Advanced Search (OLGA)

Gene: 4930455G09Rik (RIKEN cDNA 4930455G09 gene) Mus musculus

Subscribe to Updates

Analyze

Symbol:

4930455G09Rik

Name:

RIKEN cDNA 4930455G09 gene

RGD ID:

1609117

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC78917; uncharacterized protein LOC78917

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,745,209 - 141,756,306 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,731,071 - 141,756,963 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	142,017,898 - 142,028,995 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	142,017,898 - 142,028,996 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	4	143,834,006 - 143,845,338 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	75.11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930455G09Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930455G09Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930455G09Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:24200680	PMID:24316575	PMID:27899360

Variants in 4930455G09Rik
797 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	108
Count of miRNA genes:	102
Interacting mature miRNAs:	104
Transcripts:	ENSMUST00000126231
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301267	Bcmd2_m	B cell maturation defect 2 (mouse)			Not determined		4	133154678	150789451	Mouse
4142139	Adip12_m	adiposity 12 (mouse)			Not determined		4	124621281	156860686	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112824389	146824389	Mouse
1301525	Lmb1_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		4	124264957	150676858	Mouse
14746982	Manh56_m	mandible shape 56 (mouse)					4	117815917	151815917	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111009051	145009280	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107791564	141791756	Mouse
1302149	Tlsr2_m	thymic lymphoma suppressor region 2 (mouse)			Not determined		4	124264957	142230960	Mouse
1300874	Gasa2_m	gastritis type A susceptibility locus 2 (mouse)			Not determined		4	133010494	156860686	Mouse
27226757	Femd1_m	femur midshaft diameter 1, 5 week (mouse)					4	123993793	144326570	Mouse
1300621	Tpnr1_m	thermal pain response 1 (mouse)			Not determined		4	125230872	156860686	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116154678	150154782	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300917	Gasa1_m	gastritis type A susceptibility locus 1 (mouse)			Not determined		4	124055093	142438020	Mouse
1300537	Ap3q_m	alcohol preference 3 QTL (mouse)			Not determined		4	134654451	156860686	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
10412210	Cypr6_m	cytokine production 6 (mouse)			Not determined		4	120617848	154617995	Mouse
1302078	Sluc21_m	susceptibility to lung cancer 21 (mouse)			Not determined		4	117401141	151401275	Mouse
10045620	Heal22_m	wound healing/regeneration 22 (mouse)			Not determined		4	125230872	156860686	Mouse
4142481	Gct1_m	granulosa cell tumorigenesis 1 (mouse)			Not determined		4	127784226	156860686	Mouse
13503348	Bntq18_m	bone traits QTL 18 (mouse)					4	120617848	154617995	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
4141184	Tb2r1_m	TGF-beta2 responsiveness 1 (mouse)			Not determined			137674005	150676858	Mouse
1300780	Cocrb16_m	cocaine related behavior 16 (mouse)			Not determined		4	138943725	156860686	Mouse
4142077	Ignpq2_m	IgA nephropathy QTL 2 (mouse)			Not determined		4	133676733	156860686	Mouse
4141180	Ssic1_m	susceptibility to small intestinal cancer 1 (mouse)			Not determined			120674005	154674151	Mouse
1301584	Lrdg2_m	light induced retinal degeneration 2 (mouse)			Not determined		4	129465811	151654550	Mouse
1302102	Bis1_m	beta-carboline-induced seizures 1 (mouse)			Not determined		4	119864433	153864536	Mouse
10043996	Gct5_m	granulosa cell tumorigenesis 5 (mouse)			Not determined		4	127784226	156860686	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
10043985	Stheal12_m	soft tissue heal 12 (mouse)			Not determined		4	121342649	155342753	Mouse
1357534	Cinda3_m	cytokine induced activation 3 (mouse)			Not determined		4	137617848	142289472	Mouse
1301982	Pltiq1_m	phospholipid transfer protein inducibility QTL 1 (mouse)			Not determined		4	124621281	156860686	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
1300803	Sluc6_m	susceptibility to lung cancer 6 (mouse)			Not determined		4	120674005	154674151	Mouse
4142061	Chlq16_m	circulating hormone level QTL 16 (mouse)			Not determined		4	121342649	155342753	Mouse
1300933	Cdcs9_m	cytokine deficiency colitis susceptibility 9 (mouse)			Not determined		4	125230872	156860686	Mouse
1300553	Athsq1_m	atherosclerosis susceptibility QTL 1 (mouse)			Not determined		4	137617848	151654550	Mouse
1301964	Bw8q2_m	body weight at 8 weeks QTL 2 (mouse)			Not determined		4	119864433	153864536	Mouse
1301452	Elsgp1_m	elevated serum gp70 1 (mouse)			Not determined		4	121342649	155342753	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108477692	142477692	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108477692	142477692	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108477692	142477692	Mouse
1301108	Scon2_m	sucrose consumption 2 (mouse)			Not determined		4	134654451	156860686	Mouse
1300858	Tafat_m	tally ho associated mesenteric fat pad weight (mouse)			Not determined		4	124621281	156860686	Mouse
10755531	Lymph3_m	lymphocyte differential 3 (mouse)					4	124553483	156860686	Mouse
11533916	Mts1_m	mammary tumor susceptibility 1 (mouse)					4	125289325	156860686	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111009051	145009280	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112523489	146523489	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112182386	146182386	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_131014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK019631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL663037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY468028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000126231

