Mtf1 (metal response element binding transcription factor 1) - Rat Genome Database

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Gene: Mtf1 (metal response element binding transcription factor 1) Mus musculus
Analyze
Symbol: Mtf1
Name: metal response element binding transcription factor 1
RGD ID: 1319032
MGI Page MGI
Description: Enables DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone acetyltransferase binding activity. Involved in DNA-templated transcription and cellular response to zinc ion. Acts upstream of or within positive regulation of transcription by RNA polymerase II; response to cadmium ion; and response to oxidative stress. Located in cytoplasm and nucleus. Is expressed in several structures, including cardiovascular system; central nervous system; early conceptus; genitourinary system; and gut. Orthologous to human MTF1 (metal regulatory transcription factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: metal regulatory transcription factor 1; metal response element-binding transcription factor 1; metalloregulatory transcription factor; MRE-binding transcription factor; MTF-1; Thy; Thyls; transcription factor MTF-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 34136,271,267 - 36,284,160NCBI
GRCm394124,696,342 - 124,743,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,695,897 - 124,743,593 (+)EnsemblGRCm39 Ensembl
GRCm384124,802,549 - 124,849,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,802,104 - 124,849,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,479,793 - 124,527,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,304,876 - 124,349,954 (+)NCBIMGSCv36mm8
Celera4123,124,096 - 123,171,046 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mouseautism spectrum disorder  ISOMTF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
Mtf1MouseCharcot-Marie-Tooth disease dominant intermediate C  ISOMTF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate CClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mouseautistic disorder  ISOMTF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15446388

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of MTF1 mRNACTDPMID:22206623
Mtf1Mouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of MTF1 mRNACTDPMID:17942748
Mtf1Mouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of MTF1 mRNACTDPMID:25210133
Mtf1Mouse17beta-estradiol increases expressionISOMTF1 (Homo sapiens)6480464Estradiol results in increased expression of MTF1 mRNACTDPMID:31614463
Mtf1Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of MTF1 mRNACTDPMID:39298647
Mtf1Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of MTF1 mRNACTDPMID:24058054 more ...
Mtf1Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to MTF1 gene]CTDPMID:28213091
Mtf1Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of MTF1 mRNACTDPMID:21570461
Mtf1Mouse2,6-dinitrotoluene affects expressionISOMtf1 (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of MTF1 mRNACTDPMID:21346803
Mtf1Mouse2-(octylamino)-1-[4-(propan-2-ylthio)phenyl]-1-propanol multiple interactionsISOMTF1 (Homo sapiens)6480464MTF1 protein affects the reaction [Suloctidil results in increased expression of MT1M mRNA]CTDPMID:32661532
Mtf1Mouse2-tert-butylhydroquinone multiple interactionsEXP 6480464MTF1 protein affects the reaction [2-tert-butylhydroquinone results in increased expression of MT1 mRNA]CTDPMID:14998373
Mtf1Mouse4,4'-diaminodiphenylmethane decreases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in decreased expression of MTF1 mRNACTDPMID:18648102
Mtf1Mouse4,4'-sulfonyldiphenol increases activityISOMTF1 (Homo sapiens)6480464bisphenol S results in increased activity of MTF1 proteinCTDPMID:36534918
Mtf1Mouse4,4'-sulfonyldiphenol decreases expressionEXP 6480464bisphenol S results in decreased expression of MTF1 mRNACTDPMID:33297965
Mtf1Mouse4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of MTF1 mRNACTDPMID:39298647
Mtf1Mouse[2,8-bis(trifluoromethyl)quinolin-4-yl]-(2-piperidyl)methanol multiple interactionsISOMTF1 (Homo sapiens)6480464MTF1 protein affects the reaction [Mefloquine results in increased expression of HMOX1 mRNA] and MTF1 protein affects the reaction [Mefloquine results in increased expression of MT2A mRNA]CTDPMID:32661532
Mtf1Mouseacetamide decreases expressionISOMtf1 (Rattus norvegicus)6480464acetamide results in decreased expression of MTF1 mRNACTDPMID:31881176
Mtf1Mouseacrylamide increases expressionISOMtf1 (Rattus norvegicus)6480464Acrylamide results in increased expression of MTF1 mRNACTDPMID:28959563
Mtf1Mouseacrylamide increases expressionISOMTF1 (Homo sapiens)6480464Acrylamide results in increased expression of MTF1 mRNACTDPMID:32763439
Mtf1Mouseaflatoxin B1 increases methylationISOMTF1 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of MTF1 geneCTDPMID:27153756

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Biological Process
1 to 11 of 11 rows

