 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway AnnotationsPhenotype Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsMolecular Pathway AnnotationsPhenotype AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway Annotations
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Phenotype AnnotationsMammalian Phenotype
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References - curated| 1. | Fu X, etal., Oncogene. 2014 Aug 21;33(34):4296-306. doi: 10.1038/onc.2013.385. Epub 2013 Sep 23. |
| 2. | Hallett RM and Hassell JA, BMC Res Notes. 2011 Mar 31;4:95. doi: 10.1186/1756-0500-4-95. |
| 3. | MGD data from the GO Consortium |
| 4. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
| 5. | RGD automated import pipeline |
| 6. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 7. | RGD automated import pipeline for gene-chemical interactions |
| 8. | Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6. |
| 9. | Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003. |
References - uncurated| PubMed | 10349636 11042159 11076861 11217851 12477932 12520002 12904583 14610273 16141072 16141073 16643855 18287559 18799693 19701194 19713958 21677750 21873635 22083510 23209448 24316575 28665939 28671666 28792939 30617251 31138677 31777931 32325033 |
Genomics
Comparative Map Data| Tut4 (Mus musculus - house mouse) |
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| TUT4 (Homo sapiens - human) |
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| Tut4 (Rattus norvegicus - Norway rat) |
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| Tut4 (Chinchilla lanigera - long-tailed chinchilla) |
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| TUT4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| TUT4 (Canis lupus familiaris - dog) |
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| Tut4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| TUT4 (Sus scrofa - pig) |
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| TUT4 (Chlorocebus sabaeus - African green monkey) |
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| Tut4 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| 13.MMHAP54FLE1.seq |
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QTLs in Region (GRCm38)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001379663 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_001379664 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001379665 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_175472 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006502978 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006502980 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006502983 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006502984 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320138 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320139 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320140 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320141 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030253437 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AF194972 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AI451654 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK031299 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK033820 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK041821 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK049279 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK077768 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK134388 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK220327 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AL626783 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AL627238 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC024681 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC038132 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC038931 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC145507 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC150791 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSMUST00000043368 ⟹ ENSMUSP00000044836 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000097925 ⟹ ENSMUSP00000095538 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000106673 ⟹ ENSMUSP00000102284 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000127602 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000128042 ⟹ ENSMUSP00000116253 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000138088 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000138809 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000145590 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000151349 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000153916 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSMUST00000155068 ⟹ ENSMUSP00000120172 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_175472 ⟹ NP_780681 | ||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
TCGCGCCGCTTCCCGGCGTCGGCGTGCTGGACCGCAGGACCCTCTCTCTCTCTTTCTCTCTCCChide sequence |
| RefSeq Acc Id: | XM_006502978 ⟹ XP_006503041 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_006502980 ⟹ XP_006503043 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_006502983 ⟹ XP_006503046 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_006502984 ⟹ XP_006503047 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_017320138 ⟹ XP_017175627 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_017320139 ⟹ XP_017175628 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_017320140 ⟹ XP_017175629 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_017320141 ⟹ XP_017175630 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
| RefSeq Acc Id: | XM_030253437 ⟹ XP_030109297 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACAATGCAGTTCGCGGCGCGGCGGACATGGCGGTGGAGTCCTGAGCTCGTCGTGTCCTGGCCThide sequence |
Protein Sequences| Protein RefSeqs | NP_001366592 | (Get FASTA) | NCBI Sequence Viewer |
