Pax7 (paired box 7) - Rat Genome Database

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Gene: Pax7 (paired box 7) Mus musculus
Analyze
Symbol: Pax7
Name: paired box 7
RGD ID: 1557569
MGI Page MGI
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in skeletal muscle satellite cell differentiation. Acts upstream of or within several processes, including nervous system development; positive regulation of myoblast proliferation; and skeletal system development. Is active in nucleus. Is expressed in several structures, including central nervous system; embryo mesenchyme; genitourinary system; sensory organ; and skeletal musculature. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma and congenital myopathy 19. Orthologous to human PAX7 (paired box 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: paired box gene 7; paired box protein Pax-7; paired box transcription factor PAX7; Pax; Pax-7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,464,357 - 139,560,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,464,373 - 139,560,839 (-)EnsemblGRCm39 Ensembl
GRCm384139,737,059 - 139,833,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,737,062 - 139,833,528 (-)EnsemblGRCm38mm10GRCm38
MGSCv374139,293,996 - 139,388,883 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364139,010,157 - 139,105,044 (-)NCBIMGSCv36mm8
Celera4141,530,711 - 141,629,332 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal craniofacial morphology  (IAGP)
abnormal extraocular muscle morphology  (IAGP)
abnormal mitochondrial ATP synthesis coupled electron transport  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal muscle development  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal muscle precursor cell morphology  (IAGP)
abnormal muscle regeneration  (IAGP)
abnormal myoblast differentiation  (IAGP)
abnormal myogenesis  (IAGP)
abnormal myotome development  (IAGP)
abnormal nasal capsule morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal oxidative phosphorylation  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal response to injury  (IAGP)
abnormal sarcomere morphology  (IAGP)
abnormal serous gland morphology  (IAGP)
abnormal skeletal muscle fiber size  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal skeletal muscle satellite cell proliferation  (IAGP)
abnormal small intestine morphology  (IAGP)
ataxia  (IAGP)
cachexia  (IAGP)
cyanosis  (IAGP)
decreased birth body size  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased circulating triglyceride level  (IEA)
decreased mitochondrial fission  (IAGP)
decreased satellite cell number  (IAGP)
decreased skeletal muscle fiber diameter  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased skeletal muscle size  (IAGP)
decreased skeletal muscle weight  (IAGP)
delayed skeletal muscle regeneration  (IAGP)
early cellular replicative senescence  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
impaired skeletal muscle contractility  (IAGP)
impaired skeletal muscle regeneration  (IAGP)
increased medulloblastoma incidence  (IAGP)
increased rhabdomyosarcoma incidence  (IAGP)
increased sarcoma incidence  (IAGP)
increased skeletal muscle fiber density  (IAGP)
increased skeletal muscle weight  (IAGP)
increased tumor incidence  (IAGP)
lacrimal bone hypoplasia  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
maxilla hypoplasia  (IAGP)
muscle hypoplasia  (IAGP)
muscle weakness  (IAGP)
myopathy  (IAGP)
myositis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
pointed snout  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
preweaning lethality, incomplete penetrance  (IEA)
primary atelectasis  (IAGP)
short maxilla  (IAGP)
skeletal muscle fibrosis  (IAGP)
skeletal muscle necrosis  (IAGP)
thin diaphragm muscle  (IAGP)
turbinate hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1351769   PMID:1485966   PMID:1521164   PMID:1685142   PMID:1982921   PMID:7590262   PMID:7613032   PMID:7883790   PMID:7981748   PMID:8054974   PMID:8126546   PMID:8575294  
PMID:8631247   PMID:8631261   PMID:8756299   PMID:8943322   PMID:8955271   PMID:9016952   PMID:9094721   PMID:9230312   PMID:9256352   PMID:9375383   PMID:9409667   PMID:9608680  
PMID:9636069   PMID:9655799   PMID:9731536   PMID:9795149   PMID:9858722   PMID:9988216   PMID:10079225   PMID:10079229   PMID:10197584   PMID:10328847   PMID:10349636   PMID:10354469  
PMID:10399918   PMID:10411402   PMID:10693795   PMID:11030621   PMID:11042159   PMID:11071781   PMID:11076861   PMID:11144352   PMID:11217851   PMID:11239429   PMID:11449277   PMID:11502253  
PMID:11511541   PMID:11567614   PMID:11673526   PMID:11684651   PMID:11748151   PMID:11886853   PMID:11944941   PMID:11960707   PMID:12062039   PMID:12175515   PMID:12372301   PMID:12435353  
PMID:12435358   PMID:12435361   PMID:12435628   PMID:12435629   PMID:12466851   PMID:12571110   PMID:12787506   PMID:12812795   PMID:12874124   PMID:12925591   PMID:14499644   PMID:14517283  
PMID:14559212   PMID:14603322   PMID:14614146   PMID:14681479   PMID:14723851   PMID:14732405   PMID:15065125   PMID:15075292   PMID:15132998   PMID:15138500   PMID:15215207   PMID:15218525  
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PMID:17219401   PMID:17241623   PMID:17321515   PMID:17332510   PMID:17360543   PMID:17396232   PMID:17418413   PMID:17442818   PMID:17475798   PMID:17477400   PMID:17504940   PMID:17504941  
PMID:17507410   PMID:17540178   PMID:17540357   PMID:17548510   PMID:17559643   PMID:17611227   PMID:17729296   PMID:17922007   PMID:17949710   PMID:17953485   PMID:18066051   PMID:18198279  
PMID:18243171   PMID:18272593   PMID:18287559   PMID:18367555   PMID:18429041   PMID:18480159   PMID:18513381   PMID:18590716   PMID:18593883   PMID:18802040   PMID:18816853   PMID:18833193  
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PMID:19332644   PMID:19334287   PMID:19346403   PMID:19357274   PMID:19448158   PMID:19458195   PMID:19531352   PMID:19531353   PMID:19535499   PMID:19554048   PMID:19592574   PMID:19684112  
PMID:19741146   PMID:19776033   PMID:19842188   PMID:19877275   PMID:20013826   PMID:20059953   PMID:20059958   PMID:20107895   PMID:20144785   PMID:20159594   PMID:20171203   PMID:20178747  
PMID:20206242   PMID:20417199   PMID:20463034   PMID:20562861   PMID:20596238   PMID:20631180   PMID:20639877   PMID:20641127   PMID:20680010   PMID:20692232   PMID:20696709   PMID:20932939  
PMID:21035439   PMID:21041476   PMID:21045211   PMID:21085653   PMID:21122108   PMID:21131290   PMID:21143873   PMID:21162077   PMID:21177349   PMID:21209331   PMID:21246650   PMID:21248112  
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PMID:24808539   PMID:24870234   PMID:24871946   PMID:24906372   PMID:24912677   PMID:24924195   PMID:24927569   PMID:24934157   PMID:24947469   PMID:24948600   PMID:24952961   PMID:24996922  
PMID:25001283   PMID:25005473   PMID:25030697   PMID:25069613   PMID:25085416   PMID:25087979   PMID:25123133   PMID:25133429   PMID:25179606   PMID:25194572   PMID:25205686   PMID:25220152  
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PMID:25704816   PMID:25715398   PMID:25721514   PMID:25760946   PMID:25774014   PMID:25774500   PMID:25794678   PMID:25800090   PMID:25807280   PMID:25848030   PMID:25907274   PMID:25971691  
PMID:25998386   PMID:26028225   PMID:26036967   PMID:26042028   PMID:26074812   PMID:26098312   PMID:26109658   PMID:26151913   PMID:26153230   PMID:26160855   PMID:26178867   PMID:26207754  
PMID:26257176   PMID:26266089   PMID:26275053   PMID:26304725   PMID:26304770   PMID:26312504   PMID:26370082   PMID:26372956   PMID:26384382   PMID:26387456   PMID:26387956   PMID:26430214  
PMID:26440893   PMID:26453297   PMID:26586200   PMID:26603188   PMID:26619121   PMID:26621269   PMID:26648529   PMID:26649785   PMID:26669898   PMID:26688546   PMID:26712358   PMID:26718003  
PMID:26721734   PMID:26731484   PMID:26738589   PMID:26854227   PMID:26858401   PMID:26869039   PMID:26884322   PMID:26904948   PMID:26941360   PMID:26949601   PMID:26965371   PMID:26987019  
