Tut4 (terminal uridylyl transferase 4) - Rat Genome Database

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Gene: Tut4 (terminal uridylyl transferase 4) Mus musculus
Analyze
Symbol: Tut4
Name: terminal uridylyl transferase 4
RGD ID: 1320866
MGI Page MGI
Description: Enables RNA uridylyltransferase activity and miRNA binding activity. Involved in several processes, including RNA metabolic process; interleukin-6-mediated signaling pathway; and positive regulation of interleukin-6 production. Acts upstream of or within negative regulation of NF-kappaB transcription factor activity and regulation of lipopolysaccharide-mediated signaling pathway. Located in cytoplasm and nucleus. Is expressed in 1-cell stage embryo; 2-cell stage embryo; primary oocyte; and secondary oocyte. Human ortholog(s) of this gene implicated in liver benign neoplasm. Orthologous to human TUT4 (terminal uridylyl transferase 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030404K05Rik; 9230115F04Rik; KIAA0191; mKIAA0191; PPAPD3; Tent; Tent3a; terminal uridylyltransferase 4; TUTase 4; Zcchc11; zinc finger CCHC domain-containing protein 11; zinc finger, CCHC domain containing 11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394108,316,607 - 108,416,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4108,316,623 - 108,416,618 (+)EnsemblGRCm39 Ensembl
GRCm384108,459,410 - 108,559,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,459,426 - 108,559,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv374108,132,031 - 108,232,020 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,957,358 - 108,057,347 (+)NCBIMGSCv36mm8
Celera4106,802,820 - 106,902,634 (+)NCBICelera
Cytogenetic Map4C7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. miR-26a enhances miRNA biogenesis by targeting Lin28B and Zcchc11 to suppress tumor growth and metastasis. Fu X, etal., Oncogene. 2014 Aug 21;33(34):4296-306. doi: 10.1038/onc.2013.385. Epub 2013 Sep 23.
2. E2F1 and KIAA0191 expression predicts breast cancer patient survival. Hallett RM and Hassell JA, BMC Res Notes. 2011 Mar 31;4:95. doi: 10.1186/1756-0500-4-95.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
9. The long and short of microRNA. Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16643855   PMID:18287559  
PMID:18799693   PMID:19701194   PMID:19713958   PMID:21677750   PMID:21873635   PMID:22083510   PMID:23209448   PMID:24316575   PMID:26178733   PMID:28665939   PMID:28671666   PMID:28792939  
PMID:30617251   PMID:31138677   PMID:31777931   PMID:32325033   PMID:32554809   PMID:36417873  


Genomics

Comparative Map Data
Tut4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394108,316,607 - 108,416,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4108,316,623 - 108,416,618 (+)EnsemblGRCm39 Ensembl
GRCm384108,459,410 - 108,559,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,459,426 - 108,559,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv374108,132,031 - 108,232,020 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364107,957,358 - 108,057,347 (+)NCBIMGSCv36mm8
Celera4106,802,820 - 106,902,634 (+)NCBICelera
Cytogenetic Map4C7NCBI
TUT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38152,423,275 - 52,553,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl152,408,282 - 52,553,487 (-)EnsemblGRCh38hg38GRCh38
GRCh37152,888,947 - 53,018,764 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36152,661,535 - 52,791,331 (-)NCBINCBI36Build 36hg18NCBI36
Celera151,175,645 - 51,305,459 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,004,891 - 51,134,679 (-)NCBIHuRef
CHM1_1153,006,328 - 53,136,112 (-)NCBICHM1_1
T2T-CHM13v2.0152,304,743 - 52,434,560 (-)NCBIT2T-CHM13v2.0
Tut4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25123,201,723 - 123,306,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5123,203,003 - 123,306,465 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5125,825,672 - 125,929,216 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05127,548,743 - 127,652,301 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05127,600,037 - 127,703,592 (+)NCBIRnor_WKY
Rnor_6.05128,063,880 - 128,168,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5128,083,118 - 128,168,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05131,905,082 - 132,009,237 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,565,023 - 129,860,103 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15129,590,506 - 129,865,448 (+)NCBI
Celera5121,938,291 - 122,041,113 (+)NCBICelera
Cytogenetic Map5q34NCBI
Tut4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,646,245 - 6,734,066 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,610,350 - 6,734,606 (+)NCBIChiLan1.0ChiLan1.0
TUT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1153,292,477 - 53,422,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,292,477 - 53,422,893 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0151,684,408 - 51,815,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TUT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,832,208 - 8,958,136 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,832,199 - 9,047,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,984,410 - 9,117,778 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,955,383 - 9,088,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,955,377 - 9,067,361 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,768,557 - 8,901,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,857,421 - 8,990,869 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,874,086 - 9,008,805 (+)NCBIUU_Cfam_GSD_1.0
Tut4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505866,857,291 - 66,946,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365228,469,443 - 8,560,447 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365228,468,092 - 8,560,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,692,797 - 159,793,758 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,655,658 - 159,794,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26147,319,840 - 147,467,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12080,395,484 - 80,522,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2080,395,581 - 80,523,671 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603336,748,099 - 36,875,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tut4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624859675,754 - 800,343 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624859676,112 - 800,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1062
Count of miRNA genes:472
Interacting mature miRNAs:539
Transcripts:ENSMUST00000043368, ENSMUST00000097925, ENSMUST00000106673, ENSMUST00000127602, ENSMUST00000128042, ENSMUST00000138088, ENSMUST00000138809, ENSMUST00000145590, ENSMUST00000151349, ENSMUST00000153916, ENSMUST00000155068
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
14696687Gdq1_mgrooming duration QTL 1, males (mouse)496888237111857197Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse

Markers in Region
13.MMHAP54FLE1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384108,501,152 - 108,501,260UniSTSGRCm38
MGSCv374108,173,757 - 108,173,865UniSTSGRCm37
Celera4106,844,681 - 106,844,789UniSTS
Cytogenetic Map4C7UniSTS
Whitehead_YAC6 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001379663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF194972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI451654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL626783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043368   ⟹   ENSMUSP00000044836
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,316,623 - 108,416,612 (+)Ensembl
GRCm38.p6 Ensembl4108,459,426 - 108,559,415 (+)Ensembl
RefSeq Acc Id: ENSMUST00000097925   ⟹   ENSMUSP00000095538
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,317,207 - 108,416,618 (+)Ensembl
GRCm38.p6 Ensembl4108,460,010 - 108,559,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106673   ⟹   ENSMUSP00000102284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,316,623 - 108,336,350 (+)Ensembl
GRCm38.p6 Ensembl4108,459,426 - 108,479,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,406,282 - 108,412,632 (+)Ensembl
GRCm38.p6 Ensembl4108,549,085 - 108,555,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128042   ⟹   ENSMUSP00000116253
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,412,933 - 108,416,251 (+)Ensembl
GRCm38.p6 Ensembl4108,555,736 - 108,559,054 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138088
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,399,615 - 108,400,423 (+)Ensembl
GRCm38.p6 Ensembl4108,542,418 - 108,543,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,383,671 - 108,386,503 (+)Ensembl
GRCm38.p6 Ensembl4108,526,474 - 108,529,306 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,412,649 - 108,416,612 (+)Ensembl
GRCm38.p6 Ensembl4108,555,452 - 108,559,415 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,399,463 - 108,405,483 (+)Ensembl
GRCm38.p6 Ensembl4108,542,266 - 108,548,286 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153916
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,399,562 - 108,400,430 (+)Ensembl
GRCm38.p6 Ensembl4108,542,365 - 108,543,233 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155068   ⟹   ENSMUSP00000120172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4108,336,278 - 108,381,547 (+)Ensembl
GRCm38.p6 Ensembl4108,479,081 - 108,524,350 (+)Ensembl
RefSeq Acc Id: NM_001379663   ⟹   NP_001366592
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,205 - 108,416,612 (+)NCBI
GRCm384108,460,008 - 108,559,415 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379664   ⟹   NP_001366593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,205 - 108,416,612 (+)NCBI
GRCm384108,460,008 - 108,559,415 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379665   ⟹   NP_001366594
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,205 - 108,416,612 (+)NCBI
GRCm384108,460,008 - 108,559,415 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175472   ⟹   NP_780681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,316,607 - 108,416,612 (+)NCBI
GRCm384108,459,410 - 108,559,415 (+)NCBI
MGSCv374108,132,031 - 108,232,020 (+)RGD
Celera4106,802,820 - 106,902,634 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502980   ⟹   XP_006503043
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
GRCm384108,460,007 - 108,559,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502983   ⟹   XP_006503046
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,381,956 (+)NCBI
GRCm384108,460,007 - 108,524,759 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320139   ⟹   XP_017175628
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
GRCm384108,460,007 - 108,559,415 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253437   ⟹   XP_030109297
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
GRCm384108,460,007 - 108,559,415 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164023   ⟹   XP_036019916
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164024   ⟹   XP_036019917
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164025   ⟹   XP_036019918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164026   ⟹   XP_036019919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164027   ⟹   XP_036019920
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164028   ⟹   XP_036019921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,416,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164029   ⟹   XP_036019922
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,395,825 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941868
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394108,317,202 - 108,377,490 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_780681   ⟸   NM_175472
- Peptide Label: isoform 3
- UniProtKB: Q5DU43 (UniProtKB/Swiss-Prot),   B2RX14 (UniProtKB/Swiss-Prot),   Q3V3D5 (UniProtKB/TrEMBL),   Q9EQN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503046   ⟸   XM_006502983
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006503043   ⟸   XM_006502980
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017175628   ⟸   XM_017320139
- Peptide Label: isoform X7
- UniProtKB: A2A8R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109297   ⟸   XM_030253437
- Peptide Label: isoform X9
- UniProtKB: Q5DU43 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001366592   ⟸   NM_001379663
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001366593   ⟸   NM_001379664
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001366594   ⟸   NM_001379665
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000102284   ⟸   ENSMUST00000106673
RefSeq Acc Id: ENSMUSP00000116253   ⟸   ENSMUST00000128042
RefSeq Acc Id: ENSMUSP00000095538   ⟸   ENSMUST00000097925
RefSeq Acc Id: ENSMUSP00000120172   ⟸   ENSMUST00000155068
RefSeq Acc Id: ENSMUSP00000044836   ⟸   ENSMUST00000043368
RefSeq Acc Id: XP_036019916   ⟸   XM_036164023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036019918   ⟸   XM_036164025
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036019917   ⟸   XM_036164024
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019919   ⟸   XM_036164026
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036019920   ⟸   XM_036164027
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036019921   ⟸   XM_036164028
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036019922   ⟸   XM_036164029
- Peptide Label: isoform X10
Protein Domains
CCHC-type   PAP-associated   TUTase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RX14-F1-model_v2 AlphaFold B2RX14 1-1644 view protein structure

