AHDC1 (AT-hook DNA binding motif containing 1) - Rat Genome Database

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Gene: AHDC1 (AT-hook DNA binding motif containing 1) Chlorocebus sabaeus
Analyze
Symbol: AHDC1
Name: AT-hook DNA binding motif containing 1
RGD ID: 18501135
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); promoter-enhancer loop anchoring activity (ortholog); INVOLVED IN mesoderm formation (ortholog); skin morphogenesis (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome 3 (ortholog); autism spectrum disorder (ortholog); cerebellar hypoplasia (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-hook DNA-binding motif-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,187,943 - 105,257,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
AHDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,187,943 - 105,257,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AHDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,534,245 - 27,604,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,534,035 - 27,604,431 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,860,756 - 27,930,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,343 - 27,802,730 (-)NCBINCBI36Build 36hg18NCBI36
Celera126,256,416 - 26,325,804 (-)NCBICelera
Cytogenetic Map1p36.11-p35.3NCBI
HuRef126,116,832 - 26,186,603 (-)NCBIHuRef
CHM1_1127,976,151 - 28,045,538 (-)NCBICHM1_1
T2T-CHM13v2.0127,375,551 - 27,445,533 (-)NCBIT2T-CHM13v2.0
Ahdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,738,797 - 132,805,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,738,571 - 132,805,421 (+)EnsemblGRCm39 Ensembl
GRCm384133,011,265 - 133,078,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,011,260 - 133,078,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv374132,567,421 - 132,634,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,283,582 - 132,349,318 (+)NCBIMGSCv36mm8
Celera4131,174,218 - 131,241,080 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.18NCBI
Ahdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,512,182 - 150,578,804 (+)NCBIGRCr8
mRatBN7.25145,228,228 - 145,294,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,228,227 - 145,294,145 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,928,942 - 147,994,279 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,698,538 - 149,763,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,686,904 - 149,752,122 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,209,894 - 151,277,192 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,211,342 - 151,277,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05154,878,231 - 154,944,337 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,034,725 - 152,101,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,045,178 - 152,060,307 (-)NCBI
Celera5143,693,243 - 143,715,931 (+)NCBICelera
Cytogenetic Map5q36NCBI
Ahdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,767,266 - 6,832,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,767,250 - 6,832,989 (-)NCBIChiLan1.0ChiLan1.0
AHDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,249,065 - 199,318,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,365,500 - 198,435,147 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,794,800 - 26,864,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,840,765 - 27,910,728 (-)NCBIpanpan1.1PanPan1.1panPan2
AHDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,711,626 - 72,762,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,747,701 - 72,752,605 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,303,131 - 69,340,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,287,205 - 73,324,243 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1270,113,571 - 70,150,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,124,865 - 71,162,066 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,132,417 - 72,158,579 (+)NCBIUU_Cfam_GSD_1.0
Ahdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,999,853 - 46,052,111 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,824,697 - 11,876,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,824,692 - 11,846,355 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1684,735,253 - 84,774,554 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,330,133 - 78,339,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ahdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,416,674 - 11,482,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,416,674 - 11,482,622 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 43
Low 18 17
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000017883   ⟹   ENSCSAP00000017354
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl20105,239,747 - 105,244,558 (+)Ensembl
RefSeq Acc Id: XM_007979820   ⟹   XP_007978011
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120105,187,943 - 105,257,767 (+)NCBI
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037985452   ⟹   XP_037841380
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,102 (-)NCBI
RefSeq Acc Id: XM_037985472   ⟹   XP_037841400
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,149 (-)NCBI
RefSeq Acc Id: XM_037985538   ⟹   XP_037841466
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,247,524 (-)NCBI
RefSeq Acc Id: XM_037985566   ⟹   XP_037841494
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,102 (-)NCBI
RefSeq Acc Id: XM_037985587   ⟹   XP_037841515
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,237,744 (-)NCBI
RefSeq Acc Id: XM_037985624   ⟹   XP_037841552
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,255,850 (-)NCBI
RefSeq Acc Id: XM_037985652   ⟹   XP_037841580
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,276,614 (-)NCBI
RefSeq Acc Id: XM_037985685   ⟹   XP_037841613
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,277,102 (-)NCBI
RefSeq Acc Id: XM_037985728   ⟹   XP_037841656
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603311,206,686 - 11,229,457 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007978011   ⟸   XM_007979820
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017354   ⟸   ENSCSAT00000017883
RefSeq Acc Id: XP_037841400   ⟸   XM_037985472
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841494   ⟸   XM_037985566
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841380   ⟸   XM_037985452
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841613   ⟸   XM_037985685
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841580   ⟸   XM_037985652
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841552   ⟸   XM_037985624
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841466   ⟸   XM_037985538
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841515   ⟸   XM_037985587
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841656   ⟸   XM_037985728
- UniProtKB: A0A0D9S915 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000652 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017883.1 UniProtKB/TrEMBL
InterPro AHDC1 UniProtKB/TrEMBL
  DUF4683 UniProtKB/TrEMBL
KEGG Report csab:103225284 UniProtKB/TrEMBL
NCBI Gene AHDC1 ENTREZGENE
PANTHER AT-HOOK DNA-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15617 UniProtKB/TrEMBL
Pfam DUF4683 UniProtKB/TrEMBL
UniProt A0A0D9S915 ENTREZGENE, UniProtKB/TrEMBL