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PMID:28463680   PMID:28490013   PMID:28498863   PMID:28515121   PMID:28535373   PMID:28583253   PMID:28589555   PMID:28592560   PMID:28607093   PMID:28625870   PMID:28701357   PMID:28775681  
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PMID:29139178   PMID:29139538   PMID:29141228   PMID:29166613   PMID:29168801   PMID:29220665   PMID:29231808   PMID:29249462   PMID:29263370   PMID:29269426   PMID:29316425   PMID:29323161  
PMID:29358650   PMID:29364044   PMID:29395054   PMID:29415061   PMID:29466757   PMID:29472596   PMID:29483576   PMID:29487109   PMID:29533927   PMID:29555813   PMID:29575305   PMID:29578405  
PMID:29581096   PMID:29581287   PMID:29606596   PMID:29670077   PMID:29674978   PMID:29679560   PMID:29681515   PMID:29706500   PMID:29742392   PMID:29768039   PMID:29768404   PMID:29795344  
PMID:29881353   PMID:29882512   PMID:29900636   PMID:29920276   PMID:29969095   PMID:29987034   PMID:30010933   PMID:30045918   PMID:30050118   PMID:30081710   PMID:30106373   PMID:30139374  
PMID:30139390   PMID:30206360   PMID:30244867   PMID:30245009   PMID:30279563   PMID:30284969   PMID:30290177   PMID:30305290   PMID:30416072   PMID:30449715   PMID:30464263   PMID:30526691  
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PMID:30922843   PMID:30939245   PMID:30945349   PMID:30979776   PMID:30996264   PMID:31006621   PMID:31006622   PMID:31012848   PMID:31024170   PMID:31130354   PMID:31189923   PMID:31249377  
PMID:31277245   PMID:31291574   PMID:31291587   PMID:31348492   PMID:31393265   PMID:31408461   PMID:31433982   PMID:31444346   PMID:31534153   PMID:31535973   PMID:31545169   PMID:31685980  
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PMID:34856120   PMID:34884468   PMID:34911810   PMID:34932950   PMID:35045287   PMID:35050341   PMID:35115380   PMID:35127681   PMID:35225230   PMID:35228746   PMID:35243267   PMID:35301320  
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PMID:35705041   PMID:35733848   PMID:35734962   PMID:35765148   PMID:35781558   PMID:35793630   PMID:35803939   PMID:35839257   PMID:35859073   PMID:35874842   PMID:35926054   PMID:35950911  
PMID:35998641   PMID:35998642   PMID:36008423   PMID:36125902   PMID:36154712   PMID:36200826   PMID:36265906   PMID:36313551   PMID:36352000   PMID:36376321   PMID:36384129   PMID:36384141  
PMID:36400788   PMID:36446523   PMID:36543770   PMID:36595920   PMID:36627077   PMID:36656684   PMID:36669111   PMID:36723429   PMID:36724256   PMID:36729831   PMID:36800432   PMID:36815629  
PMID:36854304   PMID:36892464   PMID:36923937   PMID:36937923   PMID:37075755   PMID:37105173   PMID:37170065   PMID:37200088   PMID:37250337   PMID:37254794   PMID:37267120   PMID:37267426  
PMID:37272529   PMID:37291262   PMID:37315133   PMID:37591247   PMID:37591871   PMID:37624694   PMID:37647896   PMID:37704733   PMID:37705115   PMID:37723138   PMID:37883229   PMID:37914731  
PMID:37919520   PMID:37925530   PMID:37963838   PMID:38077152   PMID:38344749   PMID:38355793   PMID:38414856   PMID:38456551   PMID:38461287   PMID:38466355   PMID:38691453   PMID:38829202  
PMID:38848717   PMID:38875306   PMID:38876109   PMID:38982191   PMID:39015146   PMID:39037211   PMID:39051762   PMID:39121856   PMID:39226764   PMID:39392189   PMID:39475511   PMID:39569362  


Genomics

Comparative Map Data
Pax7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,464,357 - 139,560,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,464,373 - 139,560,839 (-)EnsemblGRCm39 Ensembl
GRCm384139,737,059 - 139,833,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,737,062 - 139,833,528 (-)EnsemblGRCm38mm10GRCm38
MGSCv374139,293,996 - 139,388,883 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364139,010,157 - 139,105,044 (-)NCBIMGSCv36mm8
Celera4141,530,711 - 141,629,332 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.83NCBI
PAX7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,630,846 - 18,748,866 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,630,846 - 18,748,866 (+)EnsemblGRCh38hg38GRCh38
