Pomgnt1 (protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase) - Rat Genome Database
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Gene: Pomgnt1 (protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase) Mus musculus
Analyze
Symbol: Pomgnt1
Name: protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
RGD ID: 1553166
MGI Page MGI
Description: Predicted to have beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Involved in protein O-linked glycosylation. Predicted to localize to integral component of Golgi membrane. Is expressed in several structures, including alimentary system; genitourinary system; liver; nervous system; and respiratory system. Used to study Walker-Warburg syndrome and muscular dystrophy-dystroglycanopathy. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610016I07Rik; 4930467B06Rik; O-mannosyl N-acetylglucosaminyltransferase; protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1; RP23-319H15.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBImm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal basement membrane morphology  (IAGP)
abnormal brain development  (IEA)
abnormal brain pia mater morphology  (IAGP)
abnormal Cajal-Retzius cell morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar hemisphere morphology  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal inferior colliculus morphology  (IAGP)
abnormal meninges morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal muscle regeneration  (IAGP)
abnormal neocortex morphology  (IAGP)
abnormal optic nerve morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal retina inner limiting membrane morphology  (IAGP)
abnormal retinal blood vessel pattern  (IEA)
abnormal retinal layer morphology  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle satellite cell proliferation  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal superior colliculus morphology  (IAGP)
abnormal tongue muscle morphology  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
decreased body size  (IAGP)
decreased circulating glucose level  (IEA)
decreased litter size  (IAGP)
decreased retinal ganglion cell number  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
decreased skeletal muscle fiber size  (IAGP)
dilated lateral ventricles  (IAGP)
dystrophic muscle  (IAGP)
hydrocephaly  (IAGP)
impaired basement membrane formation  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
limb grasping  (IAGP)
male infertility  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
reduced female fertility  (IAGP)
retina microaneurysm  (IEA)
retinal degeneration  (IEA)
small cerebellum  (IAGP)
thin cerebral cortex  (IAGP)
thin retinal inner nuclear layer  (IAGP)
thin retinal outer nuclear layer  (IAGP)
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12670716   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16458488   PMID:17034757   PMID:17967808   PMID:18295407   PMID:18490429   PMID:18799693   PMID:19017726   PMID:19114101   PMID:20562862   PMID:20680099   PMID:20816176  
PMID:21129441   PMID:21267068   PMID:21447391   PMID:21460210   PMID:21873635   PMID:22270369   PMID:22728091   PMID:23118208   PMID:23454088   PMID:24256719   PMID:24952961   PMID:25085363  
PMID:25737452   PMID:26306834   PMID:30550785   PMID:32290105   PMID:32325033   PMID:32453729  


Genomics

Comparative Map Data
Pomgnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBImm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
POMGNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl146,188,682 - 46,220,305 (-)EnsemblGRCh38hg38GRCh38
GRCh38146,188,683 - 46,220,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37146,654,355 - 46,685,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,426,940 - 46,436,708 (-)NCBINCBI36hg18NCBI36
Celera144,941,643 - 44,973,721 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef144,769,330 - 44,801,277 (-)NCBIHuRef
CHM1_1146,771,477 - 46,803,118 (-)NCBICHM1_1
Pomgnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25129,634,274 - 129,644,150 (+)NCBI
Rnor_6.0 Ensembl5135,007,343 - 135,017,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,007,343 - 135,017,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05138,791,235 - 138,801,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,429,379 - 136,439,254 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15136,434,604 - 136,444,480 (+)NCBI
Celera5128,162,654 - 128,172,461 (+)NCBICelera
Cytogenetic Map5q35NCBI
Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,077,406 - 12,086,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,076,815 - 12,086,961 (+)NCBIChiLan1.0ChiLan1.0
POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1146,849,528 - 46,859,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,849,528 - 46,859,137 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0145,494,834 - 45,525,804 (-)NCBIMhudiblu_PPA_v0panPan3
POMGNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,176,932 - 14,187,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,178,357 - 14,187,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,299,079 - 14,309,089 (+)NCBI
ROS_Cfam_1.01514,329,378 - 14,339,540 (+)NCBI
UMICH_Zoey_3.11514,130,602 - 14,140,611 (+)NCBI
UNSW_CanFamBas_1.01514,199,089 - 14,209,095 (+)NCBI
UU_Cfam_GSD_1.01514,268,643 - 14,278,728 (+)NCBI
Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,404,486 - 61,417,843 (-)NCBI
SpeTri2.0NW_00493647427,229,262 - 27,239,034 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,212,833 - 165,222,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,692,300 - 152,701,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMGNT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,588,049 - 86,597,576 (+)NCBI
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)Ensembl
Pomgnt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249062,120,759 - 2,131,024 (-)NCBI

