Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ahdc1 | Mouse | Xia-Gibbs syndrome | | IAGP | | 13592920 | OMIM:615829 | MouseDO | | |
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Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ahdc1 | Mouse | Xia-Gibbs syndrome | | IAGP | | 13592920 | OMIM:615829 | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:10512203 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12520002 | PMID:12904583 | PMID:14610273 | PMID:15741512 |
PMID:15840001 | PMID:16141072 | PMID:16141073 | PMID:17967808 | PMID:18799693 | PMID:20139417 | PMID:21589869 | PMID:21677750 | PMID:25574029 | PMID:28378742 | PMID:29795351 | PMID:33554859 |
PMID:35585237 | PMID:37819197 |
Ahdc1 (Mus musculus - house mouse) |
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AHDC1 (Homo sapiens - human) |
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Ahdc1 (Rattus norvegicus - Norway rat) |
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Ahdc1 (Chinchilla lanigera - long-tailed chinchilla) |
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AHDC1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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AHDC1 (Canis lupus familiaris - dog) |
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Ahdc1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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AHDC1 (Sus scrofa - pig) |
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AHDC1 (Chlorocebus sabaeus - green monkey) |
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Ahdc1 (Heterocephalus glaber - naked mole-rat) |
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The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH136440 |
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Ensembl Acc Id: | ENSMUST00000044521 ⟹ ENSMUSP00000047113 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000105914 ⟹ ENSMUSP00000101534 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000105915 ⟹ ENSMUSP00000101535 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000105916 ⟹ ENSMUSP00000101536 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000135548 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000142524 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000145682 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000148518 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000154482 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000154646 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000156677 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001404130 ⟹ NP_001391059 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001404131 ⟹ NP_001391060 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001404132 ⟹ NP_001391061 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001404133 ⟹ NP_001391062 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_146155 ⟹ NP_666267 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006538734 ⟹ XP_006538797 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006538736 ⟹ XP_006538799 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006538739 ⟹ XP_006538802 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006538742 ⟹ XP_006538805 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011250231 ⟹ XP_011248533 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030253464 ⟹ XP_030109324 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036164065 ⟹ XP_036019958 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NP_666267 ⟸ NM_146155 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006538802 ⟸ XM_006538739 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006538797 ⟸ XM_006538734 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006538805 ⟸ XM_006538742 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006538799 ⟸ XM_006538736 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_011248533 ⟸ XM_011250231 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_030109324 ⟸ XM_030253464 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
Ensembl Acc Id: | ENSMUSP00000101534 ⟸ ENSMUST00000105914 |
Ensembl Acc Id: | ENSMUSP00000101535 ⟸ ENSMUST00000105915 |
Ensembl Acc Id: | ENSMUSP00000101536 ⟸ ENSMUST00000105916 |
Ensembl Acc Id: | ENSMUSP00000047113 ⟸ ENSMUST00000044521 |
RefSeq Acc Id: | XP_036019958 ⟸ XM_036164065 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | NP_001391059 ⟸ NM_001404130 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | NP_001391061 ⟸ NM_001404132 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | NP_001391060 ⟸ NM_001404131 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | NP_001391062 ⟸ NM_001404133 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8VCU7 (UniProtKB/Swiss-Prot), Q8C4Y6 (UniProtKB/Swiss-Prot), Q6PAL7 (UniProtKB/Swiss-Prot), Q5U5N7 (UniProtKB/Swiss-Prot) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6PAL7-F1-model_v2 | AlphaFold | Q6PAL7 | 1-1594 | view protein structure |
RGD ID: | 6834786 | ||||||||
Promoter ID: | MM_KWN:39985 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000044521, NM_146155, OTTMUST00000023490, OTTMUST00000023582, OTTMUST00000023585, OTTMUST00000023586, OTTMUST00000023588, OTTMUST00000023589, UC008VCC.1, UC008VCE.1 | ||||||||
Position: |
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RGD ID: | 6834784 | ||||||||
Promoter ID: | MM_KWN:39986 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | ES_Cell, Kidney, Liver, Lung | ||||||||
Transcripts: | ENSMUST00000105914 | ||||||||
Position: |
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RGD ID: | 6834785 | ||||||||
Promoter ID: | MM_KWN:39987 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Brain, Kidney, Lung, Spleen | ||||||||
Transcripts: | OTTMUST00000023587 | ||||||||
Position: |
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RGD ID: | 6884926 | ||||||||
Promoter ID: | EPDNEW_M5914 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Ahdc1_1 | ||||||||
Description: | Mus musculus AT hook, DNA binding motif, containing 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M5915 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6884928 | ||||||||
Promoter ID: | EPDNEW_M5915 | ||||||||
Type: | single initiation site | ||||||||
Name: | Ahdc1_2 | ||||||||
Description: | Mus musculus AT hook, DNA binding motif, containing 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M5914 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2444218 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000037692 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENSMUST00000044521.14 | UniProtKB/Swiss-Prot |
ENSMUST00000105914 | ENTREZGENE | |
ENSMUST00000105914.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000105915 | ENTREZGENE | |
ENSMUST00000105915.8 | UniProtKB/Swiss-Prot | |
ENSMUST00000105916 | ENTREZGENE | |
ENSMUST00000105916.8 | UniProtKB/Swiss-Prot | |
InterPro | AHDC1 | UniProtKB/Swiss-Prot |
DUF4683 | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:230793 | UniProtKB/Swiss-Prot |
MGD | MGI:2444218 | ENTREZGENE |
NCBI Gene | Ahdc1 | ENTREZGENE |
PANTHER | AT-HOOK DNA-BINDING MOTIF-CONTAINING PROTEIN 1 | UniProtKB/Swiss-Prot |
PTHR15617 | UniProtKB/Swiss-Prot | |
Pfam | DUF4683 | UniProtKB/Swiss-Prot |
PhenoGen | Ahdc1 | PhenoGen |
UniProt | AHDC1_MOUSE | UniProtKB/Swiss-Prot |
Q5U5N7 | ENTREZGENE | |
Q6PAL7 | ENTREZGENE | |
Q8C4Y6 | ENTREZGENE | |
Q8VCU7 | ENTREZGENE | |
UniProt Secondary | Q5U5N7 | UniProtKB/Swiss-Prot |
Q8C4Y6 | UniProtKB/Swiss-Prot | |
Q8VCU7 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2024-08-21 | Ahdc1 | AT hook, DNA binding motif, containing 1 | D030015G18Rik | RIKEN cDNA D030015G18 gene | Symbol and/or name change | 5135510 | APPROVED |
2024-08-21 | D030015G18Rik | RIKEN cDNA D030015G18 gene | Ahdc1 | AT hook, DNA binding motif, containing 1 | Symbol and/or name change | 5135510 | APPROVED |