Advanced Search (OLGA)

Gene: Tmem82 (transmembrane protein 82) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Tmem82

Name:

transmembrane protein 82

RGD ID:

1618181

MGI Page

MGI

Description:

Predicted to be located in membrane. Orthologous to human TMEM82 (transmembrane protein 82).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC37938; RP23-291H3.2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM82 (transmembrane protein 82)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Tmem82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM82 (transmembrane protein 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tmem82 (transmembrane protein 82)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM82 (transmembrane protein 82)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem82 (transmembrane protein 82)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	tmem82	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,341,544 - 141,345,944 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,340,687 - 141,345,944 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	141,614,233 - 141,618,633 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,613,376 - 141,618,633 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	141,170,148 - 141,174,548 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,886,309 - 140,890,709 (-)	NCBI		MGSCv36	mm8
Celera	4	143,437,059 - 143,441,459 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	74.64	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem82	Mouse	chromosome 1p36 deletion syndrome		ISO	TMEM82 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem82	Mouse	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of TMEM82 mRNA	CTD	PMID:39298647
Tmem82	Mouse	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	2 more ...	CTD	PMID:31826744
Tmem82	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of TMEM82 mRNA	CTD	PMID:21570461
Tmem82	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of TMEM82 mRNA	CTD	PMID:24780913
Tmem82	Mouse	6-propyl-2-thiouracil	multiple interactions	EXP		6480464	[Propylthiouracil co-treated with Iodine deficiency] results in increased expression of TMEM82 mRNA	CTD	PMID:36706583
Tmem82	Mouse	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of TMEM82 mRNA	CTD	PMID:19770486
Tmem82	Mouse	benzo[a]pyrene	multiple interactions	EXP		6480464	AHR protein affects the reaction [Benzo(a)pyrene affects the expression of TMEM82 mRNA]	CTD	PMID:22228805
Tmem82	Mouse	benzo[a]pyrene	decreases expression	ISO	TMEM82 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of TMEM82 mRNA	CTD	PMID:32234424
Tmem82	Mouse	benzo[a]pyrene	increases methylation	ISO	TMEM82 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of TMEM82 promoter	CTD	PMID:27901495
Tmem82	Mouse	benzo[b]fluoranthene	increases expression	EXP		6480464	benzo(b)fluoranthene results in increased expression of TMEM82 mRNA	CTD	PMID:26377693
Tmem82	Mouse	bisphenol A	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of TMEM82 mRNA	CTD	PMID:32145629
Tmem82	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TMEM82 mRNA	CTD	PMID:32156529
Tmem82	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TMEM82 mRNA	CTD	PMID:33221593 and PMID:34585602
Tmem82	Mouse	bisphenol F	decreases expression	EXP		6480464	bisphenol F results in decreased expression of TMEM82 mRNA	CTD	PMID:38685157
Tmem82	Mouse	cadmium atom	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of TMEM82 mRNA	CTD	PMID:37325564
Tmem82	Mouse	cadmium dichloride	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of TMEM82 mRNA	CTD	PMID:37325564
Tmem82	Mouse	carbon nanotube	increases expression	EXP		6480464	Nanotubes more ...	CTD	PMID:25554681 and PMID:25620056
Tmem82	Mouse	clofibrate	increases expression	EXP		6480464	Clofibrate results in increased expression of TMEM82 mRNA	CTD	PMID:23811191
Tmem82	Mouse	Cuprizon	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of TMEM82 mRNA	CTD	PMID:27523638
Tmem82	Mouse	diiodine	multiple interactions	EXP		6480464	[Propylthiouracil co-treated with Iodine deficiency] results in increased expression of TMEM82 mRNA	CTD	PMID:36706583
Tmem82	Mouse	dioxygen	multiple interactions	EXP		6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of TMEM82 mRNA	CTD	PMID:30529165
Tmem82	Mouse	finasteride	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	Finasteride results in increased expression of TMEM82 mRNA	CTD	PMID:24136188
Tmem82	Mouse	glycidol	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	glycidol results in increased expression of TMEM82 mRNA	CTD	PMID:24915197
Tmem82	Mouse	hydrogen cyanide	decreases expression	EXP		6480464	Hydrogen Cyanide results in decreased expression of TMEM82 mRNA	CTD	PMID:33914522
Tmem82	Mouse	leflunomide	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	leflunomide results in increased expression of TMEM82 mRNA	CTD	PMID:24136188
Tmem82	Mouse	methidathion	increases expression	EXP		6480464	methidathion results in increased expression of TMEM82 mRNA	CTD	PMID:34813904
Tmem82	Mouse	N-Nitrosopyrrolidine	decreases expression	ISO	TMEM82 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in decreased expression of TMEM82 mRNA	CTD	PMID:32234424
Tmem82	Mouse	O-methyleugenol	decreases expression	ISO	TMEM82 (Homo sapiens)	6480464	methyleugenol results in decreased expression of TMEM82 mRNA	CTD	PMID:32234424
Tmem82	Mouse	p-toluidine	decreases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	4-toluidine results in decreased expression of TMEM82 mRNA	CTD	PMID:27638505
Tmem82	Mouse	pirinixic acid	increases expression	EXP		6480464	pirinixic acid results in increased expression of TMEM82 mRNA	CTD	PMID:17426115 and PMID:23811191
Tmem82	Mouse	potassium cyanide	decreases expression	EXP		6480464	Potassium Cyanide results in decreased expression of TMEM82 mRNA	CTD	PMID:33914522
Tmem82	Mouse	tetraphene	increases expression	EXP		6480464	benz(a)anthracene results in increased expression of TMEM82 mRNA	CTD	PMID:26377693
Tmem82	Mouse	trichloroethene	increases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of TMEM82 mRNA	CTD	PMID:33387578
Tmem82	Mouse	troglitazone	increases expression	EXP		6480464	troglitazone results in increased expression of TMEM82 mRNA	CTD	PMID:28973697
Tmem82	Mouse	valproic acid	increases methylation	ISO	TMEM82 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of TMEM82 gene	CTD	PMID:29154799
Tmem82	Mouse	vinclozolin	decreases expression	ISO	Tmem82 (Rattus norvegicus)	6480464	vinclozolin results in decreased expression of TMEM82 mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem82	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem82	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015
Tmem82	Mouse	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem82	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068

