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Gene: CLSTN1 (calsyntenin 1) Homo sapiens
Symbol: CLSTN1
Name: calsyntenin 1
Description: Exhibits X11-like protein binding activity; amyloid-beta binding activity; and kinesin binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to localize to the cell surface and postsynaptic membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ALC-ALPHA; alcadein alpha 1; alcadein-alpha; alcalpha1; alcalpha2; alzheimer-related cadherin-like protein; cadherin-related family member 12; calsyntenin-1; CDHR12; CST-1; CSTN1; FLJ32258; KIAA0911; non-classical cadherin XB31alpha; non-classical cadherin XB31alpha1; PIK3CD; XB31alpha
Mus musculus (house mouse) : Clstn1 (calsyntenin 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Clstn1 (calsyntenin 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clstn1 (calsyntenin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLSTN1 (calsyntenin 1)
Canis lupus familiaris (dog) : LOC479600 (beta-catenin-interacting protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clstn1 (calsyntenin 1)
Sus scrofa (pig) : CLSTN1 (calsyntenin 1)
Chlorocebus sabaeus (African green monkey) : CLSTN1 (calsyntenin 1)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38 Ensembl19,728,926 - 9,823,984 (-)EnsemblGRCh38hg38GRCh38
GRCh38 Ensembl19,729,026 - 9,824,526 (-)EnsemblGRCh38hg38GRCh38
GRCh3819,728,926 - 9,824,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3719,789,079 - 9,884,550 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,711,666 - 9,807,137 (-)NCBINCBI36hg18NCBI36
Build 3419,723,345 - 9,818,816NCBI
Celera18,900,350 - 8,996,174 (-)NCBI
Cytogenetic Map1p36.22NCBI
HuRef18,945,184 - 9,040,629 (-)NCBIHuRef
CHM1_119,777,615 - 9,873,160 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences
Clinical Variants

Additional Information

External Database Links
More on CLSTN1
Alliance Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1315087
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2020-03-24
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.