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,140 - 141,756,963 (+)	Ensembl
GRCm38.p6 Ensembl	4	142,017,898 - 142,028,996 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350806

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,731,071 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350807

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,742,091 - 141,756,621 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350808

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,742,117 - 141,756,616 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350809

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,742,313 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350810

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,324 - 141,756,960 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350811

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,295 - 141,756,621 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350812

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,206 - 141,756,621 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350813

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,359 - 141,756,621 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350814

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,197 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350815

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,213 - 141,756,306 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350816

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,295 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350817

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,306 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350818

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,313 - 141,756,309 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350819

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,324 - 141,756,315 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350820

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,341 - 141,756,310 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350821

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,381 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350822

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,415 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350823

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,337 - 141,756,221 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350824

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,746,180 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350825

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,323 - 141,748,163 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350826

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,337 - 141,748,162 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350827

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,753,817 - 141,756,311 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350828

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,325 - 141,746,021 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000350829

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	141,745,454 - 141,746,021 (+)	Ensembl

RefSeq Acc Id:

NR_131014

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	141,745,209 - 141,756,306 (+)	NCBI
GRCm38	4	142,017,898 - 142,028,995 (+)	NCBI

Sequence:

show sequence

ACTCACAGAAGCTATGGGCCCCAAGGGAAGGAGGCGTGGGGACTGTGTGCCCAGGGAGATTAGGAAGTGAGAACAGATAACTCGCCCACTTGTGACCGATGAGTGAGCGACGCCCAGTCCACTCGGGC
ACACAGTGGCTCTCTGAGGAACGTTTCATGGAGGTGCCCTTGTCTCCGTACAGAAGATTCTAGAAGGCTTTGGGTGTGTGTCTGTCAGTGGCAGAGCCGCTTCAGACGCTGGTGACTGTTTTGGGCTG
GGCACTGTCGTCGAAGGTATGTTCAGCTATGACAGCCCAAGGACAGCTACTGAGGACATTTGCCTGCTTTTGAAGCTGCACACCGTTTCTGAATTCTCCGCAGCGCTGAGGCTTATCTCCGGGCGCCA
CACCGTCTTATCTGAAGTTTTCTTCCTTTCGTCTTCCTGAGAAGATTTATAACCCAGAAAAGCCACGCCATGATTTCTGCTTCCAAAATTGTATTCTGGTTGTTTTATTTTGCTCCCTGTCCTCCGTT
GGCTTCGAGGATGCTGTTGAGCAATCTACAAATTCCCAGAGTGTCTGTGACTTTGTAGGCACCGTTGGCCGTTATCTTTGCTGTGTCTTTTATAGAATGTTCATAAATTCCAGGTTA

hide sequence

RGD ID:

6885358

Promoter ID:

EPDNEW_M6130

Type:

initiation region

Name:

4930455G09Rik_1

Description:

Mus musculus RIKEN cDNA 4930455G09 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	142,017,985 - 142,018,045	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000085761	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000350816	ENTREZGENE
MGD	MGI:1926167	ENTREZGENE
NCBI Gene	78917	ENTREZGENE
PhenoGen	4930455G09Rik	PhenoGen
RNAcentral	URS0000812124	RNACentral
	URS00025E8449	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message