LOC101965661 (beta-catenin-interacting protein 1)

Gene: LOC101965661 (beta-catenin-interacting protein 1) Ictidomys tridecemlineatus

Analyze

Symbol:

LOC101965661 (Ensembl: CLSTN1)

Name:

beta-catenin-interacting protein 1 (Ensembl:calsyntenin 1)

RGD ID:

12593547

Description:

ENCODES a protein that exhibits amyloid-beta binding (inferred); armadillo repeat domain binding (inferred); beta-catenin binding (inferred); INVOLVED IN positive regulation of synapse assembly (ortholog); positive regulation of synaptic transmission (ortholog); regulation of cell growth (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calsyntenin 1; calsyntenin 1, transcript variant X1; calsyntenin 1, transcript variant X2; calsyntenin 1, transcript variant X3; calsyntenin 1, transcript variant X4; calsyntenin-1; catenin beta interacting protein 1; Clstn1; Ctnnbip1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLSTN1 (calsyntenin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Clstn1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Clstn1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clstn1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLSTN1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC479600 (beta-catenin-interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLSTN1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLSTN1 (calsyntenin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	33,211,448 - 33,321,384 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	3,696,640 - 3,729,162 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936623	3,782,005 - 3,806,619 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	3,696,686 - 3,729,017 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

chromosome 1p36 deletion syndrome (ISO)

genetic disease (ISO)

immunodeficiency 14 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (IEA)

branching involved in ureteric bud morphogenesis (IEA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

negative regulation of canonical Wnt signaling pathway (IEA)

negative regulation of mesenchymal cell proliferation (IEA)

negative regulation of protein-containing complex assembly (IEA)

negative regulation of smooth muscle cell proliferation (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

negative regulation of transcription initiation by RNA polymerase II (IEA)

negative regulation of Wnt signaling pathway (IEA)

neurotransmitter receptor transport to postsynaptic membrane (IEA)

positive regulation of monocyte differentiation (IEA)

positive regulation of osteoblast differentiation (IEA)

positive regulation of synapse assembly (IEA,ISO)

positive regulation of synaptic transmission (IEA,ISO)

regulation of cell growth (IEA,ISO)

regulation of synapse maturation (IEA)

regulation of vascular permeability involved in acute inflammatory response (IEA)

vesicle-mediated transport in synapse (IEA)

Cellular Component

beta-catenin destruction complex (IEA)

beta-catenin-ICAT complex (IEA)

cell surface (IEA)

cytoplasm (IEA)

cytosol (IEA)

endoplasmic reticulum membrane (IEA)

extracellular region (IEA)

GABA-ergic synapse (ISO)

glutamatergic synapse (IEA,ISO)

Golgi membrane (IEA)

membrane (IEA)

nucleus (IEA)

postsynaptic density (IEA)

postsynaptic density membrane (ISO)

postsynaptic endosome (IEA,ISO)

postsynaptic membrane (IEA)

spine apparatus membrane (ISO)

synapse (IEA)

Molecular Function

amyloid-beta binding (IEA)

armadillo repeat domain binding (IEA)

beta-catenin binding (IEA)

calcium ion binding (IEA)

kinesin binding (IEA)

protein binding (ISO)

X11-like protein binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC101965661
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	33,211,448 - 33,321,384 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	3,696,640 - 3,729,162 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936623	3,782,005 - 3,806,619 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	3,696,686 - 3,729,017 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLSTN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	9,728,926 - 9,824,526 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	9,728,926 - 9,823,984 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	9,788,984 - 9,884,584 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	9,711,666 - 9,807,137 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	9,723,345 - 9,818,816	NCBI
Celera	1	8,900,350 - 8,996,174 (-)	NCBI		Celera
Cytogenetic Map	1	p36.22	NCBI
HuRef	1	8,945,184 - 9,040,629 (-)	NCBI		HuRef
CHM1_1	1	9,777,615 - 9,873,126 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	9,271,709 - 9,367,444 (-)	NCBI		T2T-CHM13v2.0