Tmem82
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,341,544 - 141,345,944 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,340,687 - 141,345,944 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	141,614,233 - 141,618,633 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,613,376 - 141,618,633 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	141,170,148 - 141,174,548 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,886,309 - 140,890,709 (-)	NCBI		MGSCv36	mm8
Celera	4	143,437,059 - 143,441,459 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	74.64	NCBI

TMEM82
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	15,742,499 - 15,747,982 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	15,742,499 - 15,747,982 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	16,068,994 - 16,074,477 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	15,941,504 - 15,947,064 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	14,551,934 - 14,557,494 (+)	NCBI		Celera
Cytogenetic Map	1	p36.21	NCBI
HuRef	1	14,587,960 - 14,593,264 (+)	NCBI		HuRef
CHM1_1	1	15,867,585 - 15,872,886 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,187,236 - 15,192,722 (+)	NCBI		T2T-CHM13v2.0

Tmem82
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,210,531 - 159,214,462 (-)	NCBI		GRCr8
mRatBN7.2	5	153,927,486 - 153,931,942 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,927,471 - 153,936,979 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	160,170,617 - 160,175,118 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	160,170,833 - 160,174,698 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,885,058 - 163,889,580 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,514,351 - 160,518,279 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	152,283,591 - 152,288,117 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Tmem82
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	2,428,541 - 2,432,242 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	2,428,818 - 2,432,843 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM82
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	211,168,124 - 211,174,567 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	210,416,717 - 210,423,169 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	14,884,522 - 14,890,352 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	15,875,416 - 15,881,677 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	15,875,416 - 15,881,677 (+)	Ensembl	panpan1.1		panPan2

TMEM82
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,854,861 - 81,858,863 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,855,163 - 81,858,792 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	78,392,840 - 78,396,820 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,503,483 - 82,507,441 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,503,781 - 82,507,370 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	79,256,808 - 79,260,802 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	80,274,885 - 80,278,838 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	81,340,810 - 81,344,778 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	37,546,679 - 37,551,231 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,371,998 - 3,376,002 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,371,389 - 3,375,979 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM82
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	74,915,707 - 74,920,121 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	74,915,328 - 74,920,128 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,385,062 - 69,388,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM82
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	116,554,156 - 116,562,703 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	20,090,357 - 20,096,163 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in Tmem82
254 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 12p13.32-13.31(chr12:4832052-5947324)x3	copy number gain	See cases [RCV000051954]	Chr12:4832052..5947324 [GRCh38] Chr12:4941218..6056490 [GRCh37] Chr12:4811479..5926751 [NCBI36] Chr12:12p13.32-13.31	uncertain significance
GRCh38/hg38 12p13.33-11.22(chr12:121055-28415184)x1	copy number loss	See cases [RCV000052776]	Chr12:121055..28415184 [GRCh38] Chr12:282465..28568117 [GRCh37] Chr12:100482..28459384 [NCBI36] Chr12:12p13.33-11.22	pathogenic
GRCh38/hg38 12p13.33-12.1(chr12:80412-25470329)x3	copy number gain	See cases [RCV000053662]	Chr12:80412..25470329 [GRCh38] Chr12:282465..25623263 [GRCh37] Chr12:59839..25514530 [NCBI36] Chr12:12p13.33-12.1	pathogenic
GRCh38/hg38 12p13.33-13.31(chr12:121055-7272606)x3	copy number gain	See cases [RCV000053663]	Chr12:121055..7272606 [GRCh38] Chr12:282465..7425202 [GRCh37] Chr12:100482..7316469 [NCBI36] Chr12:12p13.33-13.31	pathogenic
GRCh38/hg38 12p13.33-13.31(chr12:121255-8361746)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053664]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053664]\|See cases [RCV000053664]	Chr12:121255..8361746 [GRCh38] Chr12:282465..8514342 [GRCh37] Chr12:100682..8405609 [NCBI36] Chr12:12p13.33-13.31	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4	copy number gain	See cases [RCV000053666]	Chr12:212976..33926913 [GRCh38] Chr12:322142..34079848 [GRCh37] Chr12:192403..33971115 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3	copy number gain	See cases [RCV000053660]	Chr12:77187..34380176 [GRCh38] Chr12:282465..34533111 [GRCh37] Chr12:56614..34424378 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.33-13.31(chr12:45740-6945196)x3	copy number gain	See cases [RCV000135350]	Chr12:45740..6945196 [GRCh38] Chr12:147099..7054359 [GRCh37] Chr12:17360..6924620 [NCBI36] Chr12:12p13.33-13.31	pathogenic
GRCh38/hg38 12p13.33-13.31(chr12:199896-5807366)x1	copy number loss	See cases [RCV000136848]	Chr12:199896..5807366 [GRCh38] Chr12:309062..5916532 [GRCh37] Chr12:179323..5786793 [NCBI36] Chr12:12p13.33-13.31	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3	copy number gain	See cases [RCV000136611]	Chr12:121255..34603274 [GRCh38] Chr12:282465..34756209 [GRCh37] Chr12:100682..34647476 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.33-12.3(chr12:2871741-14987348)x3	copy number gain	See cases [RCV000137694]	Chr12:2871741..14987348 [GRCh38] Chr12:2980907..15140282 [GRCh37] Chr12:2851168..15031549 [NCBI36] Chr12:12p13.33-12.3	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3	copy number gain	See cases [RCV000139052]	Chr12:121271..34603261 [GRCh38] Chr12:282465..34756196 [GRCh37] Chr12:100698..34647463 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3	copy number gain	See cases [RCV000139555]	Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4	copy number gain	See cases [RCV000139787]	Chr12:54427..34608071 [GRCh38] Chr12:282465..34761006 [GRCh37] Chr12:33854..34652273 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.31(chr12:5468308-5516206)x3	copy number gain	See cases [RCV000141169]	Chr12:5468308..5516206 [GRCh38] Chr12:5577474..5625372 [GRCh37] Chr12:5447735..5495633 [NCBI36] Chr12:12p13.31	uncertain significance
GRCh38/hg38 12p13.33-12.2(chr12:1258274-20657577)x3	copy number gain	See cases [RCV000141905]	Chr12:1258274..20657577 [GRCh38] Chr12:1367440..20810511 [GRCh37] Chr12:1237701..20701778 [NCBI36] Chr12:12p13.33-12.2	pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4	copy number gain	See cases [RCV000142149]	Chr12:64620..34682902 [GRCh38] Chr12:173786..34835837 [GRCh37] Chr12:44047..34727104 [NCBI36] Chr12:12p13.33-11.1	pathogenic
GRCh38/hg38 12p13.33-13.31(chr12:418421-6235914)x3	copy number gain	See cases [RCV000143357]	Chr12:418421..6235914 [GRCh38] Chr12:527587..6345080 [GRCh37] Chr12:397848..6215341 [NCBI36] Chr12:12p13.33-13.31	pathogenic
NM_001102654.2(NTF3):c.265G>A (p.Gly89Arg)	single nucleotide variant	Hirschsprung disease, susceptibility to, 1 [RCV000201299]	Chr12:5494440 [GRCh38] Chr12:5603606 [GRCh37] Chr12:12p13.31	uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:148034-34178799)x4	copy number gain	See cases [RCV000240164]	Chr12:148034..34178799 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3	copy number gain	See cases [RCV000258805]	Chr12:1..133851895 [GRCh37] Chr12:12p13.33-q24.33	pathogenic\|likely pathogenic
GRCh38/hg38 12p13.32-13.31(chr12:4772521-5854093)x1	copy number loss	Breast ductal adenocarcinoma [RCV000207062]	Chr12:4772521..5854093 [GRCh38] Chr12:4881687..5963259 [GRCh37] Chr12:12p13.32-13.31	uncertain significance
chr12:4920767-5603935 complex variant	complex	Breast ductal adenocarcinoma [RCV000207328]	Chr12:4920767..5603935 [GRCh37] Chr12:12p13.32-13.31	uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:89061-34178799)x3	copy number gain	See cases [RCV000240487]	Chr12:89061..34178799 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)x3	copy number gain	See cases [RCV000449191]	Chr12:173786..37869301 [GRCh37] Chr12:12p13.33-q11	pathogenic
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865)x3	copy number gain	See cases [RCV000449287]	Chr12:173786..25286865 [GRCh37] Chr12:12p13.33-12.1	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-6378954)x1	copy number loss	See cases [RCV000447106]	Chr12:173786..6378954 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3	copy number gain	See cases [RCV000447551]	Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.31(chr12:5578947-5603350)x3	copy number gain	See cases [RCV000446912]	Chr12:5578947..5603350 [GRCh37] Chr12:12p13.31	uncertain significance
GRCh37/hg19 12p13.33-13.31(chr12:173786-5737510)x1	copy number loss	See cases [RCV000446628]	Chr12:173786..5737510 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-12.2(chr12:173786-20026080)x3	copy number gain	See cases [RCV000446050]	Chr12:173786..20026080 [GRCh37] Chr12:12p13.33-12.2	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-8257049)x3	copy number gain	See cases [RCV000446749]	Chr12:173786..8257049 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:189578-34756150)	copy number gain	See cases [RCV000446017]	Chr12:189578..34756150 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3	copy number gain	See cases [RCV000510482]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)	copy number gain	See cases [RCV000511643]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:565369-34835837)x3	copy number gain	See cases [RCV000511580]	Chr12:565369..34835837 [GRCh37] Chr12:12p13.33-11.1	likely pathogenic
GRCh37/hg19 12p13.33-13.2(chr12:173786-11677456)x3	copy number gain	See cases [RCV000510853]	Chr12:173786..11677456 [GRCh37] Chr12:12p13.33-13.2	pathogenic
GRCh37/hg19 12p13.33-11.22(chr12:173786-28219229)x3	copy number gain	See cases [RCV000510961]	Chr12:173786..28219229 [GRCh37] Chr12:12p13.33-11.22	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x2,3	copy number gain	not provided [RCV000683478]	Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3	copy number gain	not provided [RCV000683479]	Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-6039841)x1	copy number loss	not provided [RCV000683475]	Chr12:173786..6039841 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:191242-8122785)x3	copy number gain	not provided [RCV000683477]	Chr12:191242..8122785 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-5952112)x1	copy number loss	not provided [RCV000683474]	Chr12:173786..5952112 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.32-13.31(chr12:4305058-6066141)x1	copy number loss	not provided [RCV000683465]	Chr12:4305058..6066141 [GRCh37] Chr12:12p13.32-13.31	likely pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-6201932)x1	copy number loss	not provided [RCV000683476]	Chr12:173786..6201932 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869107)x3	copy number gain	not provided [RCV000683480]	Chr12:173786..37869107 [GRCh37] Chr12:12p13.33-q11	pathogenic
NM_001102654.2(NTF3):c.266G>A (p.Gly89Glu)	single nucleotide variant	Aganglionic megacolon [RCV000736041]\|not provided [RCV004707408]	Chr12:5494441 [GRCh38] Chr12:5603607 [GRCh37] Chr12:12p13.31	benign\|likely benign
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3	copy number gain	not provided [RCV000750246]	Chr12:191619..133777645 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3	copy number gain	not provided [RCV000750253]	Chr12:621220..133779118 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-11.21(chr12:191619-31733044)x3	copy number gain	not provided [RCV000750245]	Chr12:191619..31733044 [GRCh37] Chr12:12p13.33-11.21	pathogenic
GRCh37/hg19 12p13.31(chr12:5550738-5690626)x3	copy number gain	not provided [RCV000750265]	Chr12:5550738..5690626 [GRCh37] Chr12:12p13.31	benign
GRCh37/hg19 12p13.31(chr12:5550738-5690885)x3	copy number gain	not provided [RCV000750266]	Chr12:5550738..5690885 [GRCh37] Chr12:12p13.31	benign
GRCh37/hg19 12p13.31(chr12:5577867-5626158)x3	copy number gain	not provided [RCV000750267]	Chr12:5577867..5626158 [GRCh37] Chr12:12p13.31	benign
NM_001102654.2(NTF3):c.585C>T (p.Gly195=)	single nucleotide variant	not provided [RCV000921748]	Chr12:5494760 [GRCh38] Chr12:5603926 [GRCh37] Chr12:12p13.31	benign
GRCh37/hg19 12p13.33-12.3(chr12:189216-15001420)	copy number gain	not provided [RCV000767817]	Chr12:189216..15001420 [GRCh37] Chr12:12p13.33-12.3	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:237588-8278292)	copy number gain	not provided [RCV000767818]	Chr12:237588..8278292 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:189216-8185497)	copy number gain	not provided [RCV000767819]	Chr12:189216..8185497 [GRCh37] Chr12:12p13.33-13.31	pathogenic
NM_001102654.2(NTF3):c.726A>G (p.Ser242=)	single nucleotide variant	not provided [RCV000965881]	Chr12:5494901 [GRCh38] Chr12:5604067 [GRCh37] Chr12:12p13.31	benign
NC_000012.12:g.(1_3750000)_(5250000_9000000)del	deletion	Tumoral calcinosis, hyperphosphatemic, familial, 1 [RCV000758697]	Chr12:3750000..5250000 [GRCh38] Chr12:12p13.33-13.31	pathogenic\|not provided
GRCh37/hg19 12p13.33-11.1(chr12:173786-34496628)x3	copy number gain	not provided [RCV000847209]	Chr12:173786..34496628 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-8393815)x3	copy number gain	not provided [RCV000846343]	Chr12:173786..8393815 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:173786-6346092)x1	copy number loss	not provided [RCV000847821]	Chr12:173786..6346092 [GRCh37] Chr12:12p13.33-13.31	pathogenic
NC_000012.11:g.(?_4368352)_(9027607_?)dup	duplication	Lymphoproliferative syndrome 2 [RCV003105682]	Chr12:4368352..9027607 [GRCh37] Chr12:12p13.32-13.31	uncertain significance
NM_001102654.2(NTF3):c.648C>T (p.Asn216=)	single nucleotide variant	not provided [RCV000961178]	Chr12:5494823 [GRCh38] Chr12:5603989 [GRCh37] Chr12:12p13.31	benign
GRCh37/hg19 12p13.33-q11(chr12:274676-37869301)x4	copy number gain	not provided [RCV001006470]	Chr12:274676..37869301 [GRCh37] Chr12:12p13.33-q11	pathogenic
NM_001102654.2(NTF3):c.309C>T (p.Thr103=)	single nucleotide variant	not provided [RCV000890515]	Chr12:5494484 [GRCh38] Chr12:5603650 [GRCh37] Chr12:12p13.31	benign
GRCh37/hg19 12p13.33-13.31(chr12:173787-8320544)x3	copy number gain	not provided [RCV002472514]	Chr12:173787..8320544 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-13.31(chr12:189145-7730395)x3	copy number gain	not provided [RCV001537906]	Chr12:189145..7730395 [GRCh37] Chr12:12p13.33-13.31	pathogenic
NC_000012.11:g.(?_4479509)_(6235003_?)dup	duplication	Episodic ataxia type 1 [RCV001294847]	Chr12:4479509..6235003 [GRCh37] Chr12:12p13.32-13.31	uncertain significance
GRCh37/hg19 12p13.33-13.31(chr12:146240-8330229)x3	copy number gain	Obesity [RCV001801197]	Chr12:146240..8330229 [GRCh37] Chr12:12p13.33-13.31	pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)	copy number gain	not specified [RCV002052958]	Chr12:173786..37869301 [GRCh37] Chr12:12p13.33-q11	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)	copy number gain	not specified [RCV002052957]	Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865)	copy number gain	not specified [RCV002052955]	Chr12:173786..25286865 [GRCh37] Chr12:12p13.33-12.1	pathogenic
NC_000012.11:g.(?_4481740)_(6076855_?)dup	duplication	not provided [RCV001944242]	Chr12:4481740..6076855 [GRCh37] Chr12:12p13.32-13.31	uncertain significance
NM_001102654.2(NTF3):c.389T>C (p.Leu130Ser)	single nucleotide variant	not specified [RCV004315316]	Chr12:5494564 [GRCh38] Chr12:5603730 [GRCh37] Chr12:12p13.31	uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:176047-34179852)x4	copy number gain	Pallister-Killian syndrome [RCV003154827]	Chr12:176047..34179852 [GRCh37] Chr12:12p13.33-11.1	pathogenic
NM_001102654.2(NTF3):c.397A>C (p.Met133Leu)	single nucleotide variant	not specified [RCV004105665]	Chr12:5494572 [GRCh38] Chr12:5603738 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.301A>G (p.Met101Val)	single nucleotide variant	not specified [RCV004222068]	Chr12:5494476 [GRCh38] Chr12:5603642 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.446G>A (p.Arg149Gln)	single nucleotide variant	not specified [RCV004102967]	Chr12:5494621 [GRCh38] Chr12:5603787 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.248G>A (p.Arg83Gln)	single nucleotide variant	not specified [RCV004188822]	Chr12:5494423 [GRCh38] Chr12:5603589 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.232A>G (p.Lys78Glu)	single nucleotide variant	not specified [RCV004166262]	Chr12:5494407 [GRCh38] Chr12:5603573 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.445C>G (p.Arg149Gly)	single nucleotide variant	not specified [RCV004265006]	Chr12:5494620 [GRCh38] Chr12:5603786 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.657G>A (p.Arg219=)	single nucleotide variant	not provided [RCV003396128]	Chr12:5494832 [GRCh38] Chr12:5603998 [GRCh37] Chr12:12p13.31	likely benign
NM_001102654.2(NTF3):c.628G>A (p.Glu210Lys)	single nucleotide variant	not specified [RCV004360170]	Chr12:5494803 [GRCh38] Chr12:5603969 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.365G>A (p.Ser122Asn)	single nucleotide variant	not specified [RCV004363059]	Chr12:5494540 [GRCh38] Chr12:5603706 [GRCh37] Chr12:12p13.31	uncertain significance
Single allele	duplication	not provided [RCV003448692]	Chr12:188053..34856694 [GRCh37] Chr12:12p13.33-11.1	pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835641)x3	copy number gain	not specified [RCV003986979]	Chr12:173786..34835641 [GRCh37] Chr12:12p13.33-11.1	pathogenic
NM_001102654.2(NTF3):c.257A>T (p.Glu86Val)	single nucleotide variant	not specified [RCV004495946]	Chr12:5494432 [GRCh38] Chr12:5603598 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.476G>T (p.Arg159Leu)	single nucleotide variant	not specified [RCV004495947]	Chr12:5494651 [GRCh38] Chr12:5603817 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.101T>C (p.Met34Thr)	single nucleotide variant	not specified [RCV004495949]	Chr12:5494276 [GRCh38] Chr12:5603442 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.191A>C (p.Gln64Pro)	single nucleotide variant	not specified [RCV004638776]	Chr12:5494366 [GRCh38] Chr12:5603532 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.640G>A (p.Val214Ile)	single nucleotide variant	not specified [RCV004652543]	Chr12:5494815 [GRCh38] Chr12:5603981 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.506G>A (p.Ser169Asn)	single nucleotide variant	not specified [RCV004840568]	Chr12:5494681 [GRCh38] Chr12:5603847 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.581C>T (p.Thr194Met)	single nucleotide variant	not specified [RCV004840569]	Chr12:5494756 [GRCh38] Chr12:5603922 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.413G>A (p.Gly138Asp)	single nucleotide variant	not specified [RCV004840570]	Chr12:5494588 [GRCh38] Chr12:5603754 [GRCh37] Chr12:12p13.31	uncertain significance
NM_001102654.2(NTF3):c.802G>A (p.Gly268Arg)	single nucleotide variant	not specified [RCV004840567]	Chr12:5494977 [GRCh38] Chr12:5604143 [GRCh37] Chr12:12p13.31	uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173787-34835837)x4	copy number gain	not provided [RCV004819308]	Chr12:173787..34835837 [GRCh37] Chr12:12p13.33-11.1	pathogenic