| NP_001366593 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001366594 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_780681 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006503041 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006503043 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006503046 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006503047 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017175627 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017175628 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017175629 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017175630 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030109297 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAG38482 | (Get FASTA) | NCBI Sequence Viewer |
| AAI50792 | (Get FASTA) | NCBI Sequence Viewer | |
| B2RX14 | (Get FASTA) | NCBI Sequence Viewer | |
| BAC33655 | (Get FASTA) | NCBI Sequence Viewer | |
| BAD90397 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE20605 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE22125 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_780681 ⟸ NM_175472 |
| - UniProtKB: | B2RX14 (UniProtKB/Swiss-Prot), Q3V3D5 (UniProtKB/TrEMBL), Q9EQN6 (UniProtKB/TrEMBL) |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_006503046 ⟸ XM_006502983 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_006503047 ⟸ XM_006502984 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_006503043 ⟸ XM_006502980 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_006503041 ⟸ XM_006502978 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_017175630 ⟸ XM_017320141 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_017175628 ⟸ XM_017320139 |
| - Peptide Label: | isoform X3 |
| - UniProtKB: | A2A8R7 (UniProtKB/TrEMBL) |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_017175627 ⟸ XM_017320138 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_017175629 ⟸ XM_017320140 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEhide sequence |
| RefSeq Acc Id: | XP_030109297 ⟸ XM_030253437 |
| - Peptide Label: | isoform X5 |
| RefSeq Acc Id: | ENSMUSP00000102284 ⟸ ENSMUST00000106673 |
| RefSeq Acc Id: | ENSMUSP00000116253 ⟸ ENSMUST00000128042 |
| RefSeq Acc Id: | ENSMUSP00000095538 ⟸ ENSMUST00000097925 |
| RefSeq Acc Id: | ENSMUSP00000120172 ⟸ ENSMUST00000155068 |
| RefSeq Acc Id: | ENSMUSP00000044836 ⟸ ENSMUST00000043368 |
Protein Domains
CCHC-type PAP-associated
Promoters| RGD ID: | 6836694 | ||||||||
| Promoter ID: | MM_KWN:38896 | ||||||||
| Type: | CpG-Island | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | MPROMDB | ||||||||
| Tissues & Cell Lines: | 3T3L1_Day1, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell | ||||||||
| Transcripts: | ENSMUST00000097925, ENSMUST00000106673, NM_175472 | ||||||||
| Position: |
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| RGD ID: | 6836723 | ||||||||
| Promoter ID: | MM_KWN:38906 | ||||||||
| Type: | Non-CpG | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | MPROMDB | ||||||||
| Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain | ||||||||
| Transcripts: | OTTMUST00000018740, UC008UBE.1 | ||||||||
| Position: |
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| RGD ID: | 6884130 | ||||||||
| Promoter ID: | EPDNEW_M5515 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Zcchc11_1 | ||||||||
| Description: | Mus musculus zinc finger, CCHC domain containing 11 , mRNA. | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | MGI:2445126 | AgrOrtholog |
| Ensembl Genes | ENSMUSG00000034610 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSMUSP00000044836 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSMUSP00000095538 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUSP00000102284 | UniProtKB/TrEMBL | |
| ENSMUSP00000116253 | UniProtKB/TrEMBL | |
| ENSMUSP00000120172 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSMUST00000043368 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSMUST00000097925 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUST00000106673 | UniProtKB/TrEMBL | |
| ENSMUST00000128042 | UniProtKB/TrEMBL | |
| ENSMUST00000155068 | ENTREZGENE, UniProtKB/TrEMBL | |
| InterPro | PAP_assoc | UniProtKB/Swiss-Prot |
| Polymerase_NTP_transf_dom | UniProtKB/Swiss-Prot | |
| WH_DNA-bd_sf | UniProtKB/TrEMBL | |
| Znf_CCHC | UniProtKB/Swiss-Prot | |
| Znf_CCHC_sf | UniProtKB/Swiss-Prot | |
| KEGG Report | mmu:230594 | UniProtKB/Swiss-Prot |
| MGD | MGI:2445126 | ENTREZGENE |
| NCBI Gene | 230594 | ENTREZGENE |
| Pfam | NTP_transf_2 | UniProtKB/Swiss-Prot |
| PAP_assoc | UniProtKB/Swiss-Prot | |
| zf-CCHC | UniProtKB/Swiss-Prot | |
| PhenoGen | Tut4 | PhenoGen |
| PROSITE | ZF_CCHC | UniProtKB/Swiss-Prot |
| ZINC_FINGER_C2H2_1 | UniProtKB/Swiss-Prot | |
| SMART | ZnF_C2HC | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF46785 | UniProtKB/TrEMBL |
| SSF57756 | UniProtKB/Swiss-Prot | |
| UniGene | Mm.25181 | ENTREZGENE |
| Mm.446602 | ENTREZGENE | |
| UniProt | A0A0A0MQJ6_MOUSE | UniProtKB/TrEMBL |
| A2A8R1_MOUSE | UniProtKB/TrEMBL | |
| A2A8R7 | ENTREZGENE, UniProtKB/TrEMBL | |
| A2A9H0_MOUSE | UniProtKB/TrEMBL | |
| B2RX14 | ENTREZGENE | |
| Q3V3D5 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q8BIZ5_MOUSE | UniProtKB/TrEMBL | |
| Q9EQN6 | ENTREZGENE, UniProtKB/TrEMBL | |
| TUT4_MOUSE | UniProtKB/Swiss-Prot | |
| UniProt Secondary | A2A8R8 | UniProtKB/Swiss-Prot |
| Q3UYT6 | UniProtKB/Swiss-Prot | |
| Q5DU43 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2018-05-29 | Tut4 | terminal uridylyl transferase 4 | Zcchc11 | zinc finger, CCHC domain containing 11 | Symbol and/or name change | 5135510 | APPROVED |
 |
| More on Tut4 | |
|
Alliance Gene |
|
NCBI Gene |
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Ensembl Gene |
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JBrowse: mm9 mm10 |
|
MGI Report |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1320866 |
| Created: | 2005-01-12 |
| Species: | Mus musculus |
| Last Modified: | 2020-05-05 |
| Status: | ACTIVE |