Clstn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	149,670,536 - 149,733,356 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	149,670,925 - 149,733,356 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	149,585,111 - 149,648,899 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	149,586,468 - 149,648,899 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	148,960,747 - 149,022,008 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	148,430,438 - 148,491,699 (+)	NCBI		MGSCv36	mm8
Celera	4	151,851,767 - 151,914,518 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	79.91	NCBI

Clstn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	165,314,128 - 165,377,627 (+)	NCBI		GRCr8
mRatBN7.2	5	160,031,235 - 160,094,585 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	160,031,308 - 160,094,583 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	162,747,935 - 162,811,207 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	164,568,273 - 164,630,613 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	164,524,636 - 164,586,979 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	166,533,262 - 166,601,686 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	166,533,181 - 166,601,684 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	170,179,553 - 170,247,835 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	166,671,098 - 166,734,907 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	166,681,501 - 166,744,093 (+)	NCBI
Celera	5	158,300,709 - 158,364,026 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Clstn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	3,780,516 - 3,813,858 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	3,706,969 - 3,813,858 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLSTN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	218,392,800 - 218,492,742 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	217,038,457 - 217,138,388 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	8,495,571 - 8,591,613 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	9,724,743 - 9,822,148 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	9,846,511 - 9,882,049 (-)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	1	9,724,743 - 9,774,760 (-)	Ensembl	panpan1.1		panPan2

LOC479600
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	62,937,154 - 63,093,083 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	62,938,511 - 63,093,275 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	62,952,722 - 63,108,259 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	63,163,686 - 63,319,401 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	63,163,694 - 63,246,405 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	5	63,269,946 - 63,296,185 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	63,185,433 - 63,340,657 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	63,024,857 - 63,180,154 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	63,428,607 - 63,584,033 (-)	NCBI		UU_Cfam_GSD_1.0

CLSTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	70,086,247 - 70,165,174 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	70,086,245 - 70,165,240 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	63,988,311 - 64,031,145 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLSTN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	121,943,849 - 122,040,027 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	121,944,391 - 122,042,474 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	25,876,783 - 26,005,018 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001043 ⟹ ENSSTOP00000000932

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936623	3,696,640 - 3,729,162 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000028710 ⟹ ENSSTOP00000020144

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936623	3,782,005 - 3,806,619 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033397 ⟹ ENSSTOP00000031372

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936623	3,696,640 - 3,729,162 (-)	Ensembl

RefSeq Acc Id:

XM_005334757 ⟹ XP_005334814

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,297,110 - 33,321,384 (-)	NCBI

Sequence:

show sequence

GGCGGCACCTTCTTATTTCTCCCCAGCTACAGCCTTCCCTAACAGTTGAGCACCTGTTTGCCTG
AAGTGAATTTCCAGAAGCAGGAGTCCCAAGAGCTGGGCCAGGGGGATGAACCGTGAAGGAGCAC
CCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGAGGAA
GATGGGATCCAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTACGCGGGAGTGGTCAGC
AGCCAGCTCAGCCAGCTGCCACAGCACTCTATCGACCAGGGTGCCGAGGATGTGGTGATGGCGT
TTTCCAGGTCGGAGACGGAGGACCGGAGGCAATAGCTGTAAACTCCTTGGAACACCCTGGAAGC
TGTCAAGGGCCAAGAGATCTGTGTGGCTCCTGGGCTGGCTGAGTGGCAGCAGACCACCATCCCT
CCCTCCCCCTACTCCTACCCCTCAGCCCCCCAACAGCCATTGCCACAGCCGCTCAGCAGGGCTG
GCATCAAGGGAGACACCAGTGGTGCGTTTTCGATTGGCTTAAAGGGATGGACTCGTGATTGGCT
TCAGGAAGAAACCTTTTTATTTTTAAACCTTGACCAATGGAAACCTTTTATTTTTATTTCTGAC
TCTTATTTTTTAAAAAATTTGCGCCTCGGTATCAGGCTTCCCAGGAAGCTCTCCGGGCTCTGGT
GCTTTATTTAGGTCATATTTTAGAAATGTGAAGAGGCCCAATTGGCTGCTTAAACTGGAAAAGG
ATTATGATTGGTTGACAGTGGGAAATGGTCTTTTCTTTGATTGGCTGCAGGTGTCCTGCTGGTA
TCAACAGCTTCTTTATTCTCAATGCAGAAAACAGGGTTTGGGACATTGGTTGTTATATTTGACT
TGAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAACCAAATGCGCTTTGCAATGTTTATTACACAA
ACAGCTTGCTGCTGC

hide sequence

RefSeq Acc Id:

