACTTCCTGCGCCATGTGCCCAAGCACCTGCCACCTGCC
CTGTACAAGCTGCACCTCAAGAACAACAAGCTGGAAAAGATCCCCCCTGGGGCCTTCAGTGAGC
TGAGCAACCTGCGAGAGCTGTATCTGCAGAACAACTACCTGACTGATGAGGGCCTGGACAACGA
GACCTTCTGGAAGCTCTCCAGCCTAGAGTACCTGGATCTGTCTAGCAACAACTTGACGCGGGTC
CCTGCAGGACTGCCTCGGAGCCTGGTCCTGTTGCACCTGGAGAAGAATGTCATCCGGAGTGTGG
ACGCCGACGTGCTGACCCCCATCCGCAGCCTTGAGTACCTGCTGCTGCACAGCAACCAGCTGCA
GGCAGACGGTATCCACCCGCTGGCGTTCCAGGGCCTCAAGCGGCTGCACACCGTGCACCTGTAT
AACAACGCCCTGGAGCGCGTGCCCAGCGGCCTGCCCCGGCGCGTGCGCACCCTCATGATCCTGC
ACAACCAGATCACGGGCATCGGCCGTGAGGACTTCGCTACCACCTACTTCCTGGAGGAGCTCAA
CCTCAGCTACAACCGCATCACCAGCCCTCAGATACACCGCGATGCCTTCCGCAAGCTGCGCCTC
CTGCGCTCACTTGACCTTTCCGGCAATCGCTTGCACACGCTGCCACCCGGCCTGCCACGCAATG
TGCACGTGCTGAAGGTCAAGCGCAATGAGCTGGCTGCTCTGGCACGCGGGGCGCTGGCAGGCAT
GGCCCAACTGCGGGAGCTCTACCTCACTGGCAACCGACTCCGCAGCCGGGCCCTGGGTCCCCGT
GCTTGGGTGGACCTCGCCCATCTGCAGCTGCTGGACATTGCTGGGAATCAGCTCACGGAGATCC
CCGAGGGGCTTCCCAAGTCTCTCGAGTACCTGTACCTGCAGAACAACAAGATTAGCACCGTGCC
TGCCAATGCCTTCGACTCCACACCCAACCTCAAGGGGATCTTTCTCAGGTTTAACAAGCTGGCC
GTGGGCTCTGTGGTGGAAAGTGCTTTCCGGAGGCTGAAGCACCTACAGGTCTTGGACATCGAAG
GCAACTTTGAGTTTGGTGACGTTTCCAAGAACCGTGGCCACTTAGAGAAGGAAGAAGAGGAGGA
GGAAGAGGAGGAAGAGGAGGAGGATGAGGAGGAAGAGGACAGGAGATAGGGACAGGATGACACA
GCTCTGGCCTAGCATAAAAGGATGCCCAGACAAGCTCTCTCCTAGAATCCTGTTGCCACCCTGA
ATGAAGCTGGACTGGCCTGCCAGAGTAAAGACCACACACAGCCCTGCTGAGCCATGTCAGCCAA
GCCATCCATTCCACAGTGGGGCCATTGGCCTCCTGCAGGCCATGACTGAGCTCAGCCAAATCAG
CAGATCCTCCCAGCTGACTGTAGACTCCTGGTGGTCATTTCAAACACAAAAATCTTAGGTAGTT
TGTTACACAGCAGTAACTGACTGACACAGAGGGTGAGAGTTTTTTTTAAAGAGGGGGAGAGAAG
CTGTGCTAGGCATGTATCCCCATGGGGGATGAGAGGAATGCTTCTCCCTAAACTGAAGTCAGGA
GAACTATTCAGAGATCTTGGCTCATGTTCCCCAGGGTTTGAGGAATGTAGGGGCTGGTGCCTGA
CTCATGTCCAAAGGCCCTGGGAAAGACCTGCACTTCTAACAAGAATATGTATTCTTTCCCATGG
GCCAGTCACAGAAGGGACTCTGCCCAAGAGCATCACCTAGAGGGGTGAGTTGACCACAGCAGAG
GGAAAAGCTGAGATTAACCAGAGATCAGGCCTGAGGAGGGTGCTTGAAGCAGACAGATGGAAGA
GATATAAAGATGTAGATCAAATGAACCCACAAAATTATCCCTAAAGAATCTCAACCAGGGAGCC
CCACTGCAGCATACTCATCCCTGTAAGGGAGGATCTTGCAGTGCCCCCAGCCTCCCCTCTCTCC
TTGCTGCTCCAACCCCAGTGCTGGCAGCAGAGGAGCAGACAGAAGAAGAGAAACACTGGCGATC
CCCTTCCCACTGCAGCTTCCTGAGCTTGATCAGATCCTCAAGGCTAGGACAGGATTAGTTTTAA
ATTGAATGAGTCTGGAGTTTTAATATTAGACAGGCCGAGACTCCTTATATCCTAAATTGGCTGG
AAAATGAGAGGGACAAGGAGGACTCCACAGGGCAAGTTTAACGGGGTAGCAGGTCAAGTCCACC
AGGCCATTCCCAGGTGTGTGTGCTTCTGCAGGCACCATCTAGTCCCTCGTCCACACTCACATGG
TCCTGGGATAGACACCATCAGGGCCACCTACTGCTTCTACTCTGGTACTTTCCAAATCTCCATC
TCAAGCTCACTCTCTCCCATAAGATTGAGATCCATTGGGCAAACACCAGCTGGCATCTACCCTG
GGAGGTCTGTCCCTGCACTGGTACCTCCTGTGTCTTGGTGTCCACACTGCTGTCCACTTGGATT
ATCAGGCCAGAAACATGCATGTCAGCGCCATCCACCTCCTCCAGCCTCACTTCCATTTCTTCTT
CC

hide sequence

RefSeq Acc Id:

