Vwa5b1 (von Willebrand factor A domain containing 5B1) - Rat Genome Database

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Gene: Vwa5b1 (von Willebrand factor A domain containing 5B1) Mus musculus
Analyze
Symbol: Vwa5b1
Name: von Willebrand factor A domain containing 5B1
RGD ID: 1332265
MGI Page MGI
Description: Predicted to be located in extracellular region. Orthologous to human VWA5B1 (von Willebrand factor A domain containing 5B1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4931403E03Rik; RP23-418E20.1; von Willebrand factor A domain-containing protein 5B1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,291,540 - 138,363,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,292,671 - 138,363,195 (-)EnsemblGRCm39 Ensembl
GRCm384138,564,229 - 138,635,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,565,360 - 138,635,884 (-)EnsemblGRCm38mm10GRCm38
MGSCv374138,124,884 - 138,179,907 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,841,143 - 137,896,088 (-)NCBIMGSCv36mm8
Celera4140,354,597 - 140,411,167 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:30973865   PMID:32325033  


Genomics

Comparative Map Data
Vwa5b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,291,540 - 138,363,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,292,671 - 138,363,195 (-)EnsemblGRCm39 Ensembl
GRCm384138,564,229 - 138,635,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,565,360 - 138,635,884 (-)EnsemblGRCm38mm10GRCm38
MGSCv374138,124,884 - 138,179,907 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,841,143 - 137,896,088 (-)NCBIMGSCv36mm8
Celera4140,354,597 - 140,411,167 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.43NCBI
VWA5B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,290,875 - 20,359,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,290,875 - 20,359,518 (+)EnsemblGRCh38hg38GRCh38
GRCh37120,617,368 - 20,686,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,502,161 - 20,553,974 (+)NCBINCBI36Build 36hg18NCBI36
Celera118,940,501 - 19,004,478 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef118,863,080 - 18,927,066 (+)NCBIHuRef
CHM1_1120,727,079 - 20,791,049 (+)NCBICHM1_1
T2T-CHM13v2.0120,114,458 - 20,183,107 (+)NCBIT2T-CHM13v2.0
Vwa5b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,080,599 - 156,148,155 (-)NCBIGRCr8
mRatBN7.25150,792,959 - 150,864,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,797,322 - 150,852,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,494,374 - 153,549,184 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,268,668 - 155,323,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,250,696 - 155,305,339 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,003,505 - 157,060,553 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,002,826 - 157,059,508 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,746,306 - 160,801,686 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,374,009 - 157,428,939 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,357,084 - 157,452,371 (-)NCBI
Celera5149,187,008 - 149,241,686 (-)NCBICelera
Cytogenetic Map5q36NCBI
Vwa5b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955452882,051 - 938,333 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955452874,819 - 938,134 (+)NCBIChiLan1.0ChiLan1.0
VWA5B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,756,912 - 206,827,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11205,872,793 - 205,944,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,246,882 - 19,315,348 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,289,519 - 20,353,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,289,519 - 20,353,256 (+)Ensemblpanpan1.1panPan2
VWA5B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,525,507 - 78,582,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,528,654 - 78,593,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,039,081 - 75,096,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,091,703 - 79,148,807 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,094,798 - 79,160,087 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,911,018 - 75,968,050 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,922,662 - 76,973,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,994,518 - 78,045,378 (-)NCBIUU_Cfam_GSD_1.0
Vwa5b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,481,463 - 40,534,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364746,322,852 - 6,359,160 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364746,322,852 - 6,359,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA5B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,552,307 - 78,609,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,552,803 - 78,614,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2672,751,770 - 72,799,891 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VWA5B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120112,197,665 - 112,262,398 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20112,198,450 - 112,243,041 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660333,955,470 - 4,023,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa5b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247645,379,677 - 5,430,047 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247645,379,734 - 5,435,744 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vwa5b1
2932 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2651
Count of miRNA genes:872
Interacting mature miRNAs:1175
Transcripts:ENSMUST00000030533, ENSMUST00000105812, ENSMUST00000133319, ENSMUST00000137206, ENSMUST00000154312
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
12050091Shm2_msperm head morphology 2 (mouse)4136876000138342753Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