Promoters
RGD ID:6836694
Promoter ID:MM_KWN:38896
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:ENSMUST00000097925,   ENSMUST00000106673,   NM_175472
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364108,131,876 - 108,132,757 (+)MPROMDB
RGD ID:6836723
Promoter ID:MM_KWN:38906
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:OTTMUST00000018740,   UC008UBE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364108,227,996 - 108,228,496 (+)MPROMDB
RGD ID:6884130
Promoter ID:EPDNEW_M5515
Type:multiple initiation site
Name:Zcchc11_1
Description:Mus musculus zinc finger, CCHC domain containing 11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384108,460,008 - 108,460,068EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445126 AgrOrtholog
Ensembl Genes ENSMUSG00000034610 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044836 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000095538 ENTREZGENE
  ENSMUSP00000095538.3 UniProtKB/TrEMBL
  ENSMUSP00000102284.2 UniProtKB/TrEMBL
  ENSMUSP00000116253.2 UniProtKB/TrEMBL
  ENSMUSP00000120172 ENTREZGENE
  ENSMUSP00000120172.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043368 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000097925 ENTREZGENE
  ENSMUST00000097925.9 UniProtKB/TrEMBL
  ENSMUST00000106673.8 UniProtKB/TrEMBL
  ENSMUST00000128042.2 UniProtKB/TrEMBL
  ENSMUST00000155068 ENTREZGENE
  ENSMUST00000155068.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAP_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Polymerase_NTP_transf_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUTase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2445126 ENTREZGENE
NCBI Gene 230594 ENTREZGENE
Pfam NTP_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAP_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUTase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tut4 PhenoGen
PROSITE ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
SMART ZnF_C2HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF57756 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81301 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQJ6_MOUSE UniProtKB/TrEMBL
  A2A8R1_MOUSE UniProtKB/TrEMBL
  A2A8R7 ENTREZGENE, UniProtKB/TrEMBL
  A2A9H0_MOUSE UniProtKB/TrEMBL
  B2RX14 ENTREZGENE
  Q3V3D5 ENTREZGENE, UniProtKB/TrEMBL
  Q5DU43 ENTREZGENE
  Q8BIZ5_MOUSE UniProtKB/TrEMBL
  Q9EQN6 ENTREZGENE, UniProtKB/TrEMBL
  TUT4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2A8R8 UniProtKB/Swiss-Prot
  Q3UYT6 UniProtKB/Swiss-Prot
  Q5DU43 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Tut4  terminal uridylyl transferase 4  Zcchc11  zinc finger, CCHC domain containing 11  Symbol and/or name change 5135510 APPROVED