XM_021732844 ⟹ XP_021588519

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,212,863 - 33,243,779 (-)	NCBI
SpeTri2.0	NW_004936623	3,696,686 - 3,729,017 (-)	NCBI

Sequence:

show sequence

AGATGCCTGGAGAGGATGCTGAGGCCCAGCAGAGTCAACAAACACAAGCCGTGGCTGGAGCCCA
CCTACCATGGCATCGTCACCGAGAACGACAACACGGTGCTGCTTGATCCCCCGCTGATCGCCCT
GGATAAAGATGCTCCTCTGCATTTTGCAGAGAGTTTTGAGGTGACAGTCACCAAAGAAGGTGAG
ATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCAGTAGTAGTGGATAAATCCA
CGGGTGAGGGAATAATCCGCTCGAAAGAGAAACTGGACTGTGAGCTGCAGAAGGACTACACGTT
CACCATCCAGGCCTACGACTGCGGGAAGGGCCCCGACGGCACTGGCGTGAAAAAGTCTCATAAA
GCAACTGTCCACATTCAGGTGAACGATGTGAATGAGTACGCGCCCGTGTTCAAGGAGAAGTCCT
ACAAAGCCACAGCCACGGAGGGGAAGCAGTACGACAGCATCCTGAGGGTGGAGGCCGTGGATGC
AGACTGCTCCCCGCAGTTCAGCCAGATCTGCAGCTATGAGATCGTCACCCCGGATGTGCCATTC
ACCGTGGACAAGGATGGTTATATAAAAAACACAGAGAAGCTCAACTACGGCAAGGAGCGTCAGT
ATAAGCTGACCGTCACAGCCTATGATTGTGGGAAGAAAAGAGCCACGGAAGATGCTCTGGTGAA
GATCAGCATCAAGCCCACCTGCACCCCTGGGTGGCAAGGCTGGAGTGACCGGGTGGAGTACGAG
CCTGGCACGGGCACCTTGGCTGTGTTCCCGAACATCCACCTGGAGACGTGTGCTGCGCCGGTTG
CCTCCGTGCAGGCCACTGTGGAGCTGGAGACCAGCCATATCGGCAAGGGCTGCGACCGAGACAC
CTACTCTGAGAAGTCCCTTCACCGGCTCTGTGGGGCTGCCACTGGCACTGCCGAGTTGCTCCCT
GCCCCCAGCAGCTCAGTGAACTGGACCATGGGCCTCCCCACGGACAACGGCCACGACAGCGACC
AGGTGTTTGAGTTCAACGGCACCCAGGCAGTCAGGGTCCCCGACGGCCTTGTTTCTCTCAGCCC
CAGAGAGCCCTTCACCATCTCCGTGTGGATGAGGCACGGGCCTTTTGGCAGGAGGAAGGAGACG
ATTCTTTGCAGTTCAGACAAAACAGATATGAACCGACACCATTATTCCCTGTATGTCCACGGGT
GCCGGCTGGTTTTCCTCCTCCGCCAGGATCCTGCTGAGGAGAGGAAGTATAAACCTGCAGAATT
TCACTGGAAGTTGAATCAGGTCTGTGATGAGGAGTGGCACCACTTTGTCCTCAACGTGGAGTTC
CCGAGCGTGGCTCTCTATGTGGATGGTGTCTCTCACGAGCCCTTCTCTGTGACCGAGGATTACC
CGCTCCATCCATCCAAGATAGAAACGCAGCTTGTGGTCGGGGCTTGCTGGCAAGAGTATTCAGG
AGTTGAAAATGACAATGAGACTGAGCCTGTGACTATGGCCTCTGCAGGTGGCGACTTACACATG
ACCCAGTTTTTCCGAGGTAACCTGGCTGGGCTAACAGTACGTTCTGGGAAACTCGCAGATAAGA
AGGTGATTGACTGTCTGTATACCTGCAAAGAGGGGCTAGACCTACAGGTCCCTGAAGACGTCGG
CAGAGGCGTGCAGATCCAAGTAAGCCCCAGCCAGTCGGCCTTGACCTTGGAAGGAGACGACATC
TCGGAGCTGGATAAAGCTCTGCAGCATGTCTCCTACCTGAACTCACGGCAGTTCCCCACGCCAG
GCATCCGCAGACTCAAAATCACCAGCACAGTCAAGTGTTTTAATGAGGCGCCCTGCATTGCCAT
CCCCCCAGTCGAAGGCTACGTCATGGTTTTGCAGCCGGAAGAGCCCAGGATCAGCCTGAGTGGT
GTCCACCGCTTTGCCCGAGCGGCTTCTGAGTTTGAGGGCTCAGAAGGGGTTTTCCTGTTCCCTG
AGCTTCGAATCATCAGCACAATCACACGAGAAGTGGAGCCCGAGGGGGATGGCCCTGAGGACCC