XM_040288685 ⟹ XP_040144619

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,420,970 - 67,442,239 (+)	NCBI

RefSeq Acc Id:

XM_040288686 ⟹ XP_040144620

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,420,479 - 67,442,239 (+)	NCBI

RefSeq Acc Id:

XM_040288687 ⟹ XP_040144621

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,423,072 - 67,442,239 (+)	NCBI

RefSeq Acc Id:

XM_040288688 ⟹ XP_040144622

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	67,429,323 - 67,442,239 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326108	(Get FASTA)	NCBI Sequence Viewer
	XP_013214404	(Get FASTA)	NCBI Sequence Viewer
	XP_013214405	(Get FASTA)	NCBI Sequence Viewer
	XP_040144619	(Get FASTA)	NCBI Sequence Viewer
	XP_040144620	(Get FASTA)	NCBI Sequence Viewer
	XP_040144621	(Get FASTA)	NCBI Sequence Viewer
	XP_040144622	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009367.3
GenBank Protein	KAG3283191	(Get FASTA)	NCBI Sequence Viewer
	KAG3283192	(Get FASTA)	NCBI Sequence Viewer
	KAG3283193	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013214405 ⟸ XM_013358951
- Peptide Label:	isoform X1
- UniProtKB:	I3MFH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQSRALLLLLLLPPQLHLGPVLAVRAPMFGRSSTHSLSPEENEFVEEEPVLVLSPEEPGPGPA TVDCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLQRLETLNLQ NNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPN LRSVYLHNNKLADAGLPDSMFNGSSNVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPG AFSELSNLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLTRVPAGLPRSLVLLHLEKNV IRSVDADVLTPIRSLEYLLLHSNQLQADGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRT LMILHNQITGIGREDFATTYFLEELNLSYNRITSPQIHRDAFRKLRLLRSLDLSGNRLHTLPPG LPRNVHVLKVKRNELAALARGALAGMAQLRELYLTGNRLRSRALGPRAWVDLAHLQLLDIAGNQ LTEIPEGLPKSLEYLYLQNNKISTVPANAFDSTPNLKGIFLRFNKLAVGSVVESAFRRLKHLQV LDIEGNFEFGDVSKNRGHLEKEEEEEEEEEEEEDEEEEDRR hide sequence

RefSeq Acc Id:	XP_005326108 ⟸ XM_005326051
- Peptide Label:	isoform X1
- UniProtKB:	I3MFH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQSRALLLLLLLPPQLHLGPVLAVRAPMFGRSSTHSLSPEENEFVEEEPVLVLSPEEPGPGPA TVDCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLQRLETLNLQ NNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPN LRSVYLHNNKLADAGLPDSMFNGSSNVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPG AFSELSNLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLTRVPAGLPRSLVLLHLEKNV IRSVDADVLTPIRSLEYLLLHSNQLQADGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRT LMILHNQITGIGREDFATTYFLEELNLSYNRITSPQIHRDAFRKLRLLRSLDLSGNRLHTLPPG LPRNVHVLKVKRNELAALARGALAGMAQLRELYLTGNRLRSRALGPRAWVDLAHLQLLDIAGNQ LTEIPEGLPKSLEYLYLQNNKISTVPANAFDSTPNLKGIFLRFNKLAVGSVVESAFRRLKHLQV LDIEGNFEFGDVSKNRGHLEKEEEEEEEEEEEEDEEEEDRR hide sequence

RefSeq Acc Id:	XP_013214404 ⟸ XM_013358950
- Peptide Label:	isoform X1
- UniProtKB:	I3MFH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQSRALLLLLLLPPQLHLGPVLAVRAPMFGRSSTHSLSPEENEFVEEEPVLVLSPEEPGPGPA TVDCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLQRLETLNLQ NNRLTSRGLPEEAFEHLTNLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTFGQKPN LRSVYLHNNKLADAGLPDSMFNGSSNVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPG AFSELSNLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLTRVPAGLPRSLVLLHLEKNV IRSVDADVLTPIRSLEYLLLHSNQLQADGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRT LMILHNQITGIGREDFATTYFLEELNLSYNRITSPQIHRDAFRKLRLLRSLDLSGNRLHTLPPG LPRNVHVLKVKRNELAALARGALAGMAQLRELYLTGNRLRSRALGPRAWVDLAHLQLLDIAGNQ LTEIPEGLPKSLEYLYLQNNKISTVPANAFDSTPNLKGIFLRFNKLAVGSVVESAFRRLKHLQV LDIEGNFEFGDVSKNRGHLEKEEEEEEEEEEEEDEEEEDRR hide sequence

RefSeq Acc Id:	XP_040144620 ⟸ XM_040288686
- Peptide Label:	isoform X1
- UniProtKB:	I3MFH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144619 ⟸ XM_040288685
- Peptide Label:	isoform X1
- UniProtKB:	I3MFH4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040144621 ⟸ XM_040288687
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040144622 ⟸ XM_040288688
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000009367 ⟸ ENSSTOT00000010436

Protein Domains

LRRNT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010433	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010436.3	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_5	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
NCBI Gene	Podn	ENTREZGENE
PANTHER	AGAP008170-PA	UniProtKB/TrEMBL
	LEUCINE RICH REPEAT FAMILY PROTEIN	UniProtKB/TrEMBL
Pfam	LRR_5	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PRINTS	LEURICHRPT	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_BAC	UniProtKB/TrEMBL
	LRR_RI	UniProtKB/TrEMBL
	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	RNI-like	UniProtKB/TrEMBL
UniProt	I3MFH4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar