Ahdc1 (AT hook, DNA binding motif, containing 1) - Rat Genome Database

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Gene: Ahdc1 (AT hook, DNA binding motif, containing 1) Mus musculus
Analyze
Symbol: Ahdc1
Name: AT hook, DNA binding motif, containing 1
RGD ID: 1552164
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity and promoter-enhancer loop anchoring activity. Involved in mesoderm formation and skin morphogenesis. Predicted to be located in chromosome. Predicted to be active in nucleus. Is expressed in brain; embryo; and limb. Used to study Xia-Gibbs Syndrome. Human ortholog(s) of this gene implicated in Xia-Gibbs Syndrome. Orthologous to human AHDC1 (AT-hook DNA binding motif containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: a.T hook DNA-binding motif-containing protein 1; AT-hook DNA-binding motif-containing protein 1; D030015G18Rik; MGC29331; RIKEN cDNA D030015G18 gene; RP23-125F21.2; transcription factor Gibbin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,738,797 - 132,805,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,738,571 - 132,805,421 (+)EnsemblGRCm39 Ensembl
GRCm384133,011,265 - 133,078,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,011,260 - 133,078,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv374132,567,421 - 132,634,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,283,582 - 132,349,318 (+)NCBIMGSCv36mm8
Celera4131,174,218 - 131,241,080 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
chromosome  (IEA)
nucleus  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15741512  
PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:20139417   PMID:21589869   PMID:21677750   PMID:25574029   PMID:28378742   PMID:29795351   PMID:33554859  
PMID:35585237   PMID:37819197  


Genomics

Comparative Map Data
Ahdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,738,797 - 132,805,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,738,571 - 132,805,421 (+)EnsemblGRCm39 Ensembl
GRCm384133,011,265 - 133,078,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,011,260 - 133,078,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv374132,567,421 - 132,634,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,283,582 - 132,349,318 (+)NCBIMGSCv36mm8
Celera4131,174,218 - 131,241,080 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.18NCBI
AHDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,534,245 - 27,604,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,534,035 - 27,604,431 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,860,756 - 27,930,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,343 - 27,802,730 (-)NCBINCBI36Build 36hg18NCBI36
Celera126,256,416 - 26,325,804 (-)NCBICelera
Cytogenetic Map1p36.11-p35.3NCBI
HuRef126,116,832 - 26,186,603 (-)NCBIHuRef
CHM1_1127,976,151 - 28,045,538 (-)NCBICHM1_1
T2T-CHM13v2.0127,375,551 - 27,445,533 (-)NCBIT2T-CHM13v2.0
Ahdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,512,182 - 150,578,804 (+)NCBIGRCr8
mRatBN7.25145,228,228 - 145,294,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,928,942 - 147,994,279 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,698,538 - 149,763,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,686,904 - 149,752,122 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,209,894 - 151,277,192 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,878,231 - 154,944,337 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,034,725 - 152,101,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,045,178 - 152,060,307 (-)NCBI
Celera5143,693,243 - 143,715,931 (+)NCBICelera
Cytogenetic Map5q36NCBI
Ahdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBIChiLan1.0ChiLan1.0
AHDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,249,065 - 199,318,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,365,500 - 198,435,147 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,794,800 - 26,864,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,840,765 - 27,910,728 (-)NCBIpanpan1.1PanPan1.1panPan2
AHDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,711,626 - 72,762,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,747,701 - 72,752,605 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,303,131 - 69,340,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,287,205 - 73,324,243 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1270,113,571 - 70,150,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,124,865 - 71,162,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,132,417 - 72,158,579 (+)NCBIUU_Cfam_GSD_1.0
Ahdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,999,853 - 46,052,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,824,697 - 11,876,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,824,692 - 11,846,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1684,735,253 - 84,774,554 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,330,133 - 78,339,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AHDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,187,943 - 105,257,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,416,674 - 11,482,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,416,674 - 11,482,622 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2295
Count of miRNA genes:673
Interacting mature miRNAs:830
Transcripts:ENSMUST00000044521, ENSMUST00000105914, ENSMUST00000105915, ENSMUST00000105916, ENSMUST00000135548, ENSMUST00000142524, ENSMUST00000145682, ENSMUST00000148518, ENSMUST00000154482, ENSMUST00000154646, ENSMUST00000156677
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
25394567Skmw55_mskeletal muscle weight 55, gastroc (mouse)4131437804133710576Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
14696808Rbcn1_mrod bipolar cell number 1 (mouse)4131947311134047311Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
25394568Skmw56_mskeletal muscle weight 56, EDL (mouse)4129859344133710576Mouse
12904009Cfq9_mconditioned fear QTL 9 (mouse)4130036287133772722Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse

Markers in Region
RH136440  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384133,071,709 - 133,071,907UniSTSGRCm38
MGSCv374132,627,624 - 132,627,822UniSTSGRCm37
Celera4131,234,691 - 131,234,889UniSTS
Cytogenetic Map4D2.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001404130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK038370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044521   ⟹   ENSMUSP00000047113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,739,515 - 132,804,956 (+)Ensembl
GRCm38.p6 Ensembl4133,012,204 - 133,077,645 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105914   ⟹   ENSMUSP00000101534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,766,804 - 132,804,553 (+)Ensembl
GRCm38.p6 Ensembl4133,039,493 - 133,077,242 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105915   ⟹   ENSMUSP00000101535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,738,817 - 132,805,174 (+)Ensembl
GRCm38.p6 Ensembl4133,011,506 - 133,077,863 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105916   ⟹   ENSMUSP00000101536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,738,817 - 132,805,421 (+)Ensembl
GRCm38.p6 Ensembl4133,011,506 - 133,078,110 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,738,854 - 132,788,422 (+)Ensembl
GRCm38.p6 Ensembl4133,011,543 - 133,061,111 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,739,403 - 132,789,087 (+)Ensembl
GRCm38.p6 Ensembl4133,012,092 - 133,061,776 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,738,876 - 132,782,394 (+)Ensembl
GRCm38.p6 Ensembl4133,011,565 - 133,055,083 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,793,560 - 132,799,374 (+)Ensembl
GRCm38.p6 Ensembl4133,066,249 - 133,072,063 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,739,361 - 132,788,133 (+)Ensembl
GRCm38.p6 Ensembl4133,012,050 - 133,060,822 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,738,571 - 132,788,131 (+)Ensembl
GRCm38.p6 Ensembl4133,011,260 - 133,060,820 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4132,739,149 - 132,804,939 (+)Ensembl
GRCm38.p6 Ensembl4133,011,838 - 133,077,628 (+)Ensembl
RefSeq Acc Id: NM_001404130   ⟹   NP_001391059
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,797 - 132,804,917 (+)NCBI
RefSeq Acc Id: NM_001404131   ⟹   NP_001391060
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,797 - 132,804,917 (+)NCBI
RefSeq Acc Id: NM_001404132   ⟹   NP_001391061
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,797 - 132,804,917 (+)NCBI
RefSeq Acc Id: NM_001404133   ⟹   NP_001391062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,797 - 132,804,917 (+)NCBI
RefSeq Acc Id: NM_146155   ⟹   NP_666267
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,817 - 132,805,421 (+)NCBI
GRCm384133,011,506 - 133,078,110 (+)NCBI
MGSCv374132,567,421 - 132,634,025 (+)RGD
Celera4131,174,218 - 131,241,080 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538734   ⟹   XP_006538797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,831 - 132,805,189 (+)NCBI
GRCm384133,011,520 - 133,077,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006538736   ⟹   XP_006538799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,850 - 132,805,189 (+)NCBI
GRCm384133,011,539 - 133,077,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006538739   ⟹   XP_006538802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,831 - 132,805,189 (+)NCBI
GRCm384133,011,520 - 133,077,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006538742   ⟹   XP_006538805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,831 - 132,804,165 (+)NCBI
GRCm384133,011,520 - 133,072,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250231   ⟹   XP_011248533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,831 - 132,805,189 (+)NCBI
GRCm384133,011,520 - 133,077,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253464   ⟹   XP_030109324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,738,850 - 132,805,189 (+)NCBI
GRCm384133,011,539 - 133,077,874 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164065   ⟹   XP_036019958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394132,767,008 - 132,805,185 (+)NCBI
Sequence:
RefSeq Acc Id: NP_666267   ⟸   NM_146155
- Peptide Label: isoform 1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538802   ⟸   XM_006538739
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538797   ⟸   XM_006538734
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538805   ⟸   XM_006538742
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538799   ⟸   XM_006538736
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248533   ⟸   XM_011250231
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109324   ⟸   XM_030253464
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000101534   ⟸   ENSMUST00000105914
Ensembl Acc Id: ENSMUSP00000101535   ⟸   ENSMUST00000105915
Ensembl Acc Id: ENSMUSP00000101536   ⟸   ENSMUST00000105916
Ensembl Acc Id: ENSMUSP00000047113   ⟸   ENSMUST00000044521
RefSeq Acc Id: XP_036019958   ⟸   XM_036164065
- Peptide Label: isoform X1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391059   ⟸   NM_001404130
- Peptide Label: isoform 1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391061   ⟸   NM_001404132
- Peptide Label: isoform 1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391060   ⟸   NM_001404131
- Peptide Label: isoform 1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391062   ⟸   NM_001404133
- Peptide Label: isoform 1
- UniProtKB: Q8VCU7 (UniProtKB/Swiss-Prot),   Q8C4Y6 (UniProtKB/Swiss-Prot),   Q6PAL7 (UniProtKB/Swiss-Prot),   Q5U5N7 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PAL7-F1-model_v2 AlphaFold Q6PAL7 1-1594 view protein structure

Promoters
RGD ID:6834786
Promoter ID:MM_KWN:39985
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000044521,   NM_146155,   OTTMUST00000023490,   OTTMUST00000023582,   OTTMUST00000023585,   OTTMUST00000023586,   OTTMUST00000023588,   OTTMUST00000023589,   UC008VCC.1,   UC008VCE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364132,567,381 - 132,568,197 (+)MPROMDB
RGD ID:6834784
Promoter ID:MM_KWN:39986
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000105914
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364132,594,706 - 132,595,587 (+)MPROMDB
RGD ID:6834785
Promoter ID:MM_KWN:39987
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000023587
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364132,621,211 - 132,621,757 (+)MPROMDB
RGD ID:6884926
Promoter ID:EPDNEW_M5914
Type:multiple initiation site
Name:Ahdc1_1
Description:Mus musculus AT hook, DNA binding motif, containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5915  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384133,011,539 - 133,011,599EPDNEW
RGD ID:6884928
Promoter ID:EPDNEW_M5915
Type:single initiation site
Name:Ahdc1_2
Description:Mus musculus AT hook, DNA binding motif, containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5914  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384133,049,517 - 133,049,577EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444218 AgrOrtholog
Ensembl Genes ENSMUSG00000037692 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044521.14 UniProtKB/Swiss-Prot
  ENSMUST00000105914 ENTREZGENE
  ENSMUST00000105914.2 UniProtKB/Swiss-Prot
  ENSMUST00000105915 ENTREZGENE
  ENSMUST00000105915.8 UniProtKB/Swiss-Prot
  ENSMUST00000105916 ENTREZGENE
  ENSMUST00000105916.8 UniProtKB/Swiss-Prot
InterPro AHDC1 UniProtKB/Swiss-Prot
  DUF4683 UniProtKB/Swiss-Prot
KEGG Report mmu:230793 UniProtKB/Swiss-Prot
MGD MGI:2444218 ENTREZGENE
NCBI Gene Ahdc1 ENTREZGENE
PANTHER AT-HOOK DNA-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR15617 UniProtKB/Swiss-Prot
Pfam DUF4683 UniProtKB/Swiss-Prot
PhenoGen Ahdc1 PhenoGen
UniProt AHDC1_MOUSE UniProtKB/Swiss-Prot
  Q5U5N7 ENTREZGENE
  Q6PAL7 ENTREZGENE
  Q8C4Y6 ENTREZGENE
  Q8VCU7 ENTREZGENE
UniProt Secondary Q5U5N7 UniProtKB/Swiss-Prot
  Q8C4Y6 UniProtKB/Swiss-Prot
  Q8VCU7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Ahdc1  AT hook, DNA binding motif, containing 1  D030015G18Rik  RIKEN cDNA D030015G18 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 D030015G18Rik  RIKEN cDNA D030015G18 gene  Ahdc1  AT hook, DNA binding motif, containing 1  Symbol and/or name change 5135510 APPROVED