D4Mit170  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384138,615,338 - 138,615,442UniSTSGRCm38
MGSCv374138,171,253 - 138,171,357UniSTSGRCm37
Celera4140,401,152 - 140,401,256UniSTS
Celera4138,155,003 - 138,155,123UniSTS
Cytogenetic Map4D3UniSTS
cM Map466.6UniSTS
Whitehead Genetic469.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_029401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK016425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030533   ⟹   ENSMUSP00000030533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,292,671 - 138,351,323 (-)Ensembl
GRCm38.p6 Ensembl4138,565,360 - 138,624,012 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105812   ⟹   ENSMUSP00000101438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,308,941 - 138,363,195 (-)Ensembl
GRCm38.p6 Ensembl4138,581,630 - 138,635,884 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,327,455 - 138,334,310 (-)Ensembl
GRCm38.p6 Ensembl4138,600,144 - 138,606,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137206   ⟹   ENSMUSP00000122484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,298,357 - 138,308,394 (-)Ensembl
GRCm38.p6 Ensembl4138,571,046 - 138,581,083 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,321,651 - 138,333,841 (-)Ensembl
GRCm38.p6 Ensembl4138,594,340 - 138,606,530 (-)Ensembl
RefSeq Acc Id: NM_029401   ⟹   NP_083677
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,296,280 - 138,351,303 (-)NCBI
GRCm384138,568,969 - 138,623,992 (-)NCBI
MGSCv374138,124,884 - 138,179,907 (-)RGD
Celera4140,354,597 - 140,411,167 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539241   ⟹   XP_006539304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,363,303 (-)NCBI
GRCm384138,564,229 - 138,635,992 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539243   ⟹   XP_006539306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,356,031 (-)NCBI
GRCm384138,564,229 - 138,628,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539244   ⟹   XP_006539307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,349,784 (-)NCBI
GRCm384138,564,229 - 138,622,473 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539245   ⟹   XP_006539308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,363,303 (-)NCBI
GRCm384138,564,229 - 138,635,992 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250349   ⟹   XP_011248651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,347,718 (-)NCBI
GRCm384138,564,229 - 138,620,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320433   ⟹   XP_017175922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,363,247 (-)NCBI
GRCm384138,564,229 - 138,635,937 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164524   ⟹   XP_036020417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,291,540 - 138,363,279 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083677   ⟸   NM_029401
- Peptide Label: precursor
- UniProtKB: Q6PFX4 (UniProtKB/Swiss-Prot),   Q9CUE8 (UniProtKB/Swiss-Prot),   A9Z1V5 (UniProtKB/Swiss-Prot),   B1AZ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539308   ⟸   XM_006539245
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006539304   ⟸   XM_006539241
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006539306   ⟸   XM_006539243
- Peptide Label: isoform X2
- UniProtKB: Q6PFX4 (UniProtKB/Swiss-Prot),   Q9CUE8 (UniProtKB/Swiss-Prot),   A9Z1V5 (UniProtKB/Swiss-Prot),   B1AZ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539307   ⟸   XM_006539244
- Peptide Label: isoform X2
- UniProtKB: Q6PFX4 (UniProtKB/Swiss-Prot),   Q9CUE8 (UniProtKB/Swiss-Prot),   A9Z1V5 (UniProtKB/Swiss-Prot),   B1AZ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248651   ⟸   XM_011250349
- Peptide Label: isoform X2
- UniProtKB: Q6PFX4 (UniProtKB/Swiss-Prot),   Q9CUE8 (UniProtKB/Swiss-Prot),   A9Z1V5 (UniProtKB/Swiss-Prot),   B1AZ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175922   ⟸   XM_017320433
- Peptide Label: isoform X2
- UniProtKB: Q6PFX4 (UniProtKB/Swiss-Prot),   Q9CUE8 (UniProtKB/Swiss-Prot),   A9Z1V5 (UniProtKB/Swiss-Prot),   B1AZ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101438   ⟸   ENSMUST00000105812
RefSeq Acc Id: ENSMUSP00000122484   ⟸   ENSMUST00000137206
RefSeq Acc Id: ENSMUSP00000030533   ⟸   ENSMUST00000030533
RefSeq Acc Id: XP_036020417   ⟸   XM_036164524
- Peptide Label: isoform X4
Protein Domains
VIT   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A9Z1V5-F1-model_v2 AlphaFold A9Z1V5 1-1215 view protein structure

Promoters
RGD ID:6885192
Promoter ID:EPDNEW_M6047
Type:initiation region
Name:Vwa5b1_1
Description:Mus musculus von Willebrand factor A domain containing 5B1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384138,623,987 - 138,624,047EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922968 AgrOrtholog
Ensembl Genes ENSMUSG00000028753 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030533 ENTREZGENE
  ENSMUST00000030533.12 UniProtKB/Swiss-Prot
  ENSMUST00000105812.10 UniProtKB/TrEMBL
  ENSMUST00000137206.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro VIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75718 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1922968 ENTREZGENE
NCBI Gene 75718 ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam VIT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vwa5b1 PhenoGen
PROSITE VIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A9Z1V5 ENTREZGENE
  B1AZ81 ENTREZGENE, UniProtKB/TrEMBL
  E9Q709_MOUSE UniProtKB/TrEMBL
  F7D0T1_MOUSE UniProtKB/TrEMBL
  Q6PFX4 ENTREZGENE
  Q9CUE8 ENTREZGENE
  VW5B1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6PFX4 UniProtKB/Swiss-Prot
  Q9CUE8 UniProtKB/Swiss-Prot