GRCh37118,957,340 - 19,075,360 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,830,087 - 18,935,219 (+)NCBINCBI36Build 36hg18NCBI36
Celera117,287,191 - 17,405,157 (+)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef117,203,638 - 17,321,488 (+)NCBIHuRef
CHM1_1119,066,628 - 19,184,492 (+)NCBICHM1_1
T2T-CHM13v2.0118,450,908 - 18,568,930 (+)NCBIT2T-CHM13v2.0
Pax7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85157,279,623 - 157,381,188 (-)NCBIGRCr8
mRatBN7.25151,996,368 - 152,098,023 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,999,092 - 152,097,979 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,697,987 - 154,795,617 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05156,472,367 - 156,570,000 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05156,453,975 - 156,551,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05158,211,001 - 158,313,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5158,214,616 - 158,313,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,944,011 - 162,045,053 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,547,765 - 158,648,053 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5150,374,628 - 150,471,191 (-)NCBICelera
Cytogenetic Map5q36NCBI
Pax7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955527474,403 - 574,689 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955527474,450 - 573,869 (-)NCBIChiLan1.0ChiLan1.0
PAX7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21208,370,499 - 208,484,647 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11207,487,082 - 207,601,269 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0117,589,513 - 17,707,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,639,641 - 18,756,952 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,639,641 - 18,756,952 (+)Ensemblpanpan1.1panPan2
PAX7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,813,835 - 79,952,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,815,748 - 79,915,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,352,286 - 76,432,189 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0280,440,906 - 80,541,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl280,442,818 - 80,541,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,229,920 - 77,297,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,231,829 - 78,311,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,280,989 - 79,381,745 (-)NCBIUU_Cfam_GSD_1.0
Pax7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,220,382 - 39,310,785 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364745,045,284 - 5,131,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364745,045,284 - 5,131,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,161,097 - 77,267,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,160,827 - 77,268,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PAX7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,810,646 - 113,929,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20113,823,392 - 113,928,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660332,225,692 - 2,345,698 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247643,853,055 - 3,947,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247643,853,055 - 3,951,182 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pax7
6241 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2132
Count of miRNA genes:766
Interacting mature miRNAs:1016
Transcripts:ENSMUST00000030508, ENSMUST00000174681
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse

Markers in Region
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384139,739,136 - 139,739,782UniSTSGRCm38
MGSCv374139,384,597 - 139,385,439UniSTSGRCm37
MGSCv374139,385,463 - 139,386,128UniSTSGRCm37
MGSCv374139,384,500 - 139,386,112UniSTSGRCm37
Celera4141,531,766 - 141,532,408UniSTS
Cytogenetic Map4E1UniSTS
cM Map469.0UniSTS
cM Map469.0UniSTS
cM Map469.0UniSTS
cM Map469.0UniSTS