CACAGTTCAAGAGTCCCTGGTGTCTGAAGAGATCGTGCATGACCTGGACACCTGTGAGGTCACG
GTGGAGGGAGAGGAACTGAACCCGGAGCAGGAGAGCCTGGAGGTGGACACAGCCCGCCTGCAGC
AGAAGGGCATCGAAGTGAGCCGCTCTGACCTGGGCATGGTCTTCACAGGTGTGGACACCATGGC
CAGCTATGAAGAGGTTTTGCACCTGCTGCGCTACCGGAACTGGCATACCAGGTCACTGCTCGAC
CGGAAGTTCAAGCTCATCTGCTCTGAGCTAAATGGCCGCTACCTCAGCAATGAATTTAAGGTGG
AGGTGAATGTGATCCACACCGCCAACCCTGTGGAGCACGCCAGCCACATGGCCGCCCAGCCACA
GTTTGTTCACCCAGAGCATCGGTCCTTTGTTGACCTGTCAGGCCACAACCTGGCCAATTCTCAC
CCATTTGCAGTCGTCCCGAGCACCGCCACTGTGGTGATTGTGGTCTGCGTCAGCTTCCTGGTGT
TCATGATCATCCTGGGGGTGTTTCGGATCCGGGCTGCACATCAGCGAACCATGCGGGACCAGGA
CACAGGGAAGGAGAATGAGATGGACTGGGATGACTCTGCCTTGACCATCACGGTGAACCCCATG
GAGACCTACGAGGACCAGCACAGCAGTGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGA
GCGAGGATGGAGAGGAGGAGGAAGACATCACCAGCGCTGAGTCGGAGAGCAGTGAGGAGGAGGA
GGGTGGCCCTGGGGACGGCCAGAACGCCAACCGGCAGCAGCAGCTGGAGTGGGACGACTCCACG
CTCAGCTACTGAATGCACCCCGGGCGCCTGTGTCCCTGCCTCAGAACACCTGCCACCCTCTCCC
AGCCCGTGGGTCCTCGATGTACAAAGTCACTTTGGCCAGCAGGTCTGCAGACCCCCTGTTGCTG
ATCGTCCTTCCGTGCCCGTGCCCGGTGTGTAGGACTGTAGGCTCCCGCCCTCTGCCCATCCCCG
CTGGATCGCTCTCCCCTAAGCCAGGAGCTGGCCCTTCCTCCCTGCCGCCTCCTGCCGGCACAGA
GGCCACAGCACCACAGGCCCCTGCCAGCCGGCGAGACGCCCACCTCGCACCTCCAGAAGAGTTG
CCGTGAAGGACTGTAGCTGACAGAGGTGAAACGCTCCTTCCCACCTGGAAATCATTTTTTCTTT
TTAAAAAAAAGTTTTTATTTTTTCCAAACCTAGTGCATGTATAAAATGGCAGAATGGGTTAATA
TGTAGATGATCAACTGACTTTTTAATATTTTGTAAATAAATTGGGATTCTCTGTGTCCTTTGTG
CTAGTGTAGTCCAGGACTGGGACGTAAAGTGGAGGGACCCTGGCTCCTGTTCCCTCCCCCTCAG
GAAACCAGGATGGGGAGGCCTGCCCACTCTGGCCAGGGCCTGGGGCTGTAGGCTGTGGCTTGCT
GCTTGGGCCCAGGTCAGGGGTTTGTGTTTGAAGTGTGGAAATAGCCAGGTCTTTTCTTTGGGAT
TCTGCCCACTTCTAGCATGGTGCTGGGGGTGGGAACTGTGGGGTCCCCGGCCTCTTGTGCATTC
CCCAGGACCAGCAGCTTCCTTGGCGTCACCCGGGCCCATGTGCAGCTGTAACTGATGCTTCATA
ACTGCGCATTGCCGGCTGGGGAAGCTCTGTGCGTCATGGACACTGATGGCCATGGTGCAGATCA
TTGGACCACTTGGTTTGGAGACAGCAGCGGTTCCCTGAGGGATCTGCACTCAGAATGGAGGAAG
GGAAACCCTGAGGCTTCAAGACAGACTCTAGAAAGTTCCAAAAGTCTGCATCTACCCCACCCCA
GCCCCTGGATGCCGCTGTGTCGGGGTCAGACGCTCACTCCAGGAGCCAGGGGTCCTGCTGCTCT
GCTCTGGGCAAGGCGAAGGCCAGCAAGCAGTTTGGTCTGGAGCCACACAGCACTTTGCTCTTGT
GTACATGTCAGATGCCAGACTGTAAGCCTGGGGTCGTTCTGCTTGCTATCTGTGTCCTCACTGC
TAGTTTTAAGGACACTGATGGCTGGGCTGTTGTGTGGCCGCCCTTCCACGTCCAGTCCCTGTAG
CTGCTCTGTTTAGACAACGGTAGATGCTAACACAGAGAGGGACATCCTCATACAGTCTGTAGCG
CTGCGGTGTCCCCTCCCAGATGTGTATATTGATGCTAGGTCAGAAAGTGTATACACTACAATAA
AGTTCTGGTTCTAACTCCA