  
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mousecytoplasm located_inIDA 2290270 PMID:24529376UniProtPMID:24529376
Mtf1Mousenucleoplasm located_inTAS 2290270 ReactomeReactome:R-MMU-5660470
Mtf1Mousenucleoplasm located_inISOUniProtKB:Q148722290270 GO_CentralGO_REF:0000119
Mtf1Mousenucleus located_inIDA 2290270 PMID:24529376UniProtPMID:24529376
Mtf1Mousenucleus located_inICGO:00037002290270 PMID:10952993MGIPMID:10952993
Mtf1Mousenucleus is_active_inIBAPANTHER:PTN001803442 more ...2290270 GO_CentralGO_REF:0000033

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mousecis-regulatory region sequence-specific DNA binding enablesISOUniProtKB:Q148722290270 GO_CentralGO_REF:0000119
Mtf1Mousecis-regulatory region sequence-specific DNA binding enablesIDA 2290270 PMID:10931824 more ...MGIPMID:10931824 more ...
Mtf1MouseDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOUniProtKB:Q148722290270 GO_CentralGO_REF:0000119
Mtf1MouseDNA-binding transcription activator activity, RNA polymerase II-specific enablesIBAPANTHER:PTN002715649 and UniProtKB:Q148722290270 GO_CentralGO_REF:0000033
Mtf1MouseDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q14872 and ensembl:ENSP000003621272290270 EnsemblGO_REF:0000107
Mtf1MouseDNA-binding transcription factor activity enablesIDA 2290270 PMID:10952993MGIPMID:10952993
Mtf1Mousehistone acetyltransferase binding enablesIPIPR:B2RWS62290270 PMID:18605988MGIPMID:18605988
Mtf1Mouseprotein binding enablesISOUniProtKB:Q9BXS59068941 PMID:16189514 and PMID:19060904IntActPMID:16189514 and PMID:19060904
Mtf1MouseRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIBAPANTHER:PTN001803442 more ...2290270 GO_CentralGO_REF:0000033
Mtf1MouseRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIDA 2290270 PMID:18605988MGIPMID:18605988
Mtf1MouseRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISOUniProtKB:Q148722290270 GO_CentralGO_REF:0000119
Mtf1Mousesequence-specific double-stranded DNA binding enablesISOUniProtKB:Q148722290270 GO_CentralGO_REF:0000119
Mtf1Mousezinc ion binding enablesIEAUniProtKB-KW:KW-08632290270 UniProtGO_REF:0000043
1 to 13 of 13 rows

1 to 20 of 29 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mtf1Mouseabnormal craniofacial morphology  IEA 5509061 MGI 
Mtf1Mouseabnormal embryo size  IEA 5509061 MGI 
Mtf1Mouseabnormal forebrain morphology  IEA 5509061 MGI 
Mtf1Mouseabnormal liver physiology  IAGP 5509061 MGIPMID:16221973
Mtf1Mouseabnormal retina morphology  IEA 5509061 MGI 
Mtf1Mouseabnormal xenobiotic pharmacokinetics  IAGP 5509061 MGIPMID:15226267
Mtf1Mouseanophthalmia  IEA 5509061 MGI 
Mtf1Mousedecreased circulating glucose level  IEA 5509061 MGI 
Mtf1Mousedecreased leukocyte cell number  IAGP 5509061 MGIPMID:15226267
Mtf1Mousedecreased lymphocyte cell number  IAGP 5509061 MGIPMID:15226267
Mtf1Mousedilated liver sinusoidal space  IAGP 5509061 MGIPMID:15226267
Mtf1Mouseembryonic growth retardation  IEA 5509061 MGI 
Mtf1Mousehepatic necrosis  IAGP 5509061 MGIPMID:9582278
Mtf1Mousehepatic necrosis  IAGP 5509061 MGIPMID:15226267
Mtf1Mouseincreased cellular sensitivity to alkylating agents  IAGP 5509061 MGIPMID:9582278
Mtf1Mouseincreased circulating aspartate transaminase level  IEA 5509061 MGI 
Mtf1Mouseincreased circulating potassium level  IEA 5509061 MGI 
Mtf1Mouseincreased incidence of tumors by ionizing radiation induction  IAGP 5509061 MGIPMID:11526516
Mtf1Mouseincreased incidence of tumors by ionizing radiation induction  IAGP 5509061 MGIPMID:12901790
Mtf1Mouseincreased physiological sensitivity to xenobiotic  IAGP 5509061 MGIPMID:15226267
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#
Reference Title
Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:7610056   PMID:8026472   PMID:8467794   PMID:8619126   PMID:8824273   PMID:8889548   PMID:9111349   PMID:9582278   PMID:10349636   PMID:10430037   PMID:10922068   PMID:10931824  
PMID:10952993   PMID:11042159   PMID:11076861   PMID:11230134   PMID:11526516   PMID:12477932   PMID:12520002   PMID:12764133   PMID:12901790   PMID:14610273   PMID:15122909   PMID:15226267  
PMID:15284217   PMID:15516976   PMID:15782199   PMID:16055450   PMID:16093251   PMID:16141072   PMID:16141073   PMID:16216223   PMID:16221973   PMID:16847313   PMID:16886906   PMID:17015433  
PMID:17210131   PMID:17704327   PMID:17967808   PMID:18230604   PMID:18287559   PMID:18337454   PMID:18458062   PMID:18605988   PMID:18799693   PMID:19797083   PMID:19913599   PMID:20059953  
PMID:20211142   PMID:20383712   PMID:20412781   PMID:20688958   PMID:21035574   PMID:21267068   PMID:21677750   PMID:21738690   PMID:21873635   PMID:21883094   PMID:22021037   PMID:22087877  
PMID:22362755   PMID:22988430   PMID:23347955   PMID:23716681   PMID:24194600   PMID:24529376   PMID:24633789   PMID:26241779   PMID:26498180   PMID:27626380   PMID:32554809   PMID:36737727  
PMID:38355793  



