Gm12610 (predicted gene 12610) - Rat Genome Database

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Gene: Gm12610 (predicted gene 12610) Mus musculus
Analyze
Symbol: Gm12610
Name: predicted gene 12610
RGD ID: 9662924
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ANRIL; Gm12609; LncR-APDC; predicted gene 12609
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39489,213,417 - 89,406,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl489,213,089 - 89,452,672 (+)EnsemblGRCm39 Ensembl
GRCm38489,295,180 - 89,518,621 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl489,421,848 - 89,463,487 (+)EnsemblGRCm38mm10GRCm38
Celera487,908,346 - 87,976,042 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:28122089   PMID:29118015   PMID:30565672   PMID:31674275   PMID:32400082  
PMID:34080525   PMID:34469488   PMID:35359242   PMID:35906216   PMID:35984863   PMID:36346049   PMID:37928259   PMID:37953645  


Genomics

Variants

.
Variants in Gm12610
4916 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSMUST00000139272
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
10412176Habiir3_mhyperoxic acute lung injury imprinted region 3 (mouse)Not determined48375713094293740Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1300601Tlsr1_mthymic lymphoma suppressor region 1 (mouse)Not determined48860115894957775Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000129908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,270,194 - 89,310,040 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,310,085 - 89,351,724 (+)Ensembl
GRCm38.p6 Ensembl489,421,848 - 89,463,487 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,089 - 89,348,979 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,417 - 89,406,858 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,131 - 89,351,725 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,400 - 89,403,928 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,649 - 89,214,986 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,661 - 89,351,721 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,214,809 - 89,341,853 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,229,400 - 89,310,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,229,799 - 89,351,716 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,230,173 - 89,349,292 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,268,592 - 89,280,261 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,270,915 - 89,349,837 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,275,403 - 89,351,725 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,288,048 - 89,351,692 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,313,574 - 89,403,922 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,314,395 - 89,351,716 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,314,395 - 89,356,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,340,474 - 89,406,486 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,340,476 - 89,348,590 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,340,476 - 89,351,715 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,343,471 - 89,452,664 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,349,214 - 89,452,672 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,119 - 89,215,070 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,342 - 89,231,711 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,213,550 - 89,280,140 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,268,044 - 89,310,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,268,102 - 89,280,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,271,497 - 89,310,136 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,278,976 - 89,310,831 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,340,868 - 89,433,600 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,351,529 - 89,394,485 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,363,028 - 89,406,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl489,444,054 - 89,452,663 (+)Ensembl
RefSeq Acc Id: NR_132431
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39489,213,417 - 89,406,858 (+)NCBI
GRCm38489,295,180 - 89,518,621 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086035 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240726 ENTREZGENE
MGD MGI:3652143 ENTREZGENE
NCBI Gene Gm12610 ENTREZGENE
PhenoGen Gm12610 PhenoGen
RNAcentral URS00008E396E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Gm12610  predicted gene 12610  Gm12609  predicted gene 12609  Data merged from RGD:9613969 737654 PROVISIONAL