cM Map469.0UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E1UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384139,828,682 - 139,829,524UniSTSGRCm38
MGSCv374139,384,597 - 139,385,439UniSTSGRCm37
Celera4141,625,041 - 141,625,883UniSTS
Cytogenetic Map4E1UniSTS
cM Map469.0UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384139,829,548 - 139,830,213UniSTSGRCm38
MGSCv374139,385,463 - 139,386,128UniSTSGRCm37
Celera4141,625,907 - 141,626,572UniSTS
Cytogenetic Map4E1UniSTS
cM Map469.0UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E1UniSTS
cM Map469.0UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384139,828,585 - 139,830,197UniSTSGRCm38
MGSCv374139,384,500 - 139,386,112UniSTSGRCm37
Celera4141,624,944 - 141,626,556UniSTS
Cytogenetic Map4E1UniSTS
cM Map469.0UniSTS
Pax7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000030508   ⟹   ENSMUSP00000030508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4139,464,373 - 139,560,839 (-)Ensembl
GRCm38.p6 Ensembl4139,737,062 - 139,833,528 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174681   ⟹   ENSMUSP00000133536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4139,467,987 - 139,560,318 (-)Ensembl
GRCm38.p6 Ensembl4139,740,676 - 139,833,007 (-)Ensembl
RefSeq Acc Id: NM_011039   ⟹   NP_035169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394139,464,357 - 139,560,257 (-)NCBI
GRCm384139,738,081 - 139,832,968 (-)NCBI
MGSCv374139,293,996 - 139,388,883 (-)RGD
Celera4141,530,711 - 141,629,332 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538629   ⟹   XP_006538692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394139,464,370 - 139,560,836 (-)NCBI
GRCm384139,737,059 - 139,833,525 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538630   ⟹   XP_006538693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394139,464,370 - 139,560,841 (-)NCBI
GRCm384139,737,059 - 139,833,530 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538631   ⟹   XP_006538694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394139,464,370 - 139,560,417 (-)NCBI
GRCm384139,737,059 - 139,833,106 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035169   ⟸   NM_011039
- UniProtKB: Q9ES16 (UniProtKB/Swiss-Prot),   P47239 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538694   ⟸   XM_006538631
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006538693   ⟸   XM_006538630
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006538692   ⟸   XM_006538629
- Peptide Label: isoform X1
- UniProtKB: G3UX36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000133536   ⟸   ENSMUST00000174681
Ensembl Acc Id: ENSMUSP00000030508   ⟸   ENSMUST00000030508
Protein Domains
Homeobox   OAR   Paired

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47239-F1-model_v2 AlphaFold P47239 1-503 view protein structure

Promoters
RGD ID:6885254
Promoter ID:EPDNEW_M6078
Type:multiple initiation site
Name:Pax7_1
Description:Mus musculus paired box 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384139,832,946 - 139,833,006EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97491 AgrOrtholog
Ensembl Genes ENSMUSG00000028736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030508 ENTREZGENE
  ENSMUST00000030508.14 UniProtKB/Swiss-Prot
  ENSMUST00000174681 ENTREZGENE
  ENSMUST00000174681.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_DNA_bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Paired_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax7_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18509 UniProtKB/Swiss-Prot
MGD MGI:97491 ENTREZGENE
NCBI Gene 18509 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pax7 PhenoGen
PRINTS PAIREDBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UX36 ENTREZGENE, UniProtKB/TrEMBL
  P47239 ENTREZGENE, UniProtKB/Swiss-Prot
  Q7TPG3_MOUSE UniProtKB/TrEMBL
  Q9ES16 ENTREZGENE
UniProt Secondary Q9ES16 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Pax7  paired box 7    paired box gene 7  Symbol and/or name change 5135510 APPROVED