Position Markers
36.MMHAP9FRD12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,141,892 - 116,142,057UniSTSGRCm38
MGSCv374115,814,497 - 115,814,662UniSTSGRCm37
Celera4114,880,040 - 114,880,205UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map4D1UniSTS
Whitehead_YAC4 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117215009Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465400000119000000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482356158116356345Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483747673117747809Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485571641119571840Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485571641119571840Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485923970119924082Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485923970119924082Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488200000118700000Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)489063832116413923Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)490000000119000000Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)493118593127118593Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494875058128875257Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined495069342128115487Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498657302128115487Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4101000000125000000Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101717404123233418Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4111000000126000000Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3932
Count of miRNA genes:748
Interacting mature miRNAs:963
Transcripts:ENSMUST00000106494, ENSMUST00000106496, ENSMUST00000106498, ENSMUST00000120083, ENSMUST00000121052, ENSMUST00000127426, ENSMUST00000133838, ENSMUST00000136855, ENSMUST00000144311, ENSMUST00000147612, ENSMUST00000151325, ENSMUST00000155718
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_376348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB053220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB053221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI848361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY732188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000106494   ⟹   ENSMUSP00000102103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,151,431 - 116,159,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106496   ⟹   ENSMUSP00000102105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,150,525 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106498   ⟹   ENSMUSP00000102107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,150,518 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120083   ⟹   ENSMUSP00000112751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,137,237 - 116,159,848 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121052   ⟹   ENSMUSP00000112911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,137,755 - 116,159,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,155,937 - 116,156,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,155,319 - 116,158,994 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136855
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,137,252 - 116,159,849 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144311
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,123,840 - 116,138,850 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147612
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,154,595 - 116,155,792 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,157,392 - 116,159,025 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,155,949 - 116,159,058 (+)Ensembl
RefSeq Acc Id: NM_001290658   ⟹   NP_001277587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,008,628 - 116,017,041 (+)NCBI
GRCm384116,151,431 - 116,159,844 (+)NCBI
Celera4114,888,693 - 114,898,002 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026651   ⟹   NP_080927
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,715 - 116,017,041 (+)NCBI
GRCm384116,150,518 - 116,159,844 (+)NCBI
MGSCv374115,823,123 - 115,832,449 (+)RGD
Celera4114,888,693 - 114,898,002 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029786   ⟹   NP_084062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,715 - 116,017,041 (+)NCBI
GRCm384116,150,518 - 116,159,844 (+)NCBI
MGSCv374115,823,123 - 115,832,449 (+)RGD
Celera4114,888,693 - 114,898,002 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004941951
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,700 - 116,017,041 (+)NCBI
RefSeq Acc Id: XR_376348
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,007,700 - 116,017,041 (+)NCBI
GRCm384116,150,498 - 116,159,844 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084062   ⟸   NM_029786
- Peptide Label: isoform 2
- UniProtKB: Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_080927   ⟸   NM_026651
- Peptide Label: isoform 1
- UniProtKB: Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277587   ⟸   NM_001290658
- Peptide Label: isoform 3
- UniProtKB: Q91X88 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000102103   ⟸   ENSMUST00000106494
RefSeq Acc Id: ENSMUSP00000102105   ⟸   ENSMUST00000106496
RefSeq Acc Id: ENSMUSP00000102107   ⟸   ENSMUST00000106498
RefSeq Acc Id: ENSMUSP00000112911   ⟸   ENSMUST00000121052
RefSeq Acc Id: ENSMUSP00000112751   ⟸   ENSMUST00000120083

Promoters
RGD ID:6835893
Promoter ID:MM_KWN:39134
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000079267,   ENSMUST00000079561,   NM_026651,   NM_029786,   OTTMUST00000021134
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,822,816 - 115,824,217 (+)MPROMDB
RGD ID:6835894
Promoter ID:MM_KWN:39137
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   Spleen
Transcripts:OTTMUST00000021136,   OTTMUST00000021137,   OTTMUST00000021138
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,827,646 - 115,828,617 (+)MPROMDB
RGD ID:6835896
Promoter ID:MM_KWN:39138
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000071172
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364115,830,276 - 115,830,776 (+)MPROMDB
RGD ID:6884290
Promoter ID:EPDNEW_M5596
Type:initiation region
Name:Pomgnt1_1
Description:Mus musculus protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5597  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,150,516 - 116,150,576EPDNEW
RGD ID:6884292
Promoter ID:EPDNEW_M5597
Type:initiation region
Name:Pomgnt1_2
Description:Mus musculus protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5596  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,151,461 - 116,151,521EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915523 AgrOrtholog
Ensembl Genes ENSMUSG00000028700 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000102103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000102105 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000102107 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112751 UniProtKB/Swiss-Prot
  ENSMUSP00000112911 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000106494 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106496 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106498 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120083 UniProtKB/Swiss-Prot
  ENSMUST00000121052 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.550.10 UniProtKB/Swiss-Prot
InterPro Glyco_trans_13 UniProtKB/Swiss-Prot
  ILEI/PANDER_dom UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
  POMGNT1_PANDER-like UniProtKB/Swiss-Prot
KEGG Report mmu:68273 UniProtKB/Swiss-Prot
MGD MGI:1915523 ENTREZGENE
NCBI Gene 68273 ENTREZGENE
Pfam GNT-I UniProtKB/Swiss-Prot
  ILEI UniProtKB/Swiss-Prot
PhenoGen Pomgnt1 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt PMGT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A2A8F8 UniProtKB/Swiss-Prot
  Q9D2H7 UniProtKB/Swiss-Prot
  Q9D5D3 UniProtKB/Swiss-Prot
  Q9DCN3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-17 Pomgnt1  protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase    protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase  Symbol and/or name change 5135510 APPROVED