Ahdc1 (AT-hook DNA binding motif containing 1) - Rat Genome Database

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Gene: Ahdc1 (AT-hook DNA binding motif containing 1) Chinchilla lanigera
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Symbol: Ahdc1
Name: AT-hook DNA binding motif containing 1
RGD ID: 8777430
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); promoter-enhancer loop anchoring activity (ortholog); INVOLVED IN mesoderm formation (ortholog); skin morphogenesis (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome 3 (ortholog); autism spectrum disorder (ortholog); cerebellar hypoplasia (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT hook, DNA binding motif, containing 1; AT-hook DNA-binding motif-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Ahdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBIChiLan1.0ChiLan1.0
AHDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,534,245 - 27,604,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,534,035 - 27,604,431 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,860,756 - 27,930,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,343 - 27,802,730 (-)NCBINCBI36Build 36hg18NCBI36
Celera126,256,416 - 26,325,804 (-)NCBICelera
Cytogenetic Map1p36.11-p35.3NCBI
HuRef126,116,832 - 26,186,603 (-)NCBIHuRef
CHM1_1127,976,151 - 28,045,538 (-)NCBICHM1_1
T2T-CHM13v2.0127,375,551 - 27,445,533 (-)NCBIT2T-CHM13v2.0
Ahdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,738,797 - 132,805,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,738,571 - 132,805,421 (+)EnsemblGRCm39 Ensembl
GRCm384133,011,265 - 133,078,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,011,260 - 133,078,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv374132,567,421 - 132,634,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,283,582 - 132,349,318 (+)NCBIMGSCv36mm8
Celera4131,174,218 - 131,241,080 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.18NCBI
Ahdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,512,182 - 150,578,804 (+)NCBIGRCr8
mRatBN7.25145,228,228 - 145,294,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,928,942 - 147,994,279 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,698,538 - 149,763,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,686,904 - 149,752,122 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,209,894 - 151,277,192 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,878,231 - 154,944,337 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,034,725 - 152,101,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,045,178 - 152,060,307 (-)NCBI
Celera5143,693,243 - 143,715,931 (+)NCBICelera
Cytogenetic Map5q36NCBI
AHDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,249,065 - 199,318,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,365,500 - 198,435,147 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,794,800 - 26,864,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,840,765 - 27,910,728 (-)NCBIpanpan1.1PanPan1.1panPan2
AHDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,711,626 - 72,762,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,747,701 - 72,752,605 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,303,131 - 69,340,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,287,205 - 73,324,243 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1270,113,571 - 70,150,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,124,865 - 71,162,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,132,417 - 72,158,579 (+)NCBIUU_Cfam_GSD_1.0
Ahdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,999,853 - 46,052,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,824,697 - 11,876,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,824,692 - 11,846,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,735,253 - 84,802,456 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,735,253 - 84,774,554 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,330,133 - 78,339,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AHDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,187,943 - 105,257,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,416,674 - 11,482,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,416,674 - 11,482,622 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020271   ⟹   ENSCLAP00000020078
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)Ensembl
RefSeq Acc Id: XM_005394910   ⟹   XP_005394967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,832,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394912   ⟹   XP_005394969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394914   ⟹   XP_005394971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,832,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394915   ⟹   XP_005394972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,803,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394916   ⟹   XP_005394973
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,805,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394917   ⟹   XP_005394974
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,803,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519581   ⟹   XP_013375035
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554526,767,250 - 6,832,868 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005394969   ⟸   XM_005394912
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394971   ⟸   XM_005394914
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394967   ⟸   XM_005394910
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394973   ⟸   XM_005394916
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394972   ⟸   XM_005394915
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394974   ⟸   XM_005394917
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375035   ⟸   XM_013519581
- UniProtKB: A0A8C2VSP3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020078   ⟸   ENSCLAT00000020271
Protein Domains
DUF4683


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013754 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020271 ENTREZGENE
  ENSCLAT00000020271.1 UniProtKB/TrEMBL
InterPro AHDC1 UniProtKB/TrEMBL
  DUF4683 UniProtKB/TrEMBL
NCBI Gene Ahdc1 ENTREZGENE
PANTHER AT-HOOK DNA-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15617 UniProtKB/TrEMBL
Pfam DUF4683 UniProtKB/TrEMBL
UniProt A0A8C2VSP3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ahdc1  AT-hook DNA binding motif containing 1    AT hook, DNA binding motif, containing 1  Symbol and/or name change 5135510 APPROVED