4930455G09Rik (RIKEN cDNA 4930455G09 gene) - Rat Genome Database

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Gene: 4930455G09Rik (RIKEN cDNA 4930455G09 gene) Mus musculus
Analyze
Symbol: 4930455G09Rik
Name: RIKEN cDNA 4930455G09 gene
RGD ID: 1609117
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC78917; uncharacterized protein LOC78917
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,745,209 - 141,756,306 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,731,071 - 141,756,963 (+)EnsemblGRCm39 Ensembl
GRCm384142,017,898 - 142,028,995 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4142,017,898 - 142,028,996 (+)EnsemblGRCm38mm10GRCm38
Celera4143,834,006 - 143,845,338 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map475.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:102
Interacting mature miRNAs:104
Transcripts:ENSMUST00000126231
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000126231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,140 - 141,756,963 (+)Ensembl
GRCm38.p6 Ensembl4142,017,898 - 142,028,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,731,071 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,742,091 - 141,756,621 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,742,117 - 141,756,616 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,742,313 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,324 - 141,756,960 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,295 - 141,756,621 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,206 - 141,756,621 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,359 - 141,756,621 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,197 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,213 - 141,756,306 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,295 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,306 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,313 - 141,756,309 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,324 - 141,756,315 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,341 - 141,756,310 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,381 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,415 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,337 - 141,756,221 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,746,180 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,323 - 141,748,163 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,337 - 141,748,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,753,817 - 141,756,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,325 - 141,746,021 (+)Ensembl
Ensembl Acc Id: ENSMUST00000350829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,745,454 - 141,746,021 (+)Ensembl
RefSeq Acc Id: NR_131014
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394141,745,209 - 141,756,306 (+)NCBI
GRCm384142,017,898 - 142,028,995 (+)NCBI
Sequence:
Promoters
RGD ID:6885358
Promoter ID:EPDNEW_M6130
Type:initiation region
Name:4930455G09Rik_1
Description:Mus musculus RIKEN cDNA 4930455G09 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384142,017,985 - 142,018,045EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085761 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000350816 ENTREZGENE
MGD MGI:1926167 ENTREZGENE
NCBI Gene 78917 ENTREZGENE
PhenoGen 4930455G09Rik PhenoGen
RNAcentral URS0000812124 RNACentral