hide sequence

RefSeq Acc Id:

XM_040287896 ⟹ XP_040143830

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,211,448 - 33,321,384 (-)	NCBI

RefSeq Acc Id:

XM_040287897 ⟹ XP_040143831

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,212,809 - 33,321,384 (-)	NCBI

RefSeq Acc Id:

XM_040287898 ⟹ XP_040143832

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,212,801 - 33,321,384 (-)	NCBI

RefSeq Acc Id:

XM_040287899 ⟹ XP_040143833

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	33,212,863 - 33,321,384 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005334814	(Get FASTA)	NCBI Sequence Viewer
	XP_021588519	(Get FASTA)	NCBI Sequence Viewer
	XP_040143830	(Get FASTA)	NCBI Sequence Viewer
	XP_040143831	(Get FASTA)	NCBI Sequence Viewer
	XP_040143832	(Get FASTA)	NCBI Sequence Viewer
	XP_040143833	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000932.3
	ENSSTOP00000020144.1
	ENSSTOP00000031372.1
GenBank Protein	KAG3282083	(Get FASTA)	NCBI Sequence Viewer
	KAG3282084	(Get FASTA)	NCBI Sequence Viewer
	KAG3282085	(Get FASTA)	NCBI Sequence Viewer
	KAG3282086	(Get FASTA)	NCBI Sequence Viewer
	KAG3282087	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021588519 ⟸ XM_021732844
- Peptide Label:	isoform X4
- UniProtKB:	I3LXV1 (UniProtKB/TrEMBL), A0A287DCS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRPSRVNKHKPWLEPTYHGIVTENDNTVLLDPPLIALDKDAPLHFAESFEVTVTKEGEICGFK IHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQAYDCGKGPDGTGVKKSHKATVHI QVNDVNEYAPVFKEKSYKATATEGKQYDSILRVEAVDADCSPQFSQICSYEIVTPDVPFTVDKD GYIKNTEKLNYGKERQYKLTVTAYDCGKKRATEDALVKISIKPTCTPGWQGWSDRVEYEPGTGT LAVFPNIHLETCAAPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAATGTAELLPAPSSS VNWTMGLPTDNGHDSDQVFEFNGTQAVRVPDGLVSLSPREPFTISVWMRHGPFGRRKETILCSS DKTDMNRHHYSLYVHGCRLVFLLRQDPAEERKYKPAEFHWKLNQVCDEEWHHFVLNVEFPSVAL YVDGVSHEPFSVTEDYPLHPSKIETQLVVGACWQEYSGVENDNETEPVTMASAGGDLHMTQFFR GNLAGLTVRSGKLADKKVIDCLYTCKEGLDLQVPEDVGRGVQIQVSPSQSALTLEGDDISELDK ALQHVSYLNSRQFPTPGIRRLKITSTVKCFNEAPCIAIPPVEGYVMVLQPEEPRISLSGVHRFA RAASEFEGSEGVFLFPELRIISTITREVEPEGDGPEDPTVQESLVSEEIVHDLDTCEVTVEGEE LNPEQESLEVDTARLQQKGIEVSRSDLGMVFTGVDTMASYEEVLHLLRYRNWHTRSLLDRKFKL ICSELNGRYLSNEFKVEVNVIHTANPVEHASHMAAQPQFVHPEHRSFVDLSGHNLANSHPFAVV PSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITVNPMETYED QHSSEEEEEEEEEEEESEDGEEEEDITSAESESSEEEEGGPGDGQNANRQQQLEWDDSTLSY hide sequence

