Cdca8 (cell division cycle associated 8) - Rat Genome Database

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Gene: Cdca8 (cell division cycle associated 8) Mus musculus
Analyze
Symbol: Cdca8
Name: cell division cycle associated 8
RGD ID: 1622345
MGI Page MGI
Description: Predicted to be involved in mitotic metaphase chromosome alignment. Predicted to act upstream of or within cell division. Located in chromocenter. Is expressed in several structures, including central nervous system; early embryo; gonad; metanephros; and retina. Orthologous to human CDCA8 (cell division cycle associated 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4831429J16Rik; AU044747; Bo; BOR; borealin; cell division cycle-associated protein 8; D4Ertd421; D4Ertd421e; Da; DasraB; embryonic stem cell-related; MESrg; MESRGP
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,812,258 - 124,830,710 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,812,258 - 124,833,104 (-)EnsemblGRCm39 Ensembl
GRCm384124,918,465 - 124,936,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,918,465 - 124,939,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,595,709 - 124,614,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,420,769 - 124,439,207 (-)NCBIMGSCv36mm8
Celera4123,240,998 - 123,259,215 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antimycin A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-carotene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP,ISO)
chromium(6+)  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diallyl trisulfide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP,ISO)
dieldrin  (ISO)
diethyl maleate  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (EXP,ISO)
FR900359  (ISO)
hydroxyurea  (ISO)
indole-3-methanol  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
lidocaine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
mocetinostat  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (EXP)
nickel atom  (ISO)
niclosamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tacrolimus hydrate  (EXP)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
toxaphene  (ISO)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
tunicamycin  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Wang T, etal., Front Immunol. 2022 May 27;13:843408. doi: 10.3389/fimmu.2022.843408. eCollection 2022.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15226823  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17881355   PMID:17956729   PMID:18311593   PMID:18337066   PMID:19114063   PMID:19283064   PMID:20360068   PMID:20568244  
PMID:21677750   PMID:21873635   PMID:26410627   PMID:26496610   PMID:27542413   PMID:27694478   PMID:28535371   PMID:30973865   PMID:32325033   PMID:34321999   PMID:37964961  


Genomics

Comparative Map Data
Cdca8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,812,258 - 124,830,710 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,812,258 - 124,833,104 (-)EnsemblGRCm39 Ensembl
GRCm384124,918,465 - 124,936,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,918,465 - 124,939,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv374124,595,709 - 124,614,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,420,769 - 124,439,207 (-)NCBIMGSCv36mm8
Celera4123,240,998 - 123,259,215 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.93NCBI
CDCA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,692,516 - 37,709,719 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,692,481 - 37,709,719 (+)EnsemblGRCh38hg38GRCh38
GRCh37138,158,188 - 38,175,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,930,746 - 37,947,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 34137,827,251 - 37,844,482NCBI
Celera136,436,198 - 36,453,412 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,275,336 - 36,292,634 (+)NCBIHuRef
CHM1_1138,274,230 - 38,291,508 (+)NCBICHM1_1
T2T-CHM13v2.0137,557,243 - 37,574,423 (+)NCBIT2T-CHM13v2.0
Cdca8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,461,082 - 142,483,336 (-)NCBIGRCr8
mRatBN7.25137,176,414 - 137,198,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,176,417 - 137,198,629 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,879,673 - 139,902,403 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,649,678 - 141,672,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,656,859 - 141,679,587 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,911,310 - 142,933,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,911,305 - 142,933,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,680,981 - 146,700,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,251,164 - 144,276,352 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5135,697,190 - 135,716,709 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cdca8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,486,452 - 15,499,867 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,486,515 - 15,501,838 (+)NCBIChiLan1.0ChiLan1.0
CDCA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,129,491 - 189,146,874 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,258,572 - 188,275,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,965,470 - 36,982,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,314,597 - 38,331,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,314,597 - 38,331,625 (+)Ensemblpanpan1.1panPan2
CDCA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,796,980 - 4,809,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,798,197 - 4,809,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,044,396 - 5,057,330 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,931,395 - 4,944,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,931,471 - 4,944,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,790,802 - 4,803,734 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,857,151 - 4,870,085 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,873,734 - 4,886,669 (-)NCBIUU_Cfam_GSD_1.0
Cdca8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,070,308 - 54,086,901 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,895,640 - 19,912,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,895,681 - 19,912,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,750,689 - 93,764,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,750,694 - 93,764,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDCA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,151,814 - 95,169,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,151,752 - 95,169,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,640,702 - 21,658,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdca8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,418,585 - 20,434,026 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,418,342 - 20,433,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdca8
705 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:830
Count of miRNA genes:524
Interacting mature miRNAs:616
Transcripts:ENSMUST00000030690, ENSMUST00000084296, ENSMUST00000125801, ENSMUST00000135571, ENSMUST00000147074, ENSMUST00000165281
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse

Markers in Region
AU044747  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,918,597 - 124,918,717UniSTSGRCm38
MGSCv374124,595,841 - 124,595,961UniSTSGRCm37
Celera4123,241,130 - 123,241,250UniSTS
Cytogenetic Map4D2.2UniSTS
Whitehead/MRC_RH41611.09UniSTS
RH127302  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384124,918,483 - 124,918,731UniSTSGRCm38
MGSCv374124,595,727 - 124,595,975UniSTSGRCm37
Celera4123,241,016 - 123,241,264UniSTS
Cytogenetic Map4D2.2UniSTS
cM Map457.6UniSTS
Whitehead/MRC_RH41611.04UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_026560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK003755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY550907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY137168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000030690   ⟹   ENSMUSP00000030690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,812,904 - 124,830,666 (-)Ensembl
GRCm38.p6 Ensembl4124,919,111 - 124,936,873 (-)Ensembl
RefSeq Acc Id: ENSMUST00000084296   ⟹   ENSMUSP00000081319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,812,258 - 124,830,710 (-)Ensembl
GRCm38.p6 Ensembl4124,918,465 - 124,936,917 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,817,417 - 124,830,574 (-)Ensembl
GRCm38.p6 Ensembl4124,923,624 - 124,936,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,813,349 - 124,830,200 (-)Ensembl
GRCm38.p6 Ensembl4124,919,556 - 124,936,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,817,597 - 124,830,635 (-)Ensembl
GRCm38.p6 Ensembl4124,923,804 - 124,936,842 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165281   ⟹   ENSMUSP00000132145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4124,820,479 - 124,833,104 (-)Ensembl
GRCm38.p6 Ensembl4124,926,686 - 124,939,311 (-)Ensembl
RefSeq Acc Id: NM_026560   ⟹   NP_080836
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394124,812,258 - 124,830,710 (-)NCBI
GRCm384124,918,465 - 124,936,917 (-)ENTREZGENE
MGSCv374124,595,709 - 124,614,161 (-)RGD
Celera4123,240,998 - 123,259,215 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080836   ⟸   NM_026560
- UniProtKB: Q9CS02 (UniProtKB/Swiss-Prot),   Q9CRN4 (UniProtKB/Swiss-Prot),   Q8BHQ9 (UniProtKB/Swiss-Prot),   Q8BHQ5 (UniProtKB/Swiss-Prot),   Q8BHB1 (UniProtKB/Swiss-Prot),   Q6NVD3 (UniProtKB/Swiss-Prot),   B1ARX1 (UniProtKB/Swiss-Prot),   B1ARX0 (UniProtKB/Swiss-Prot),   Q9CTF4 (UniProtKB/Swiss-Prot),   Q8BHX3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000081319   ⟸   ENSMUST00000084296
RefSeq Acc Id: ENSMUSP00000132145   ⟸   ENSMUST00000165281
RefSeq Acc Id: ENSMUSP00000030690   ⟸   ENSMUST00000030690
Protein Domains
Borealin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHX3-F1-model_v2 AlphaFold Q8BHX3 1-289 view protein structure

Promoters
RGD ID:6834741
Promoter ID:MM_KWN:39583
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097892,   NM_026560,   NM_177573,   OTTMUST00000020817,   OTTMUST00000020819,   OTTMUST00000020820,   OTTMUST00000020823,   OTTMUST00000020824,   OTTMUST00000020825,   UC008URK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364124,613,989 - 124,614,489 (+)MPROMDB
RGD ID:6884602
Promoter ID:EPDNEW_M5752
Type:initiation region
Name:Cdca8_1
Description:Mus musculus cell division cycle associated 8 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384124,936,862 - 124,936,922EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1196274 AgrOrtholog
Ensembl Genes ENSMUSG00000028873 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030690.12 UniProtKB/Swiss-Prot
  ENSMUST00000084296 ENTREZGENE
  ENSMUST00000084296.10 UniProtKB/Swiss-Prot
  ENSMUST00000165281.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.560 UniProtKB/Swiss-Prot
  6.10.250.1900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Borealin_C UniProtKB/Swiss-Prot
  Borealin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cell_div_borealin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52276 UniProtKB/Swiss-Prot
MGD MGI:1196274 ENTREZGENE
NCBI Gene 52276 ENTREZGENE
PANTHER AUSTRALIN, ISOFORM A-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BOREALIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Borealin UniProtKB/Swiss-Prot
  Nbl1_Borealin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdca8 PhenoGen
UniProt B1ARX0 ENTREZGENE
  B1ARX1 ENTREZGENE
  BOREA_MOUSE UniProtKB/Swiss-Prot
  E9Q2C7_MOUSE UniProtKB/TrEMBL
  Q6NVD3 ENTREZGENE
  Q8BHB1 ENTREZGENE
  Q8BHQ5 ENTREZGENE
  Q8BHQ9 ENTREZGENE
  Q8BHX3 ENTREZGENE
  Q9CRN4 ENTREZGENE
  Q9CS02 ENTREZGENE
  Q9CTF4 ENTREZGENE
UniProt Secondary B1ARX0 UniProtKB/Swiss-Prot
  B1ARX1 UniProtKB/Swiss-Prot
  Q6NVD3 UniProtKB/Swiss-Prot
  Q8BHB1 UniProtKB/Swiss-Prot
  Q8BHQ5 UniProtKB/Swiss-Prot
  Q8BHQ9 UniProtKB/Swiss-Prot
  Q9CRN4 UniProtKB/Swiss-Prot
  Q9CS02 UniProtKB/Swiss-Prot
  Q9CTF4 UniProtKB/Swiss-Prot