Predicted Target Of

	Summary Value
Count of predictions:	1082
Count of miRNA genes:	494
Interacting mature miRNAs:	607
Transcripts:	ENSMUST00000053263, ENSMUST00000143154, ENSMUST00000156246
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301267	Bcmd2_m	B cell maturation defect 2 (mouse)			Not determined		4	133154678	150789451	Mouse
4142139	Adip12_m	adiposity 12 (mouse)			Not determined		4	124621281	156860686	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112824389	146824389	Mouse
1301525	Lmb1_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		4	124264957	150676858	Mouse
14746982	Manh56_m	mandible shape 56 (mouse)					4	117815917	151815917	Mouse
12910797	Pwgrq4_m	pre-weaning growth rate QTL 4 (mouse)					4	105835310	141433838	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
12910794	Pwbwq8_m	post-weaning body weight QTL 8 (mouse)					4	105835310	141433838	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111009051	145009280	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107791564	141791756	Mouse
1302149	Tlsr2_m	thymic lymphoma suppressor region 2 (mouse)			Not determined		4	124264957	142230960	Mouse
12910813	Pwbwq4_m	pre-weaning body weight QTL 4 (mouse)					4	105835310	141433838	Mouse
1300874	Gasa2_m	gastritis type A susceptibility locus 2 (mouse)			Not determined		4	133010494	156860686	Mouse
27226757	Femd1_m	femur midshaft diameter 1, 5 week (mouse)					4	123993793	144326570	Mouse
12910808	Pwbwq9_m	post-weaning body weight QTL 9 (mouse)					4	105835310	141433838	Mouse
1300621	Tpnr1_m	thermal pain response 1 (mouse)			Not determined		4	125230872	156860686	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116154678	150154782	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300917	Gasa1_m	gastritis type A susceptibility locus 1 (mouse)			Not determined		4	124055093	142438020	Mouse
1300537	Ap3q_m	alcohol preference 3 QTL (mouse)			Not determined		4	134654451	156860686	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
10412210	Cypr6_m	cytokine production 6 (mouse)			Not determined		4	120617848	154617995	Mouse
1302078	Sluc21_m	susceptibility to lung cancer 21 (mouse)			Not determined		4	117401141	151401275	Mouse
10045620	Heal22_m	wound healing/regeneration 22 (mouse)			Not determined		4	125230872	156860686	Mouse
4142481	Gct1_m	granulosa cell tumorigenesis 1 (mouse)			Not determined		4	127784226	156860686	Mouse
4141065	Shali2_m	survival time to hyperoxic acute lung injury 2 (mouse)			Not determined			124055093	141572792	Mouse
13503348	Bntq18_m	bone traits QTL 18 (mouse)					4	120617848	154617995	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
4141184	Tb2r1_m	TGF-beta2 responsiveness 1 (mouse)			Not determined			137674005	150676858	Mouse
1300780	Cocrb16_m	cocaine related behavior 16 (mouse)			Not determined		4	138943725	156860686	Mouse
4142077	Ignpq2_m	IgA nephropathy QTL 2 (mouse)			Not determined		4	133676733	156860686	Mouse
4141180	Ssic1_m	susceptibility to small intestinal cancer 1 (mouse)			Not determined			120674005	154674151	Mouse
1301584	Lrdg2_m	light induced retinal degeneration 2 (mouse)			Not determined		4	129465811	151654550	Mouse
1302102	Bis1_m	beta-carboline-induced seizures 1 (mouse)			Not determined		4	119864433	153864536	Mouse
10043996	Gct5_m	granulosa cell tumorigenesis 5 (mouse)			Not determined		4	127784226	156860686	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
10043985	Stheal12_m	soft tissue heal 12 (mouse)			Not determined		4	121342649	155342753	Mouse
1357534	Cinda3_m	cytokine induced activation 3 (mouse)			Not determined		4	137617848	142289472	Mouse
1301982	Pltiq1_m	phospholipid transfer protein inducibility QTL 1 (mouse)			Not determined		4	124621281	156860686	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
1300803	Sluc6_m	susceptibility to lung cancer 6 (mouse)			Not determined		4	120674005	154674151	Mouse
4142061	Chlq16_m	circulating hormone level QTL 16 (mouse)			Not determined		4	121342649	155342753	Mouse
1300933	Cdcs9_m	cytokine deficiency colitis susceptibility 9 (mouse)			Not determined		4	125230872	156860686	Mouse
1300553	Athsq1_m	atherosclerosis susceptibility QTL 1 (mouse)			Not determined		4	137617848	151654550	Mouse
1301964	Bw8q2_m	body weight at 8 weeks QTL 2 (mouse)			Not determined		4	119864433	153864536	Mouse
1301452	Elsgp1_m	elevated serum gp70 1 (mouse)			Not determined		4	121342649	155342753	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108477692	142477692	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108477692	142477692	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108477692	142477692	Mouse
1301108	Scon2_m	sucrose consumption 2 (mouse)			Not determined		4	134654451	156860686	Mouse
1300858	Tafat_m	tally ho associated mesenteric fat pad weight (mouse)			Not determined		4	124621281	156860686	Mouse
10755531	Lymph3_m	lymphocyte differential 3 (mouse)					4	124553483	156860686	Mouse
11533916	Mts1_m	mammary tumor susceptibility 1 (mouse)					4	125289325	156860686	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111009051	145009280	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112523489	146523489	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112182386	146182386	Mouse

AI507597

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	141,615,305 - 141,615,386	UniSTS	GRCm38
MGSCv37	4	141,171,220 - 141,171,301	UniSTS	GRCm37
Celera	4	143,438,131 - 143,438,212	UniSTS
Cytogenetic Map	4	E1	UniSTS
Whitehead/MRC_RH	4	1868.82	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_145987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_151462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK085940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL670446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB798487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU961312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY720765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000053263 ⟹ ENSMUSP00000058412

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,341,544 - 141,345,549 (-)	Ensembl
GRCm38.p6 Ensembl	4	141,614,233 - 141,618,238 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000143154 ⟹ ENSMUSP00000120973

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,340,687 - 141,345,944 (-)	Ensembl
GRCm38.p6 Ensembl	4	141,613,376 - 141,618,633 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000156246

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,341,548 - 141,345,292 (-)	Ensembl
GRCm38.p6 Ensembl	4	141,614,237 - 141,617,981 (-)	Ensembl

RefSeq Acc Id:

NM_145987 ⟹ NP_666099

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	141,341,544 - 141,345,944 (-)	NCBI
GRCm38	4	141,614,233 - 141,618,633 (-)	NCBI
MGSCv37	4	141,170,148 - 141,174,548 (-)	RGD
Celera	4	143,437,059 - 143,441,459 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

TTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTTTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAT
TAAAGGTGTGCGCCACCACGCCCAGCTTCAACCTAAGTCTTAAGGGGATTCCAAACCCTTCTTTCCCTGTGGCTTGTAGAAGCTAAACTACTAATTTTCAGAAGCCCGAAGAGACAGAGCGCTGCGGG
GAGCAGCTCTGCTTTGGGAACTTGAGAGGGCCAAGTCACACTTCAGGTTGAGTGCGGGCCACACCTGAGAGGGGGAAGGCCAGGTGAGCTGGCCGAAGAGGGACTTCCGGAAGGCATGGTGGCCTTGA
AGTCTAGCGGGGACAGACCAGAACCAGTTAACTGCTTTGCCCTTGAGACCTGAATGGGAAGCCACCAGCAGCTGCGAGCTGACAGTGCCACTGAATCCAGCAACCTGGAAGATCTAAGGCAGCTGTCT
CCCCGGCCCCGCCCCCAGGCCTTTGACCCTTTCCTAGTCCCTCCCCTGTCCTCTAGAGACACCTTTGACCAGTGATATCATTGGGTTTGTCCCAGCGCGGACCCGGTCGGAGGCTGAGGGTTCCTGGA
GGCTGCCATGTTCTCCCTGCCTTCCCTCTCCTCCTGGCTCCCCAGCCTCCCTTCCTTTGAGTGGGGTTCCAGTCTCTTCGACAGCCTTCTGCAAGGCTTGATCGGGGCCCTTGGAGTCTCGGTTCTCA
ACAGTCTCCTGAAAGTTTATTTCTTCGTGGCCTGTGTCAATGACCCCCAGCGGCAGCCCCAAAAGCAGCGGCTGAGCGCGCAATGGGCCTCGTTGGAGATGCTGCATCTGGCTGGTCTGACCCTGTTC
CTGACCTTGATAGGGTCCCGGGTAGCCGCCCTCGTCGTCTTGGAGTTCTCGCTCCGGGCTGTGTCCACTCTGCTGTCTCTGGGCAAGGGTTCCGGGAACAAGGAAAGGCTCCAGCTTTTCCTGGTGTG
TCAGTTCTCCCTGGGCTGTGGGCTAAGCTGTGGCCTGAGCTTCCTCCAGGAAGGTGCCCCACACCGCTCCCTGAACCTGCTGCTGAGCCTGGGGCTGGCTGTACTCCTTGCCCTGGGTGCCCGGCGCC
TAACCCGCCACATCTGCAGCCTCTATGAACTGCACAGCAGCCAGCGCTACTGTGGGGTCTGCTTGGGCCTGCTGGCCAGCCAGCACGGCATGCCCAGGCTCCTGAGCCGCACTCTGACAGTGGCCTTT
GCTGTGAGTGATCTGGCGGCAGTGGCTCTCATCAACAAGGACTTCCTGAGCTCCTCAGAGGCCGTGCGATTCTGGACCCCGCTCACCATCTGTTACACACTGTTGGTCATCTACATGCAGGAGGAGCA
GTGGCAACATCGCTTCAGCCTACAGGGCCAGGTCCAGACGGTGCTGGTGCGCATGGGTGGCCTCTTCCTTCTGTTGATGACCGTGGGCCGCTGGCTGGATCTCCTGAGTATCTTTTTCTCCCTTTTGG
GTGAGCTGTGGTGCTTAGCCGGTATTCGCGCCTTAATCGACCTCTGCCAGATACAGGGCTTTCCACCCCAGAGGCCTACAGTAACAGCAGCAGTAACAGCAGAAGGAGAATCAGGATGGACAGATCCA
TGTGAGCCCCGGCCTTCCACACCTGCCCCAGCCAGGAGCGCGGTCCCCTCCTGACTCGCCCTGCGGAGGATGTGAAGTCAGTTTCAGGCCTGCGCGGCCTAACCAGCAAGGTCTTGACCACACGATGT
GGCCTGAAGACTGAGTGGCTGGTCCTCACCTAGACTTTTGGGCAGGCCATGGGGGGGCTCTGGAGAAAGGAGGTGGCCAGGGCTGGGGACCTAGAGAGGTGGGGACATGAAGGCCTCAGAGTGAATCC
CTCTCTCTTGGAGATGGACAGCGTCAGCAGACCCACTTTTCTTGGCTGGGCAAGAGGACAATTGTGACCTCAGAATGGCCCCTGCCCTCTGGCCACCCCTCCCCCACCTTGCTCTCGCCGAAGACAAT
AAAGGTGACTTTTCTCAA

hide sequence

RefSeq Acc Id:

NR_151462

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	141,341,544 - 141,345,944 (-)	NCBI
GRCm38	4	141,614,233 - 141,618,633 (-)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTTTGTGTAGCCCTGGCTATCCTGGAACTCAC
TCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCCAGCTTCAACCTAAGTCTTAAGGGGATTCCAAACCCTTCTTT
CCCTGTGGCTTGTAGAAGCTAAACTACTAATTTTCAGAAGCCCGAAGAGACAGAGCGCTGCGGGGAGCAGCTCTGCTTTGGGAACTTGAGAGGGCCAAGTCACACTTCAGGTTGAGTGCGGGCCACAC
CTGAGAGGGGGAAGGCCAGGTGAGCTGGCCGAAGAGGGACTTCCGGAAGGCATGGTGGCCTTGAAGTCTAGCGGGGACAGACCAGAACCAGTTAACTGCTTTGCCCTTGAGACCTGAATGGGAAGCCA
CCAGCAGCTGCGAGCTGACAGTGCCACTGAATCCAGCAACCTGGAAGATCTAAGGCAGCTGTCTCCCCGGCCCCGCCCCCAGGCCTTTGACCCTTTCCTAGTCCCTCCCCTGTCCTCTAGAGACACCT
TTGACCAGTGATATCATTGGGTTTGTCCCAGCGCGGACCCGGTCGGAGGCTGAGGGTTCCTGGAGGCTGCCATGTTCTCCCTGCCTTCCCTCTCCTCCTGGCTCCCCAGCCTCCCTTCCTTTGAGTGG
GGTTCCAGTCTCTTCGACAGCCTTCTGCAAGGCTTGATCGGGGCCCTTGGAGTCTCGGTTCTCAACAGTCTCCTGAAAGTTTATTTCTTCGTGGCCTGTGTCAATGACCCCCAGCGGCAGCCCCAAAA
GCAGCGGCTGAGCGCGCAATGGGCCTCGTTGGAGATGCTGCATCTGGCTGGTCTGACCCTGTTCCTGACCTTGATAGGGTCCCGGGTAGCCGCCCTCGTCGTCTTGGAGTTCTCGCTCCGGGCTGTGT
CCACTCTGCTGTCTCTGGGCAAGGGTTCCGGGAACAAGGAAAGGCTCCAGCTTTTCCTGGTGTGTCAGTTCTCCCTGGGCTGTGGGCTAAGCTGTGGCCTGAGCTTCCTCCAGGAAGGTGCCCCACAC
CGCTCCCTGAACCTGCTGCTGAGCCTGGGGCTGGCTGTACTCCTTGCCCTGGGTGCCCGGCGCCTAACCCGCCACATCTGCAGCCTCTATGAACTGCACAGCAGCCAGCGCTACTGTGGGGTCTGCTT
GGGCCTGCTGGCCAGCCAGCACGGCATGCCCAGGCTCCTGAGCCGCACTCTGACAGTGGCCTTTGCTGTGAGTGATCTGGCGGCAGTGGCTCTCATCAACAAGGACTTCCTGAGCTCCTCAGAGGCCG
TGCGATTCTGGACCCCGCTCACCATCTGTTACACACTGTTGGTCATCTACATGCAGGCCTACAGGGCCAGGTCCAGACGGTGCTGGTGCGCATGGGTGGCCTCTTCCTTCTGTTGATGACCGTGGGCC
GCTGGCTGGATCTCCTGAGTATCTTTTTCTCCCTTTTGGGTGAGCTGTGGTGCTTAGCCGGTATTCGCGCCTTAATCGACCTCTGCCAGATACAGGGCTTTCCACCCCAGAGGCCTACAGTAACAGCA
GCAGTAACAGCAGAAGGAGAATCAGGATGGACAGATCCATGTGAGCCCCGGCCTTCCACACCTGCCCCAGCCAGGAGCGCGGTCCCCTCCTGACTCGCCCTGCGGAGGATGTGAAGTCAGTTTCAGGC
CTGCGCGGCCTAACCAGCAAGGTCTTGACCACACGATGTGGCCTGAAGACTGAGTGGCTGGTCCTCACCTAGACTTTTGGGCAGGCCATGGGGGGGCTCTGGAGAAAGGAGGTGGCCAGGGCTGGGGA
CCTAGAGAGGTGGGGACATGAAGGCCTCAGAGTGAATCCCTCTCTCTTGGAGATGGACAGCGTCAGCAGACCCACTTTTCTTGGCTGGGCAAGAGGACAATTGTGACCTCAGAATGGCCCCTGCCCTC
TGGCCACCCCTCCCCCACCTTGCTCTCGCCGAAGACAATAAAGGTGACTTTTCTCAA

hide sequence


Protein RefSeqs	NP_666099	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH25833	(Get FASTA)	NCBI Sequence Viewer
	EDL13387	(Get FASTA)	NCBI Sequence Viewer
	EDL13388	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000058412
	ENSMUSP00000058412.9
GenBank Protein	Q8R115	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_666099 ⟸ NM_145987

- UniProtKB:

A2ADF5 (UniProtKB/Swiss-Prot), Q8R115 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MFSLPSLSSWLPSLPSFEWGSSLFDSLLQGLIGALGVSVLNSLLKVYFFVACVNDPQRQPQKQRLSAQWASLEMLHLAGLTLFLTLIGSRVAALVVLEFSLRAVSTLLSLGKGSGNKERLQLFLVCQF
SLGCGLSCGLSFLQEGAPHRSLNLLLSLGLAVLLALGARRLTRHICSLYELHSSQRYCGVCLGLLASQHGMPRLLSRTLTVAFAVSDLAAVALINKDFLSSSEAVRFWTPLTICYTLLVIYMQEEQWQ
HRFSLQGQVQTVLVRMGGLFLLLMTVGRWLDLLSIFFSLLGELWCLAGIRALIDLCQIQGFPPQRPTVTAAVTAEGESGWTDPCEPRPSTPAPARSAVPS

hide sequence

Ensembl Acc Id:

ENSMUSP00000120973 ⟸ ENSMUST00000143154

Ensembl Acc Id:

ENSMUSP00000058412 ⟸ ENSMUST00000053263

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8R115-F1-model_v2	AlphaFold	Q8R115	1-356	view protein structure

RGD ID:

6836543

Promoter ID:

MM_KWN:40499

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Liver

Transcripts:

NM_145987, OTTMUST00000024088, OTTMUST00000024089, OTTMUST00000024090, UC008VOW.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	141,173,826 - 141,175,092 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000043085	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000053263	ENTREZGENE
	ENSMUST00000053263.9	UniProtKB/Swiss-Prot
InterPro	TMEM82	UniProtKB/Swiss-Prot
KEGG Report	mmu:213989	UniProtKB/Swiss-Prot
MGD	MGI:2384869	ENTREZGENE
NCBI Gene	213989	ENTREZGENE
PANTHER	PTHR35257	UniProtKB/Swiss-Prot
	TRANSMEMBRANE PROTEIN 82	UniProtKB/Swiss-Prot
Pfam	TMEM82	UniProtKB/Swiss-Prot
PhenoGen	Tmem82	PhenoGen
UniProt	A2ADF5	ENTREZGENE
	F2Z3W9_MOUSE	UniProtKB/TrEMBL
	Q8R115	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A2ADF5	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar