Clstn1 (calsyntenin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Clstn1 (calsyntenin 1) Mus musculus
Analyze
Symbol: Clstn1
Name: calsyntenin 1
RGD ID: 1315088
MGI Page MGI
Description: Predicted to enable X11-like protein binding activity; amyloid-beta binding activity; and kinesin binding activity. Involved in neurotransmitter receptor transport to postsynaptic membrane; regulation of synapse maturation; and vesicle-mediated transport in synapse. Acts upstream of or within positive regulation of synapse assembly; positive regulation of synaptic transmission; and regulation of cell growth. Located in several cellular components, including cell surface; postsynaptic density; and postsynaptic membrane. Is active in glutamatergic synapse and postsynaptic endosome. Is expressed in alimentary system; central nervous system; dorsal root ganglion; olfactory epithelium; and retina. Orthologous to human CLSTN1 (calsyntenin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810034E21Rik; alc-alpha; alcadein alpha; alcadein-alpha; calsyntenin-1; Cst-; Cst-1; Cstn1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,670,536 - 149,733,356 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,670,925 - 149,733,356 (+)EnsemblGRCm39 Ensembl
GRCm384149,585,111 - 149,648,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,586,468 - 149,648,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,960,747 - 149,022,008 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,430,438 - 148,491,699 (+)NCBIMGSCv36mm8
Celera4151,851,767 - 151,914,518 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
acetamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
caffeine  (EXP)
captan  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cobalt dichloride  (ISO)
corosolic acid  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
indometacin  (ISO)
inulin  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
methotrexate  (ISO)
nicotine  (EXP)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
pyrimidifen  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tunicamycin  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The calsyntenins--a family of postsynaptic membrane proteins with distinct neuronal expression patterns. Hintsch G, etal., Mol Cell Neurosci 2002 Nov;21(3):393-409.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11161476   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15146195   PMID:15172686  
PMID:15226823   PMID:15368895   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16760430   PMID:17332754   PMID:17934213   PMID:20925061   PMID:21083616   PMID:21385839  
PMID:21873635   PMID:22905201   PMID:23213470   PMID:24006456   PMID:24613359   PMID:24952961   PMID:24966372   PMID:25406318   PMID:27626380   PMID:28558017   PMID:30550785   PMID:30902970  
PMID:32325033   PMID:32467230   PMID:37585286   PMID:38355793   PMID:39122814  


Genomics

Comparative Map Data
Clstn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,670,536 - 149,733,356 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,670,925 - 149,733,356 (+)EnsemblGRCm39 Ensembl
GRCm384149,585,111 - 149,648,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,586,468 - 149,648,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,960,747 - 149,022,008 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,430,438 - 148,491,699 (+)NCBIMGSCv36mm8
Celera4151,851,767 - 151,914,518 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.91NCBI
CLSTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,728,926 - 9,824,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,728,926 - 9,823,984 (-)EnsemblGRCh38hg38GRCh38
GRCh3719,788,984 - 9,884,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,711,666 - 9,807,137 (-)NCBINCBI36Build 36hg18NCBI36
Build 3419,723,345 - 9,818,816NCBI
Celera18,900,350 - 8,996,174 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,945,184 - 9,040,629 (-)NCBIHuRef
CHM1_119,777,615 - 9,873,126 (-)NCBICHM1_1
T2T-CHM13v2.019,271,709 - 9,367,444 (-)NCBIT2T-CHM13v2.0
Clstn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,314,128 - 165,377,627 (+)NCBIGRCr8
mRatBN7.25160,031,235 - 160,094,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,031,308 - 160,094,583 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,747,935 - 162,811,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,568,273 - 164,630,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,524,636 - 164,586,979 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,533,262 - 166,601,686 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,533,181 - 166,601,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,179,553 - 170,247,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,671,098 - 166,734,907 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,681,501 - 166,744,093 (+)NCBI
Celera5158,300,709 - 158,364,026 (+)NCBICelera
Cytogenetic Map5q36NCBI
Clstn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,780,516 - 3,813,858 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,706,969 - 3,813,858 (+)NCBIChiLan1.0ChiLan1.0
CLSTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,392,800 - 218,492,742 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,038,457 - 217,138,388 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,495,571 - 8,591,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,724,743 - 9,822,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,724,743 - 9,774,760 (-)Ensemblpanpan1.1panPan2
LOC479600
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1562,937,154 - 63,093,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl562,938,511 - 63,093,275 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha562,952,722 - 63,108,259 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,163,686 - 63,319,401 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,163,694 - 63,246,405 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl563,269,946 - 63,296,185 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,185,433 - 63,340,657 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,024,857 - 63,180,154 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,428,607 - 63,584,033 (-)NCBIUU_Cfam_GSD_1.0
LOC101965661
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,211,448 - 33,321,384 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,696,640 - 3,729,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049366233,782,005 - 3,806,619 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,696,686 - 3,729,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLSTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,086,247 - 70,165,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,086,245 - 70,165,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,988,311 - 64,031,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLSTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,943,849 - 122,040,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,944,391 - 122,042,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,876,783 - 26,005,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1198
Count of miRNA genes:545
Interacting mature miRNAs:670
Transcripts:ENSMUST00000039144, ENSMUST00000105691, ENSMUST00000137232, ENSMUST00000151895
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
AW742791  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,648,613 - 149,648,801UniSTSGRCm38
MGSCv374149,022,722 - 149,022,910UniSTSGRCm37
Celera4151,915,232 - 151,915,420UniSTS
Cytogenetic Map4E1UniSTS
Whitehead/MRC_RH41928.76UniSTS
AW537209  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,648,592 - 149,648,706UniSTSGRCm38
MGSCv374149,022,701 - 149,022,815UniSTSGRCm37
Celera4151,915,211 - 151,915,325UniSTS
Cytogenetic Map4E1UniSTS
Whitehead/MRC_RH8209.78UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ289016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW060392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ177451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY231070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB525309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ066764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO433558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX566257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039144   ⟹   ENSMUSP00000036962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,671,095 - 149,732,356 (+)Ensembl
GRCm38.p6 Ensembl4149,586,638 - 149,647,899 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105691   ⟹   ENSMUSP00000101316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,670,925 - 149,733,356 (+)Ensembl
GRCm38.p6 Ensembl4149,586,468 - 149,648,899 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,671,705 - 149,711,782 (+)Ensembl
GRCm38.p6 Ensembl4149,587,248 - 149,627,325 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,711,587 - 149,716,630 (+)Ensembl
GRCm38.p6 Ensembl4149,627,130 - 149,632,173 (+)Ensembl
RefSeq Acc Id: NM_001290989   ⟹   NP_001277918
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,925 - 149,733,356 (+)NCBI
GRCm384149,586,468 - 149,648,899 (+)NCBI
Celera4151,851,767 - 151,915,518 (+)NCBI
Sequence:
RefSeq Acc Id: NM_023051   ⟹   NP_075538
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,925 - 149,733,356 (+)NCBI
GRCm384149,586,468 - 149,648,899 (+)NCBI
MGSCv374148,960,747 - 149,022,008 (+)RGD
Celera4151,851,767 - 151,915,518 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539093   ⟹   XP_006539156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,833 - 149,733,351 (+)NCBI
GRCm384149,586,240 - 149,648,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006539094   ⟹   XP_006539157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,797 - 149,733,351 (+)NCBI
GRCm384149,586,240 - 149,648,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253692   ⟹   XP_030109552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,692,839 - 149,733,356 (+)NCBI
GRCm384149,608,382 - 149,648,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253693   ⟹   XP_030109553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,549 - 149,733,356 (+)NCBI
GRCm384149,585,111 - 149,648,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164295   ⟹   XP_036020188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,670,536 - 149,733,356 (+)NCBI
Sequence:
RefSeq Acc Id: NP_075538   ⟸   NM_023051
- Peptide Label: isoform 1 precursor
- UniProtKB: Q7TS67 (UniProtKB/Swiss-Prot),   Q69ZV9 (UniProtKB/Swiss-Prot),   B2KFP2 (UniProtKB/Swiss-Prot),   B2KFP1 (UniProtKB/Swiss-Prot),   A2A800 (UniProtKB/Swiss-Prot),   Q8K103 (UniProtKB/Swiss-Prot),   Q9EPL2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006539157   ⟸   XM_006539094
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006539156   ⟸   XM_006539093
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001277918   ⟸   NM_001290989
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9EPL2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109553   ⟸   XM_030253693
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030109552   ⟸   XM_030253692
- Peptide Label: isoform X3
Ensembl Acc Id: ENSMUSP00000101316   ⟸   ENSMUST00000105691
Ensembl Acc Id: ENSMUSP00000036962   ⟸   ENSMUST00000039144
RefSeq Acc Id: XP_036020188   ⟸   XM_036164295
- Peptide Label: isoform X3
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPL2-F1-model_v2 AlphaFold Q9EPL2 1-979 view protein structure

Promoters
RGD ID:6835064
Promoter ID:MM_KWN:40891
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000039144,   ENSMUST00000105691,   OTTMUST00000023890
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,961,161 - 148,961,661 (+)MPROMDB
RGD ID:6835063
Promoter ID:MM_KWN:40892
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000023891
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364149,001,421 - 149,001,921 (+)MPROMDB
RGD ID:6847796
Promoter ID:MM_ACW:36656
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:CLSTN1.DSEP07,   CLSTN1.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364149,005,821 - 149,006,321 (+)MPROMDB
RGD ID:6885574
Promoter ID:EPDNEW_M6238
Type:initiation region
Name:Clstn1_1
Description:Mus musculus calsyntenin 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384149,586,474 - 149,586,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1929895 AgrOrtholog
Ensembl Genes ENSMUSG00000039953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000039144 ENTREZGENE
  ENSMUST00000039144.7 UniProtKB/Swiss-Prot
  ENSMUST00000105691 ENTREZGENE
  ENSMUST00000105691.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot
  Cadherins UniProtKB/Swiss-Prot
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  CLSTN_C UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:65945 UniProtKB/Swiss-Prot
MGD MGI:1929895 ENTREZGENE
NCBI Gene 65945 ENTREZGENE
PANTHER CALSYNTENIN-1 UniProtKB/Swiss-Prot
  PTHR14139 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  CLSTN_C UniProtKB/Swiss-Prot
PhenoGen Clstn1 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_2 UniProtKB/Swiss-Prot
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
UniProt A2A800 ENTREZGENE
  B2KFP1 ENTREZGENE
  B2KFP2 ENTREZGENE
  CSTN1_MOUSE UniProtKB/Swiss-Prot
  Q69ZV9 ENTREZGENE
  Q7TS67 ENTREZGENE
  Q8K103 ENTREZGENE
  Q9EPL2 ENTREZGENE
UniProt Secondary A2A800 UniProtKB/Swiss-Prot
  B2KFP1 UniProtKB/Swiss-Prot
  B2KFP2 UniProtKB/Swiss-Prot
  Q69ZV9 UniProtKB/Swiss-Prot
  Q7TS67 UniProtKB/Swiss-Prot
  Q8K103 UniProtKB/Swiss-Prot