Mtf1 (metal response element binding transcription factor 1) - Rat Genome Database

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Gene: Mtf1 (metal response element binding transcription factor 1) Mus musculus
Analyze
Symbol: Mtf1
Name: metal response element binding transcription factor 1
RGD ID: 1319032
MGI Page MGI
Description: Enables DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone acetyltransferase binding activity. Involved in DNA-templated transcription and cellular response to zinc ion. Acts upstream of or within positive regulation of transcription by RNA polymerase II; response to cadmium ion; and response to oxidative stress. Located in cytoplasm and nucleus. Is expressed in several structures, including cardiovascular system; central nervous system; early conceptus; genitourinary system; and gut. Orthologous to human MTF1 (metal regulatory transcription factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: metal regulatory transcription factor 1; metal response element-binding transcription factor 1; metalloregulatory transcription factor; MRE-binding transcription factor; MTF-1; Thy; Thyls; transcription factor MTF-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 34136,271,267 - 36,284,160NCBI
GRCm394124,696,342 - 124,743,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,695,897 - 124,743,593 (+)EnsemblGRCm39 Ensembl
GRCm384124,802,549 - 124,849,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,802,104 - 124,849,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,479,793 - 124,527,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,304,876 - 124,349,954 (+)NCBIMGSCv36mm8
Celera4123,124,096 - 123,171,046 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (ISO)
2-(octylamino)-1-[4-(propan-2-ylthio)phenyl]-1-propanol  (ISO)
2-tert-butylhydroquinone  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
[2,8-bis(trifluoromethyl)quinolin-4-yl]-(2-piperidyl)methanol  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldosterone  (ISO)
alexidine  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
aluminium sulfate (anhydrous)  (ISO)
amiodarone  (ISO)
amlodipine  (ISO)
arsenic trichloride  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
astemizole  (ISO)
bathocuproine disulfonic acid  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
busulfan  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (EXP)
cerium  (ISO)
chromium(6+)  (EXP,ISO)
cisplatin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP,ISO)
CU-O LINKAGE  (ISO)
cycloheximide  (EXP)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
disulfiram  (ISO)
elemental selenium  (ISO)
ferroheme b  (EXP)
flutamide  (ISO)
formaldehyde  (ISO)
gallium nitrate  (ISO)
gentamycin  (ISO)
glutathione  (EXP,ISO)
heme b  (EXP)
hydrogen peroxide  (EXP)
inulin  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (EXP)
mefloquine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
metam  (EXP)
methylmercury chloride  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP,ISO)
nickel atom  (ISO)
nickel sulfate  (EXP,ISO)
nitroprusside  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylarsine oxide  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
S-nitroso-N-acetyl-D-penicillamine  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
spironolactone  (ISO)
succimer  (ISO)
TCEP  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (ISO)
thiostrepton  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP,ISO)
zinc pyrithione  (EXP)
zinc sulfate  (EXP,ISO)
zinc(0)  (EXP,ISO)

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7610056   PMID:8026472   PMID:8467794   PMID:8619126   PMID:8824273   PMID:8889548   PMID:9111349   PMID:9582278   PMID:10349636   PMID:10430037   PMID:10922068   PMID:10931824  
PMID:10952993   PMID:11042159   PMID:11076861   PMID:11230134   PMID:11526516   PMID:12477932   PMID:12520002   PMID:12764133   PMID:12901790   PMID:14610273   PMID:15122909   PMID:15226267  
PMID:15284217   PMID:15516976   PMID:15782199   PMID:16055450   PMID:16093251   PMID:16141072   PMID:16141073   PMID:16216223   PMID:16221973   PMID:16847313   PMID:16886906   PMID:17015433  
PMID:17210131   PMID:17704327   PMID:17967808   PMID:18230604   PMID:18287559   PMID:18337454   PMID:18458062   PMID:18605988   PMID:18799693   PMID:19797083   PMID:19913599   PMID:20059953  
PMID:20211142   PMID:20383712   PMID:20412781   PMID:20688958   PMID:21035574   PMID:21267068   PMID:21677750   PMID:21738690   PMID:21873635   PMID:21883094   PMID:22021037   PMID:22087877  
PMID:22362755   PMID:22988430   PMID:23347955   PMID:23716681   PMID:24194600   PMID:24529376   PMID:24633789   PMID:26241779   PMID:26498180   PMID:27626380   PMID:32554809   PMID:36737727  
PMID:38355793  