RefSeq Acc Id:	XP_040143830 ⟸ XM_040287896
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DCS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143832 ⟸ XM_040287898
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DCS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143831 ⟸ XM_040287897
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DCS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143833 ⟸ XM_040287899
- Peptide Label:	isoform X5
- UniProtKB:	A0A287DCS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_005334814 ⟸ XM_005334757
- Peptide Label:	isoform X6
- UniProtKB:	I3N6Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSIDQGA EDVVMAFSRSETEDRRQ hide sequence

RefSeq Acc Id:

ENSSTOP00000031372 ⟸ ENSSTOT00000033397

RefSeq Acc Id:

ENSSTOP00000020144 ⟸ ENSSTOT00000028710

RefSeq Acc Id:

ENSSTOP00000000932 ⟸ ENSSTOT00000001043

Protein Domains

Beta-catenin-interacting ICAT Cadherin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001039	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00000023683	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001043.3	UniProtKB/TrEMBL
	ENSSTOT00000028710.2	UniProtKB/TrEMBL
	ENSSTOT00000033397.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.490	UniProtKB/TrEMBL
	2.60.120.200	UniProtKB/TrEMBL
	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Calsyntenin	UniProtKB/TrEMBL
	CLSTN_C	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	CTNNBIP1	UniProtKB/TrEMBL
	ICAT_dom	UniProtKB/TrEMBL
	ICAT_sf	UniProtKB/TrEMBL
NCBI Gene	Clstn1	ENTREZGENE
PANTHER	BETA-CATENIN-INTERACTING PROTEIN 1	UniProtKB/TrEMBL
	CALSYNTENIN-1	UniProtKB/TrEMBL
	PTHR14139	UniProtKB/TrEMBL
	PTHR47142	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	CLSTN_C	UniProtKB/TrEMBL
	ICAT	UniProtKB/TrEMBL
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
	SSF49899	UniProtKB/TrEMBL
	SSF81730	UniProtKB/TrEMBL
UniProt	A0A287DCS9	ENTREZGENE, UniProtKB/TrEMBL
	I3LXV1	ENTREZGENE, UniProtKB/TrEMBL
	I3N6Z8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-26	LOC101965661	beta-catenin-interacting protein 1	Clstn1	calsyntenin 1	Symbol and/or name change	5135510	APPROVED
2021-03-25	Clstn1	calsyntenin 1	Ctnnbip1	catenin beta interacting protein 1	Data merged from RGD:12699806	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar