Hp1bp3 (heterochromatin protein 1, binding protein 3) - Rat Genome Database

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Gene: Hp1bp3 (heterochromatin protein 1, binding protein 3) Mus musculus
Analyze
Symbol: Hp1bp3
Name: heterochromatin protein 1, binding protein 3
RGD ID: 1332167
MGI Page MGI
Description: Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be involved in several processes, including cellular response to hypoxia; heterochromatin organization; and regulation of nucleus size. Predicted to be located in nuclear speck. Predicted to be part of nucleosome. Predicted to be active in chromosome and nucleus. Orthologous to human HP1BP3 (heterochromatin protein 1 binding protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterochromatin protein 1-binding protein 3; Hp1bp; Hp1bp74; MGC28927
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394137,943,781 - 137,971,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4137,943,607 - 137,971,994 (+)EnsemblGRCm39 Ensembl
GRCm384138,216,470 - 138,244,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,216,296 - 138,244,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv374137,772,542 - 137,799,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,488,738 - 137,515,236 (+)NCBIMGSCv36mm8
Celera4139,993,842 - 140,021,475 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,ISO,ISS)
nuclear speck  (ISO)
nucleosome  (IEA)
nucleus  (IBA,ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors. Le Douarin B, etal., EMBO J 1996 Dec 2;15(23):6701-15.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14691545   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17296600   PMID:18799693   PMID:21677750   PMID:21873635   PMID:23086144   PMID:23665500   PMID:25662603   PMID:26167872   PMID:26336360   PMID:26402843   PMID:26976970   PMID:27434733  
PMID:27460150   PMID:27470444   PMID:28378742   PMID:28712289   PMID:30457570   PMID:30549219   PMID:30562941   PMID:30783098   PMID:30973865   PMID:32212159   PMID:32325033   PMID:36114006  
PMID:37142655   PMID:38355793  


Genomics

Comparative Map Data
Hp1bp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394137,943,781 - 137,971,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4137,943,607 - 137,971,994 (+)EnsemblGRCm39 Ensembl
GRCm384138,216,470 - 138,244,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,216,296 - 138,244,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv374137,772,542 - 137,799,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,488,738 - 137,515,236 (+)NCBIMGSCv36mm8
Celera4139,993,842 - 140,021,475 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.03NCBI
HP1BP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,740,266 - 20,787,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,740,266 - 20,787,323 (-)EnsemblGRCh38hg38GRCh38
GRCh37121,066,759 - 21,113,800 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,941,758 - 20,985,768 (-)NCBINCBI36Build 36hg18NCBI36
Celera119,394,945 - 19,438,922 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef119,314,898 - 19,359,180 (-)NCBIHuRef
CHM1_1121,179,997 - 21,223,982 (-)NCBICHM1_1
T2T-CHM13v2.0120,566,829 - 20,613,865 (-)NCBIT2T-CHM13v2.0
Hp1bp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85155,719,109 - 155,746,329 (+)NCBIGRCr8
mRatBN7.25150,435,781 - 150,463,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,433,740 - 150,463,000 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,131,550 - 153,158,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05154,905,830 - 154,933,084 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05154,887,855 - 154,915,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05156,581,732 - 156,609,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,581,732 - 156,609,059 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,331,116 - 160,358,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45156,996,670 - 157,024,045 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,006,708 - 157,034,082 (+)NCBI
Celera5148,829,677 - 148,857,023 (+)NCBICelera
Cytogenetic Map5q36NCBI
Hp1bp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554521,270,658 - 1,308,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554521,271,133 - 1,308,167 (-)NCBIChiLan1.0ChiLan1.0
HP1BP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,337,978 - 206,382,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11205,449,905 - 205,494,800 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,691,173 - 19,736,062 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,736,259 - 20,780,690 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,736,259 - 20,780,690 (-)Ensemblpanpan1.1panPan2