Genomics

Comparative Map Data
Mtf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 34136,271,267 - 36,284,160NCBI
GRCm394124,696,342 - 124,743,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,695,897 - 124,743,593 (+)EnsemblGRCm39 Ensembl
GRCm384124,802,549 - 124,849,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,802,104 - 124,849,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,479,793 - 124,527,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,304,876 - 124,349,954 (+)NCBIMGSCv36mm8
Celera4123,124,096 - 123,171,046 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.91NCBI
MTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,809,574 - 37,859,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,809,574 - 37,859,592 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,275,246 - 38,325,264 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36138,047,826 - 38,097,879 (-)NCBINCBI36Build 36hg18NCBI36
Build 34137,948,943 - 37,994,324NCBI
Celera136,553,063 - 36,603,115 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,393,522 - 36,443,287 (-)NCBIHuRef
CHM1_1138,391,063 - 38,441,086 (-)NCBICHM1_1
T2T-CHM13v2.0137,676,462 - 37,726,477 (-)NCBIT2T-CHM13v2.0
Mtf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,347,024 - 142,391,810 (+)NCBIGRCr8
mRatBN7.25137,062,319 - 137,107,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,062,376 - 137,107,136 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,767,233 - 139,812,075 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,537,246 - 141,582,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,544,424 - 141,589,269 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,797,340 - 142,843,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,797,366 - 142,842,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,332,607 - 142,376,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,567,984 - 146,614,540 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,135,674 - 144,180,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,145,451 - 144,187,287 (+)NCBI
Celera5135,585,105 - 135,629,881 (+)NCBICelera
Cytogenetic Map5q36NCBI
Mtf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,580,460 - 15,627,844 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,580,460 - 15,627,844 (-)NCBIChiLan1.0ChiLan1.0
MTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,977,327 - 189,027,954 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,106,469 - 188,152,667 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,088,744 - 37,134,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,432,716 - 38,482,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,438,294 - 38,482,142 (-)Ensemblpanpan1.1panPan2
MTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,679,945 - 4,723,111 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,680,372 - 4,717,561 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha154,921,849 - 4,965,016 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,808,453 - 4,851,650 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,808,870 - 4,846,324 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,668,306 - 4,711,440 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,734,863 - 4,777,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,751,184 - 4,794,296 (+)NCBIUU_Cfam_GSD_1.0
Mtf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,160,425 - 54,202,806 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,981,466 - 20,027,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,981,483 - 20,027,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,839,205 - 93,884,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,837,195 - 93,884,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2686,652,512 - 86,655,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,002,623 - 95,052,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,003,504 - 95,046,718 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,758,719 - 21,810,019 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,515,307 - 20,557,105 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,510,925 - 20,557,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5139
Count of miRNA genes:890
Interacting mature miRNAs:1271
Transcripts:ENSMUST00000030723, ENSMUST00000106193, ENSMUST00000138807, ENSMUST00000147452, ENSMUST00000175875
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse

Markers in Region
AW260155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,801,155 - 124,801,260UniSTSGRCm38
MGSCv374124,478,399 - 124,478,504UniSTSGRCm37
Celera4123,122,702 - 123,122,807UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4D2UniSTS
cM Map458.3UniSTS
cM Map456.0UniSTS
Whitehead/MRC_RH41610.98UniSTS
AF040094  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,801,331 - 124,801,415UniSTSGRCm38
MGSCv374124,478,575 - 124,478,659UniSTSGRCm37
Celera4123,122,878 - 123,122,962UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4D2UniSTS
cM Map458.3UniSTS
cM Map456.0UniSTS
Whitehead/MRC_RH41610.41UniSTS
D4Mit12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,371,164 - 124,371,360UniSTSGRCm38
MGSCv374124,048,407 - 124,048,603UniSTSGRCm37
Celera4122,696,921 - 122,697,085UniSTS
Cytogenetic Map4D1UniSTS
cM Map457.6UniSTS
Whitehead Genetic454.6UniSTS
Whitehead_YAC4 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ251880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY260852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF354134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK380917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV658365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030723   ⟹   ENSMUSP00000030723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,342 - 124,743,593 (+)Ensembl
GRCm38.p6 Ensembl4124,802,549 - 124,849,800 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106193   ⟹   ENSMUSP00000101799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,695,897 - 124,743,172 (+)Ensembl
GRCm38.p6 Ensembl4124,802,104 - 124,849,379 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138807   ⟹   ENSMUSP00000119352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,342 - 124,714,020 (+)Ensembl
GRCm38.p6 Ensembl4124,802,549 - 124,820,227 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,375 - 124,699,171 (+)Ensembl
GRCm38.p6 Ensembl4124,802,582 - 124,805,378 (+)Ensembl
Ensembl Acc Id: ENSMUST00000175875   ⟹   ENSMUSP00000135260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,696,471 - 124,698,533 (+)Ensembl
GRCm38.p6 Ensembl4124,802,678 - 124,804,740 (+)Ensembl
RefSeq Acc Id: NM_008636   ⟹   NP_032662
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394124,696,342 - 124,743,593 (+)NCBI
GRCm384124,802,549 - 124,849,800 (+)NCBI
MGSCv374124,479,793 - 124,527,044 (+)RGD
Celera4123,124,096 - 123,171,046 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032662   ⟸   NM_008636
- UniProtKB: Q9JJW8 (UniProtKB/Swiss-Prot),   Q07243 (UniProtKB/Swiss-Prot),   Q8BSY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119352   ⟸   ENSMUST00000138807
Ensembl Acc Id: ENSMUSP00000101799   ⟸   ENSMUST00000106193
Ensembl Acc Id: ENSMUSP00000030723   ⟸   ENSMUST00000030723
Ensembl Acc Id: ENSMUSP00000135260   ⟸   ENSMUST00000175875
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07243-F1-model_v2 AlphaFold Q07243 1-675 view protein structure

Promoters
RGD ID:6835711
Promoter ID:MM_KWN:39575
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106193,   NM_008636,   OTTMUST00000020736,   UC008URA.1,   UC008URC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364124,479,399 - 124,479,899 (+)MPROMDB
RGD ID:6884590
Promoter ID:EPDNEW_M5746
Type:multiple initiation site
Name:Mtf1_1
Description:Mus musculus metal response element binding transcription factor1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384124,802,582 - 124,802,642EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101786 AgrOrtholog
Ensembl Genes ENSMUSG00000028890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030723 ENTREZGENE
  ENSMUST00000030723.3 UniProtKB/Swiss-Prot
  ENSMUST00000106193.8 UniProtKB/Swiss-Prot
  ENSMUST00000138807.8 UniProtKB/TrEMBL
  ENSMUST00000175875.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GLI_C2H2-zinc-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101786 ENTREZGENE
NCBI Gene 17764 ENTREZGENE
PANTHER KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  LOW QUALITY PROTEIN: ZINC FINGER PROTEIN 239-RELATED UniProtKB/TrEMBL
  METAL REGULATORY TRANSCRIPTION FACTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mtf1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDC6_MOUSE UniProtKB/TrEMBL
  B1ARW6_MOUSE UniProtKB/TrEMBL
  MTF1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80W60_MOUSE UniProtKB/TrEMBL
  Q80W61_MOUSE UniProtKB/TrEMBL
  Q80W62_MOUSE UniProtKB/TrEMBL
  Q80W63_MOUSE UniProtKB/TrEMBL
  Q8BSY2 ENTREZGENE, UniProtKB/TrEMBL
  Q9CZF3_MOUSE UniProtKB/TrEMBL
  Q9JJW8 ENTREZGENE
UniProt Secondary Q9JJW8 UniProtKB/Swiss-Prot