Gene: Vwa5b1 (von Willebrand factor A domain containing 5B1) Heterocephalus glaber
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Symbol:
Vwa5b1
Name:
von Willebrand factor A domain containing 5B1
RGD ID:
18927999
Description:
ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); hyperprolinemia type 2 (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
von Willebrand factor A domain-containing protein 5B1
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Disease Annotations - ClinVar
References
Genomics
Comparative Map Data
Vwa5b1 (Heterocephalus glaber - naked mole-rat)
VWA5B1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 20,290,875 - 20,359,518 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 20,290,875 - 20,359,518 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 20,617,368 - 20,686,011 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 20,502,161 - 20,553,974 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 18,940,501 - 19,004,478 (+) NCBI Celera Cytogenetic Map 1 p36.12 NCBI HuRef 1 18,863,080 - 18,927,066 (+) NCBI HuRef CHM1_1 1 20,727,079 - 20,791,049 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 20,114,458 - 20,183,107 (+) NCBI T2T-CHM13v2.0
Vwa5b1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 138,291,540 - 138,363,303 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 138,292,671 - 138,363,195 (-) Ensembl GRCm39 Ensembl GRCm38 4 138,564,229 - 138,635,992 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 138,565,360 - 138,635,884 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 138,124,884 - 138,179,907 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 137,841,143 - 137,896,088 (-) NCBI MGSCv36 mm8 Celera 4 140,354,597 - 140,411,167 (-) NCBI Celera Cytogenetic Map 4 D3 NCBI cM Map 4 70.43 NCBI
Vwa5b1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 156,080,599 - 156,148,155 (-) NCBI GRCr8 mRatBN7.2 5 150,792,959 - 150,864,849 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 150,797,322 - 150,852,518 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 153,494,374 - 153,549,184 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 155,268,668 - 155,323,482 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 155,250,696 - 155,305,339 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 157,003,505 - 157,060,553 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 157,002,826 - 157,059,508 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 160,746,306 - 160,801,686 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 157,374,009 - 157,428,939 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 157,357,084 - 157,452,371 (-) NCBI Celera 5 149,187,008 - 149,241,686 (-) NCBI Celera Cytogenetic Map 5 q36 NCBI
Vwa5b1 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955452 882,051 - 938,333 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955452 874,819 - 938,134 (+) NCBI ChiLan1.0 ChiLan1.0
VWA5B1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 206,756,912 - 206,827,665 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 205,872,793 - 205,944,457 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 19,246,882 - 19,315,348 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 20,289,519 - 20,353,256 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 20,289,519 - 20,353,256 (+) Ensembl panpan1.1 panPan2
VWA5B1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 2 78,525,507 - 78,582,674 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 2 78,528,654 - 78,593,983 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 2 75,039,081 - 75,096,319 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 79,091,703 - 79,148,807 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 79,094,798 - 79,160,087 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 75,911,018 - 75,968,050 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 76,922,662 - 76,973,670 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 77,994,518 - 78,045,378 (-) NCBI UU_Cfam_GSD_1.0
Vwa5b1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 40,481,463 - 40,534,387 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936474 6,322,852 - 6,359,160 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936474 6,322,852 - 6,359,160 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
VWA5B1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 78,552,307 - 78,609,274 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 78,552,803 - 78,614,410 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 72,751,770 - 72,799,891 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
VWA5B1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 112,197,665 - 112,262,398 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 112,198,450 - 112,243,041 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666033 3,955,470 - 4,023,971 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Expression
Sequence
RefSeq Acc Id:
ENSHGLT00000016790 ⟹ ENSHGLP00000016620
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624764 5,379,677 - 5,430,047 (+) Ensembl
RefSeq Acc Id:
XM_004850459 ⟹ XP_004850516
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624764 5,380,257 - 5,433,881 (+) NCBI
RefSeq Acc Id:
XM_013074403 ⟹ XP_012929857
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624764 5,379,734 - 5,433,881 (+) NCBI
RefSeq Acc Id:
XM_021262959 ⟹ XP_021118618
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624764 5,395,312 - 5,427,940 (+) NCBI
RefSeq Acc Id:
XR_002396953
Type:
NON-CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624764 5,395,312 - 5,435,744 (+) NCBI
RefSeq Acc Id:
XP_012929857 ⟸ XM_013074403
- Peptide Label:
isoform X1
- UniProtKB:
G5C4W4 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004850516 ⟸ XM_004850459
- Peptide Label:
isoform X1
- UniProtKB:
G5C4W4 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_021118618 ⟸ XM_021262959
- Peptide Label:
isoform X2
- UniProtKB:
G5C4W4 (UniProtKB/TrEMBL)
RefSeq Acc Id:
ENSHGLP00000016620 ⟸ ENSHGLT00000016790
Additional Information