HP1BP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,164,239 - 78,203,032 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,164,173 - 78,201,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,678,071 - 74,717,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,732,908 - 78,772,521 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,732,911 - 78,774,761 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,549,549 - 75,588,868 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,562,054 - 76,601,598 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,564,689 - 77,604,115 (+)NCBIUU_Cfam_GSD_1.0
Hp1bp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,841,180 - 40,874,916 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364746,665,507 - 6,700,152 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364746,665,989 - 6,699,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HP1BP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,975,555 - 79,007,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,975,551 - 79,007,921 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2673,219,226 - 73,249,015 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HP1BP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120111,766,259 - 111,815,233 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20111,772,973 - 111,818,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660334,419,797 - 4,466,087 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hp1bp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247645,760,002 - 5,794,705 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5579
Count of miRNA genes:829
Interacting mature miRNAs:1113
Transcripts:ENSMUST00000030541, ENSMUST00000097836, ENSMUST00000105825, ENSMUST00000105826, ENSMUST00000105827, ENSMUST00000124305, ENSMUST00000130071, ENSMUST00000137851, ENSMUST00000137865, ENSMUST00000142420, ENSMUST00000148681, ENSMUST00000154581, ENSMUST00000155344, ENSMUST00000165861
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12050091Shm2_msperm head morphology 2 (mouse)4136876000138342753Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse

Markers in Region
UniSTS:235074  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384138,216,007 - 138,216,304UniSTSGRCm38
MGSCv374137,771,922 - 137,772,219UniSTSGRCm37
Celera4139,993,003 - 139,993,300UniSTS
Cytogenetic Map4D3UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE994919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI133236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU612149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY130345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA321191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF423826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN670198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030541   ⟹   ENSMUSP00000030541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,938 - 137,970,481 (+)Ensembl
GRCm38.p6 Ensembl4138,216,627 - 138,243,170 (+)Ensembl
Ensembl Acc Id: ENSMUST00000097836   ⟹   ENSMUSP00000095447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,938 - 137,970,481 (+)Ensembl
GRCm38.p6 Ensembl4138,216,627 - 138,243,170 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105825   ⟹   ENSMUSP00000101451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,946 - 137,971,994 (+)Ensembl
GRCm38.p6 Ensembl4138,216,635 - 138,244,683 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105826   ⟹   ENSMUSP00000101452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,938 - 137,970,459 (+)Ensembl
GRCm38.p6 Ensembl4138,216,627 - 138,243,148 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105827   ⟹   ENSMUSP00000101453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,607 - 137,971,994 (+)Ensembl
GRCm38.p6 Ensembl4138,216,296 - 138,244,683 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124305   ⟹   ENSMUSP00000120587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,945 - 137,956,086 (+)Ensembl
GRCm38.p6 Ensembl4138,216,634 - 138,228,775 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130071   ⟹   ENSMUSP00000123467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,944,605 - 137,950,861 (+)Ensembl
GRCm38.p6 Ensembl4138,217,294 - 138,223,550 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137851   ⟹   ENSMUSP00000118913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,944,438 - 137,957,068 (+)Ensembl
GRCm38.p6 Ensembl4138,217,127 - 138,229,757 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137865   ⟹   ENSMUSP00000117216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,937 - 137,953,334 (+)Ensembl
GRCm38.p6 Ensembl4138,216,626 - 138,226,023 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,943,911 - 137,948,968 (+)Ensembl
GRCm38.p6 Ensembl4138,216,600 - 138,221,657 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148681   ⟹   ENSMUSP00000122005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,955,894 - 137,968,046 (+)Ensembl
GRCm38.p6 Ensembl4138,228,583 - 138,240,735 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,944,579 - 137,957,055 (+)Ensembl
GRCm38.p6 Ensembl4138,217,268 - 138,229,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,956,968 - 137,961,868 (+)Ensembl
GRCm38.p6 Ensembl4138,229,657 - 138,234,557 (+)Ensembl
Ensembl Acc Id: ENSMUST00000165861   ⟹   ENSMUSP00000132614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4137,944,442 - 137,970,481 (+)Ensembl
GRCm38.p6 Ensembl4138,217,131 - 138,243,170 (+)Ensembl
RefSeq Acc Id: NM_001122896   ⟹   NP_001116368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
MGSCv374137,772,542 - 137,799,085 (+)RGD
Celera4139,993,842 - 140,022,987 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122897   ⟹   NP_001116369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
GRCm384138,217,127 - 138,244,683 (+)NCBI
MGSCv374137,772,542 - 137,799,085 (+)RGD
Celera4139,993,842 - 140,022,987 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001285478   ⟹   NP_001272407
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
Celera4139,993,842 - 140,022,987 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285479   ⟹   NP_001272408
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
Celera4139,993,842 - 140,022,987 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285480   ⟹   NP_001272409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
Celera4139,993,842 - 140,022,987 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285481   ⟹   NP_001272410
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
Celera4139,993,842 - 140,022,987 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356431   ⟹   NP_001343360
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356432   ⟹   NP_001343361
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
GRCm384138,217,127 - 138,244,683 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001421055   ⟹   NP_001407984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421056   ⟹   NP_001407985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421057   ⟹   NP_001407986
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421058   ⟹   NP_001407987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421059   ⟹   NP_001407988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421060   ⟹   NP_001407989
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_001421061   ⟹   NP_001407990
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
RefSeq Acc Id: NM_010470   ⟹   NP_034600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
GRCm384138,216,612 - 138,244,683 (+)NCBI
MGSCv374137,772,542 - 137,799,085 (+)RGD
Celera4139,993,842 - 140,022,987 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185235
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NR_185236
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,943 - 137,971,994 (+)NCBI
RefSeq Acc Id: NR_185237
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,476 - 137,971,994 (+)NCBI
RefSeq Acc Id: XM_006538568   ⟹   XP_006538631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,612 - 137,971,994 (+)NCBI
GRCm384138,217,301 - 138,243,160 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253217   ⟹   XP_030109077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,419 - 137,971,994 (+)NCBI
GRCm384138,217,108 - 138,243,160 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253218   ⟹   XP_030109078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,904 - 137,971,994 (+)NCBI
GRCm384138,216,712 - 138,243,160 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253221   ⟹   XP_030109081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,926 - 137,971,994 (+)NCBI
GRCm384138,216,712 - 138,243,160 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253222   ⟹   XP_030109082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,612 - 137,971,994 (+)NCBI
GRCm384138,219,782 - 138,243,160 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163695   ⟹   XP_036019588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,944,507 - 137,971,994 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954880
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394137,943,781 - 137,971,994 (+)NCBI
GRCm384138,216,470 - 138,241,863 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116368 (Get FASTA)   NCBI Sequence Viewer  
  NP_001116369 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272407 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272408 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272409 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272410 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343360 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343361 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407984 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407985 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407986 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407987 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407988 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407989 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407990 (Get FASTA)   NCBI Sequence Viewer  
  NP_034600 (Get FASTA)   NCBI Sequence Viewer  
  XP_006538631 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109077 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109078 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109081 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109082 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019588 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04053 (Get FASTA)   NCBI Sequence Viewer  
  AAH20024 (Get FASTA)   NCBI Sequence Viewer  
  AAI07688 (Get FASTA)   NCBI Sequence Viewer  
  BAB23683 (Get FASTA)   NCBI Sequence Viewer  
  BAC25794 (Get FASTA)   NCBI Sequence Viewer  
  BAC31507 (Get FASTA)   NCBI Sequence Viewer  
  BAC35912 (Get FASTA)   NCBI Sequence Viewer  
  BAE36164 (Get FASTA)   NCBI Sequence Viewer  
  BAE38604 (Get FASTA)   NCBI Sequence Viewer  
  BAE41340 (Get FASTA)   NCBI Sequence Viewer  
  CAA67961 (Get FASTA)   NCBI Sequence Viewer  
  EDL13246 (Get FASTA)   NCBI Sequence Viewer  
  EDL13247 (Get FASTA)   NCBI Sequence Viewer  
  EDL13248 (Get FASTA)   NCBI Sequence Viewer  
  EDL13249 (Get FASTA)   NCBI Sequence Viewer  
  EDL13250 (Get FASTA)   NCBI Sequence Viewer  
  EDL13251 (Get FASTA)   NCBI Sequence Viewer  
  EDL13252 (Get FASTA)   NCBI Sequence Viewer  
  EDL13253 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030541
  ENSMUSP00000030541.7
  ENSMUSP00000095447
  ENSMUSP00000095447.4
  ENSMUSP00000101451.2
  ENSMUSP00000101452
  ENSMUSP00000101452.2
  ENSMUSP00000101453.2
  ENSMUSP00000117216.2
  ENSMUSP00000118913.2
  ENSMUSP00000120587.2
  ENSMUSP00000122005.2
  ENSMUSP00000123467.2
  ENSMUSP00000132614
  ENSMUSP00000132614.2
GenBank Protein Q3TEA8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034600   ⟸   NM_010470
- Peptide Label: isoform 1
- UniProtKB: Q99KR0 (UniProtKB/Swiss-Prot),   Q8VE06 (UniProtKB/Swiss-Prot),   Q8C911 (UniProtKB/Swiss-Prot),   Q8C6H2 (UniProtKB/Swiss-Prot),   Q8BT17 (UniProtKB/Swiss-Prot),   Q61688 (UniProtKB/Swiss-Prot),   Q3TU07 (UniProtKB/Swiss-Prot),   Q3TM38 (UniProtKB/Swiss-Prot),   A2AM68 (UniProtKB/Swiss-Prot),   A2AM64 (UniProtKB/Swiss-Prot),   Q9DBI1 (UniProtKB/Swiss-Prot),   Q3TEA8 (UniProtKB/Swiss-Prot),   Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116368   ⟸   NM_001122896
- Peptide Label: isoform 2
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116369   ⟸   NM_001122897
- Peptide Label: isoform 1
- UniProtKB: Q99KR0 (UniProtKB/Swiss-Prot),   Q8VE06 (UniProtKB/Swiss-Prot),   Q8C911 (UniProtKB/Swiss-Prot),   Q8C6H2 (UniProtKB/Swiss-Prot),   Q8BT17 (UniProtKB/Swiss-Prot),   Q61688 (UniProtKB/Swiss-Prot),   Q3TU07 (UniProtKB/Swiss-Prot),   Q3TM38 (UniProtKB/Swiss-Prot),   A2AM68 (UniProtKB/Swiss-Prot),   A2AM64 (UniProtKB/Swiss-Prot),   Q9DBI1 (UniProtKB/Swiss-Prot),   Q3TEA8 (UniProtKB/Swiss-Prot),   Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272408   ⟸   NM_001285479
- Peptide Label: isoform 3
- UniProtKB: Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272410   ⟸   NM_001285481
- Peptide Label: isoform 5
- UniProtKB: Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272407   ⟸   NM_001285478
- Peptide Label: isoform 2
- UniProtKB: Q3TU07 (UniProtKB/Swiss-Prot),   Q3TM38 (UniProtKB/Swiss-Prot),   A2AM68 (UniProtKB/Swiss-Prot),   A2AM64 (UniProtKB/Swiss-Prot),   Q99KR0 (UniProtKB/Swiss-Prot),   Q8VE06 (UniProtKB/Swiss-Prot),   Q8C911 (UniProtKB/Swiss-Prot),   Q8C6H2 (UniProtKB/Swiss-Prot),   Q8BT17 (UniProtKB/Swiss-Prot),   Q61688 (UniProtKB/Swiss-Prot),   Q9DBI1 (UniProtKB/Swiss-Prot),   Q3TEA8 (UniProtKB/Swiss-Prot),   Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272409   ⟸   NM_001285480
- Peptide Label: isoform 4
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538631   ⟸   XM_006538568
- Peptide Label: isoform X4
- UniProtKB: Q99KR0 (UniProtKB/Swiss-Prot),   Q8VE06 (UniProtKB/Swiss-Prot),   Q8C911 (UniProtKB/Swiss-Prot),   Q8C6H2 (UniProtKB/Swiss-Prot),   Q8BT17 (UniProtKB/Swiss-Prot),   Q61688 (UniProtKB/Swiss-Prot),   Q3TU07 (UniProtKB/Swiss-Prot),   Q3TM38 (UniProtKB/Swiss-Prot),   A2AM68 (UniProtKB/Swiss-Prot),   A2AM64 (UniProtKB/Swiss-Prot),   Q9DBI1 (UniProtKB/Swiss-Prot),   Q3TEA8 (UniProtKB/Swiss-Prot),   Z4YKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343360   ⟸   NM_001356431
- Peptide Label: isoform 6
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109078   ⟸   XM_030253218
- Peptide Label: isoform X5
- UniProtKB: Z4YKB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109081   ⟸   XM_030253221
- Peptide Label: isoform X7
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109077   ⟸   XM_030253217
- Peptide Label: isoform X3
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001343361   ⟸   NM_001356432
- Peptide Label: isoform 2
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109082   ⟸   XM_030253222
- Peptide Label: isoform X7
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000123467   ⟸   ENSMUST00000130071
Ensembl Acc Id: ENSMUSP00000101451   ⟸   ENSMUST00000105825
Ensembl Acc Id: ENSMUSP00000101452   ⟸   ENSMUST00000105826
Ensembl Acc Id: ENSMUSP00000101453   ⟸   ENSMUST00000105827
Ensembl Acc Id: ENSMUSP00000120587   ⟸   ENSMUST00000124305
Ensembl Acc Id: ENSMUSP00000132614   ⟸   ENSMUST00000165861
Ensembl Acc Id: ENSMUSP00000122005   ⟸   ENSMUST00000148681
Ensembl Acc Id: ENSMUSP00000117216   ⟸   ENSMUST00000137865
Ensembl Acc Id: ENSMUSP00000118913   ⟸   ENSMUST00000137851
Ensembl Acc Id: ENSMUSP00000030541   ⟸   ENSMUST00000030541
Ensembl Acc Id: ENSMUSP00000095447   ⟸   ENSMUST00000097836
RefSeq Acc Id: XP_036019588   ⟸   XM_036163695
- Peptide Label: isoform X9
- UniProtKB: Z4YKA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407986   ⟸   NM_001421057
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001407985   ⟸   NM_001421056
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001407987   ⟸   NM_001421058
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001407984   ⟸   NM_001421055
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001407990   ⟸   NM_001421061
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001407988   ⟸   NM_001421059
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001407989   ⟸   NM_001421060
- Peptide Label: isoform 8
Protein Domains
H15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TEA8-F1-model_v2 AlphaFold Q3TEA8 1-554 view protein structure

Promoters
RGD ID:6835497
Promoter ID:MM_KWN:40301
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097836,   ENSMUST00000105825,   ENSMUST00000105826,   ENSMUST00000105827,   ENSMUST00000105828,   NM_001122896,   NM_001122897,   NM_010470,   OTTMUST00000023195,   OTTMUST00000023196,   OTTMUST00000023197,   OTTMUST00000023198,   OTTMUST00000023199,   OTTMUST00000042355,   UC008VKH.1,   UC008VKI.1,   UC008VKK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364137,772,021 - 137,773,257 (+)MPROMDB
RGD ID:6835475
Promoter ID:MM_KWN:40302
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000023200
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364137,783,581 - 137,784,081 (+)MPROMDB
RGD ID:6885174
Promoter ID:EPDNEW_M6038
Type:multiple initiation site
Name:Hp1bp3_1
Description:Mus musculus heterochromatin protein 1, binding protein 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6039  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384138,216,635 - 138,216,695EPDNEW
RGD ID:6885176
Promoter ID:EPDNEW_M6039
Type:initiation region
Name:Hp1bp3_2
Description:Mus musculus heterochromatin protein 1, binding protein 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6038  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384138,217,274 - 138,217,334EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109369 AgrOrtholog
Ensembl Genes ENSMUSG00000028759 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030541 ENTREZGENE
  ENSMUST00000030541.13 UniProtKB/Swiss-Prot
  ENSMUST00000097836 ENTREZGENE
  ENSMUST00000097836.10 UniProtKB/Swiss-Prot
  ENSMUST00000105825.8 UniProtKB/TrEMBL
  ENSMUST00000105826 ENTREZGENE
  ENSMUST00000105826.8 UniProtKB/TrEMBL
  ENSMUST00000105827.8 UniProtKB/TrEMBL
  ENSMUST00000124305.8 UniProtKB/TrEMBL
  ENSMUST00000130071.2 UniProtKB/TrEMBL
  ENSMUST00000137851.8 UniProtKB/TrEMBL
  ENSMUST00000137865.8 UniProtKB/TrEMBL
  ENSMUST00000148681.3 UniProtKB/TrEMBL
  ENSMUST00000165861 ENTREZGENE
  ENSMUST00000165861.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro H1/H5 UniProtKB/TrEMBL
  Histone_H1/H5_H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H5 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15441 UniProtKB/Swiss-Prot
MGD MGI:109369 ENTREZGENE
NCBI Gene 15441 ENTREZGENE
PANTHER PTHR15832:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Linker_histone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hp1bp3 PhenoGen
PRINTS HISTONEH5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AM62_MOUSE UniProtKB/TrEMBL
  A2AM63_MOUSE UniProtKB/TrEMBL
  A2AM64 ENTREZGENE
  A2AM65_MOUSE UniProtKB/TrEMBL
  A2AM68 ENTREZGENE
  A2AM69_MOUSE UniProtKB/TrEMBL
  A2AM70_MOUSE UniProtKB/TrEMBL
  HP1B3_MOUSE UniProtKB/Swiss-Prot
  Q3B7C1_MOUSE UniProtKB/TrEMBL
  Q3TEA8 ENTREZGENE
  Q3TM38 ENTREZGENE
  Q3TU07 ENTREZGENE
  Q61688 ENTREZGENE
  Q8BT17 ENTREZGENE
  Q8C6H2 ENTREZGENE
  Q8C911 ENTREZGENE
  Q8VE06 ENTREZGENE
  Q99KR0 ENTREZGENE
  Q9DBI1 ENTREZGENE
  Z4YKA3 ENTREZGENE, UniProtKB/TrEMBL
  Z4YKB8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2AM64 UniProtKB/Swiss-Prot
  A2AM68 UniProtKB/Swiss-Prot
  Q3TM38 UniProtKB/Swiss-Prot
  Q3TU07 UniProtKB/Swiss-Prot
  Q61688 UniProtKB/Swiss-Prot
  Q8BT17 UniProtKB/Swiss-Prot
  Q8C6H2 UniProtKB/Swiss-Prot
  Q8C911 UniProtKB/Swiss-Prot
  Q8VE06 UniProtKB/Swiss-Prot
  Q99KR0 UniProtKB/Swiss-Prot
  Q9DBI1 UniProtKB/Swiss-Prot