Mtf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 34136,271,267 - 36,284,160NCBI
GRCm394124,696,342 - 124,743,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,695,897 - 124,743,593 (+)EnsemblGRCm39 Ensembl
GRCm384124,802,549 - 124,849,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,802,104 - 124,849,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,479,793 - 124,527,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,304,876 - 124,349,954 (+)NCBIMGSCv36mm8
Celera4123,124,096 - 123,171,046 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.91NCBI
MTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,809,574 - 37,859,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,809,574 - 37,859,592 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,275,246 - 38,325,264 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36138,047,826 - 38,097,879 (-)NCBINCBI36Build 36hg18NCBI36
Build 34137,948,943 - 37,994,324NCBI
Celera136,553,063 - 36,603,115 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,393,522 - 36,443,287 (-)NCBIHuRef
CHM1_1138,391,063 - 38,441,086 (-)NCBICHM1_1
T2T-CHM13v2.0137,676,462 - 37,726,477 (-)NCBIT2T-CHM13v2.0
Mtf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,347,024 - 142,391,810 (+)NCBIGRCr8
mRatBN7.25137,062,319 - 137,107,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,062,376 - 137,107,136 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,767,233 - 139,812,075 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,537,246 - 141,582,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,544,424 - 141,589,269 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,797,340 - 142,843,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,797,366 - 142,842,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,332,607 - 142,376,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,567,984 - 146,614,540 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,135,674 - 144,180,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,145,451 - 144,187,287 (+)NCBI
Celera5135,585,105 - 135,629,881 (+)NCBICelera
Cytogenetic Map5q36NCBI
Mtf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,580,460 - 15,627,844 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,580,460 - 15,627,844 (-)NCBIChiLan1.0ChiLan1.0
MTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,977,327 - 189,027,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,106,469 - 188,152,667 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,088,744 - 37,134,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,432,716 - 38,482,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,438,294 - 38,482,142 (-)Ensemblpanpan1.1panPan2
MTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,679,945 - 4,723,111 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,680,372 - 4,717,561 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha154,921,849 - 4,965,016 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,808,453 - 4,851,650 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,808,870 - 4,846,324 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,668,306 - 4,711,440 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,734,863 - 4,777,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,751,184 - 4,794,296 (+)NCBIUU_Cfam_GSD_1.0
Mtf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,160,425 - 54,202,806 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,981,466 - 20,027,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,981,483 - 20,027,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,839,205 - 93,884,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,837,195 - 93,884,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2686,652,512 - 86,655,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,002,623 - 95,052,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,003,504 - 95,046,718 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,758,719 - 21,810,019 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,515,307 - 20,557,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,510,925 - 20,557,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Mtf1
2673 total Variants

Predicted Target Of
Summary Value
Count of predictions:5139
Count of miRNA genes:890
Interacting mature miRNAs:1271
Transcripts:ENSMUST00000030723, ENSMUST00000106193, ENSMUST00000138807, ENSMUST00000147452, ENSMUST00000175875
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 70 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse

1 to 10 of 70 rows
AW260155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,801,155 - 124,801,260UniSTSGRCm38
MGSCv374124,478,399 - 124,478,504UniSTSGRCm37
Celera4123,122,702 - 123,122,807UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4D2UniSTS
cM Map458.3UniSTS
cM Map456.0UniSTS
Whitehead/MRC_RH41610.98UniSTS
AF040094  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,801,331 - 124,801,415UniSTSGRCm38
MGSCv374124,478,575 - 124,478,659UniSTSGRCm37
Celera4123,122,878 - 123,122,962UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4D2UniSTS
cM Map458.3UniSTS
cM Map456.0UniSTS
Whitehead/MRC_RH41610.41UniSTS
D4Mit12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,371,164 - 124,371,360UniSTSGRCm38
MGSCv374124,048,407 - 124,048,603UniSTSGRCm37
Celera4122,696,921 - 122,697,085UniSTS
Cytogenetic Map4D1UniSTS
cM Map457.6UniSTS
Whitehead Genetic454.6UniSTS
Whitehead_YAC4 UniSTS






1 to 22 of 22 rows
RefSeq Transcripts NM_008636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ251880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF354134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK380917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV658365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENSMUST00000030723   ⟹   ENSMUSP00000030723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,342 - 124,743,593 (+)Ensembl
GRCm38.p6 Ensembl4124,802,549 - 124,849,800 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106193   ⟹   ENSMUSP00000101799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,695,897 - 124,743,172 (+)Ensembl
GRCm38.p6 Ensembl4124,802,104 - 124,849,379 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138807   ⟹   ENSMUSP00000119352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,342 - 124,714,020 (+)Ensembl
GRCm38.p6 Ensembl4124,802,549 - 124,820,227 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,375 - 124,699,171 (+)Ensembl
GRCm38.p6 Ensembl4124,802,582 - 124,805,378 (+)Ensembl
Ensembl Acc Id: ENSMUST00000175875   ⟹   ENSMUSP00000135260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,471 - 124,698,533 (+)Ensembl
GRCm38.p6 Ensembl4124,802,678 - 124,804,740 (+)Ensembl
RefSeq Acc Id: NM_008636   ⟹   NP_032662
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394124,696,342 - 124,743,593 (+)NCBI
GRCm384124,802,549 - 124,849,800 (+)NCBI
MGSCv374124,479,793 - 124,527,044 (+)RGD
Celera4123,124,096 - 123,171,046 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032662   ⟸   NM_008636
- UniProtKB: Q9JJW8 (UniProtKB/Swiss-Prot),   Q07243 (UniProtKB/Swiss-Prot),   Q8BSY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119352   ⟸   ENSMUST00000138807
Ensembl Acc Id: ENSMUSP00000101799   ⟸   ENSMUST00000106193
Ensembl Acc Id: ENSMUSP00000030723   ⟸   ENSMUST00000030723
Ensembl Acc Id: ENSMUSP00000135260   ⟸   ENSMUST00000175875
C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q07243-F1-model_v2 AlphaFold Q07243 1-675 view protein structure

RGD ID:6835711
Promoter ID:MM_KWN:39575
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106193,   NM_008636,   OTTMUST00000020736,   UC008URA.1,   UC008URC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364124,479,399 - 124,479,899 (+)MPROMDB
RGD ID:6884590
Promoter ID:EPDNEW_M5746
Type:multiple initiation site
Name:Mtf1_1
Description:Mus musculus metal response element binding transcription factor1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384124,802,582 - 124,802,642EPDNEW


1 to 30 of 30 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000028890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030723 ENTREZGENE
  ENSMUST00000030723.3 UniProtKB/Swiss-Prot
  ENSMUST00000106193.8 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro Zinc_finger_trans_reg UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report mmu:17764 UniProtKB/Swiss-Prot
MGD MGI:101786 ENTREZGENE
NCBI Gene 17764 ENTREZGENE
PANTHER METAL RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR-1, ISOFORM C UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Mtf1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A0A0G2JDC6_MOUSE UniProtKB/TrEMBL
  B1ARW6_MOUSE UniProtKB/TrEMBL
  MTF1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80W60_MOUSE UniProtKB/TrEMBL
  Q80W61_MOUSE UniProtKB/TrEMBL
  Q80W62_MOUSE UniProtKB/TrEMBL
  Q80W63_MOUSE UniProtKB/TrEMBL
  Q8BSY2 ENTREZGENE, UniProtKB/TrEMBL
  Q9CZF3_MOUSE UniProtKB/TrEMBL
  Q9JJW8 ENTREZGENE
UniProt Secondary Q9JJW8 UniProtKB/Swiss-Prot
1 to 30 of 30 rows