Prdx1 (peroxiredoxin 1) - Rat Genome Database

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Gene: Prdx1 (peroxiredoxin 1) Mus musculus
Analyze
Symbol: Prdx1
Name: peroxiredoxin 1
RGD ID: 733745
MGI Page MGI
Description: Enables identical protein binding activity. Acts upstream of or within several processes, including natural killer cell mediated cytotoxicity; regulation of intracellular signal transduction; and removal of superoxide radicals. Located in mitochondrion and myelin sheath. Is expressed in several structures, including alimentary system; central nervous system; metanephros; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrabromodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: macrophage 23 Kd stress protein; macrophage 23 kDa stress protein; macrophage 23kDa stress protein; macrophase stress protein 22kDa; macrophase stress protein 23 kd; MSP; MSP23; NkefA; OSF; OSF-3; OSF3; osteoblast specific factor 3; osteoblast-specific factor 3; P; PAG; Paga; peroxiredoxin-1; pr; PrdxI; proliferation-associated gene A; prx1; PrxI; Tdpx; Tdpx2; TDX2; thioredoxin dependent peroxide reductase 2; thioredoxin peroxidase 2; thioredoxin-dependent peroxide reductase 2; thioredoxin-dependent peroxiredoxin 1; TPxA; Trx dependent peroxide reductase 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17915   Gm21399   Gm7204   Prdx1-ps  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,542,796 - 116,557,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl4116,542,741 - 116,558,019 (+)Ensembl
GRCm384116,685,599 - 116,700,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,685,544 - 116,700,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv374116,358,204 - 116,372,605 (+)NCBIGRCm37mm9NCBIm37
MGSCv364116,183,531 - 116,197,932 (+)NCBImm8
Celera4115,419,593 - 115,433,994 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(S)-naringenin  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrabromodibenzodioxine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-diaminotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
2-tert-butylhydroquinone  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dihydrocoumarin  (EXP)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4-hydroxynon-2-enal  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (EXP)
8-hydroxy-2'-deoxyguanosine  (EXP)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphibole asbestos  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite ion  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
astaxanthin  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
calycosin  (ISO)
capsaicin  (ISO)
captan  (EXP)
carbon nanotube  (ISO)
cerium trichloride  (ISO)
chloramine T  (ISO)
chlordecone  (EXP)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
CU-O LINKAGE  (EXP)
cumene hydroperoxide  (ISO)
cylindrospermopsin  (EXP)
D-glucose  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (EXP,ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP,ISO)
dihydroartemisinin  (ISO)
dioscin  (EXP)
dioxygen  (ISO)
diquat  (EXP)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethoxyquin  (EXP)
etoposide  (EXP)
finasteride  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
frenolicin B  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (ISO)
glutathione  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
herbicide  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
hypochlorous acid  (EXP)
kojic acid  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (EXP,ISO)
maneb  (ISO)
menadione  (EXP)
mercury dibromide  (ISO)
metam  (EXP)
methimazole  (ISO)
methotrexate  (ISO)
methylmercury chloride  (EXP,ISO)
N,N-diethyl-m-toluamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
Nonylphenol  (ISO)
obeticholic acid  (ISO)
oleanolic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentachlorophenol  (EXP)
permethrin  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phlorizin  (EXP)
picloram  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
procymidone  (ISO)
Propiverine  (ISO)
Pyridostigmine bromide  (ISO)
pyrogallol  (EXP)
quartz  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (ISO)
rotenone  (EXP)
rottlerin  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
SB 203580  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP,ISO)
sodium fluoride  (EXP)
staurosporine  (EXP)
streptozocin  (EXP,ISO)
styrene  (ISO)
sulfasalazine  (EXP,ISO)
sulforaphane  (ISO)
sulindac  (ISO)
tert-butyl hydroperoxide  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
Tomentosin  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (EXP)
trichlopyr  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenylstannane  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
ursodeoxycholic acid  (EXP)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc pyrithione  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cell cycle  (IAGP)
abnormal erythrocyte morphology  (IAGP)
abnormal lymphocyte morphology  (IEA)
abnormal NK T cell number  (IAGP)
abnormal redox activity  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal tumor morphology  (IAGP)
anisocytosis  (IAGP)
decreased cell proliferation  (IAGP)
decreased circulating haptoglobin level  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased incidence of tumors by chemical induction  (IAGP)
enlarged spleen  (IAGP)
extramedullary hematopoiesis  (IAGP)
hemolytic anemia  (IAGP)
impaired natural killer cell mediated cytotoxicity  (IAGP)
increased adenoma incidence  (IAGP)
increased B cell derived lymphoma incidence  (IAGP)
increased carcinoma incidence  (IAGP)
increased cellular sensitivity to hydrogen peroxide  (IAGP)
increased cellular sensitivity to oxidative stress  (IAGP)
increased circulating lactate dehydrogenase level  (IAGP)
increased fibrosarcoma incidence  (IAGP)
increased hemangiosarcoma incidence  (IAGP)
increased hemoglobin concentration distribution width  (IAGP)
increased hepatocellular carcinoma incidence  (IAGP)
increased histiocytic sarcoma incidence  (IAGP)
increased keratinocyte apoptosis  (IAGP)
increased lung adenocarcinoma incidence  (IAGP)
increased lymphoma incidence  (IAGP)
increased malignant tumor incidence  (IAGP)
increased mammary adenocarcinoma incidence  (IAGP)
increased osteosarcoma incidence  (IAGP)
increased pancreatic islet cell adenoma incidence  (IAGP)
increased sarcoma incidence  (IAGP)
increased spleen weight  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased tumor incidence  (IAGP)
microcytosis  (IAGP)
poikilocytosis  (IAGP)
polychromatophilia  (IAGP)
premature death  (IAGP)
reticulocytosis  (IAGP)
thin skin  (IAGP)
References

Additional References at PubMed
PMID:8026862   PMID:8089076   PMID:8360158   PMID:8889548   PMID:9507200   PMID:10349636   PMID:10501973   PMID:10548725   PMID:10632718   PMID:10725249   PMID:10922068   PMID:11042159  
PMID:11076861   PMID:11796722   PMID:12107731   PMID:12196529   PMID:12477932   PMID:12519079   PMID:12520002   PMID:12627171   PMID:12714748   PMID:12891360   PMID:12904583   PMID:12960165  
PMID:14610273   PMID:14681479   PMID:15161859   PMID:15237445   PMID:15448164   PMID:15489334   PMID:15741177   PMID:15782199   PMID:15858817   PMID:16141072   PMID:16141073   PMID:16170382  
PMID:16278420   PMID:16297875   PMID:16880205   PMID:16888816   PMID:17609286   PMID:17634366   PMID:17640558   PMID:17697936   PMID:17921138   PMID:18070609   PMID:18544346   PMID:18614015  
PMID:18689572   PMID:18799693   PMID:19098005   PMID:19369943   PMID:19521566   PMID:19647805   PMID:19766572   PMID:19941984   PMID:20018613   PMID:20178744   PMID:20683885   PMID:20697350  
PMID:21239607   PMID:21319188   PMID:21434354   PMID:21516123   PMID:21565611   PMID:21677750   PMID:21873635   PMID:22099303   PMID:22496890   PMID:23019345   PMID:23101509   PMID:23185615  
PMID:23186333   PMID:23237955   PMID:23375831   PMID:23479738   PMID:23602274   PMID:23665500   PMID:24295341   PMID:24457600   PMID:24715692   PMID:25975898   PMID:26336360   PMID:26370502  
PMID:26496610   PMID:27434733   PMID:27507650   PMID:27517622   PMID:27605010   PMID:27689697   PMID:27752147   PMID:27786251   PMID:27821296   PMID:27926878   PMID:28378742   PMID:28485790  
PMID:28605287   PMID:28659575   PMID:28671696   PMID:28893373   PMID:29032183   PMID:29048427   PMID:29215052   PMID:29503398   PMID:29582423   PMID:29901182   PMID:30032718   PMID:30097850  
PMID:30111318   PMID:30185517   PMID:30333137   PMID:30550785   PMID:30562941   PMID:30595499   PMID:30696882   PMID:30713523   PMID:30894323   PMID:30991142   PMID:31026770   PMID:31028193  
PMID:31257950   PMID:31419957   PMID:31526567   PMID:32325033   PMID:32423810   PMID:32531679   PMID:32682987   PMID:32705184   PMID:32736685   PMID:34076143  


Genomics

Comparative Map Data
Prdx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,542,796 - 116,557,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl4116,542,741 - 116,558,019 (+)Ensembl
GRCm384116,685,599 - 116,700,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,685,544 - 116,700,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv374116,358,204 - 116,372,605 (+)NCBIGRCm37mm9NCBIm37
MGSCv364116,183,531 - 116,197,932 (+)NCBImm8
Celera4115,419,593 - 115,433,994 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.28NCBI
PRDX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl145,510,914 - 45,542,732 (-)EnsemblGRCh38hg38GRCh38
GRCh38145,511,051 - 45,522,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37145,976,723 - 45,988,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,749,294 - 45,760,196 (-)NCBINCBI36hg18NCBI36
Build 34145,645,800 - 45,656,702NCBI
Celera144,260,797 - 44,271,582 (-)NCBI
Cytogenetic Map1p34.1NCBI
HuRef144,088,373 - 44,099,940 (-)NCBIHuRef
CHM1_1146,093,972 - 46,105,688 (-)NCBICHM1_1
Prdx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25130,147,276 - 130,162,850 (+)NCBI
Rnor_6.0 Ensembl5135,536,413 - 135,551,990 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,536,413 - 135,551,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05139,332,556 - 139,348,210 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,975,780 - 136,991,630 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15136,981,005 - 136,996,856 (+)NCBI
Celera5128,674,439 - 128,690,018 (+)NCBICelera
Cytogenetic Map5q35NCBI
Prdx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,761,401 - 12,773,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,761,390 - 12,773,413 (+)NCBIChiLan1.0ChiLan1.0
PRDX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1146,171,453 - 46,182,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,171,453 - 46,182,018 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0144,813,508 - 44,824,430 (-)NCBIMhudiblu_PPA_v0panPan3
PRDX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,834,009 - 14,855,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,838,652 - 14,862,971 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,959,792 - 14,976,803 (+)NCBI
ROS_Cfam_1.01514,988,879 - 15,010,844 (+)NCBI
UMICH_Zoey_3.11514,790,828 - 14,808,277 (+)NCBI
UNSW_CanFamBas_1.01514,858,579 - 14,875,829 (+)NCBI
UU_Cfam_GSD_1.01514,930,831 - 14,947,857 (+)NCBI
Prdx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505860,816,994 - 60,828,561 (-)NCBI
SpeTri2.0NW_00493647426,641,776 - 26,653,291 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,824,520 - 165,861,442 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,847,390 - 165,859,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26153,253,841 - 153,265,947 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRDX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12087,267,026 - 87,277,634 (+)NCBI
ChlSab1.1 Ensembl2087,267,044 - 87,279,978 (+)Ensembl
Vero_WHO_p1.0NW_02366603329,683,931 - 29,694,719 (-)NCBI
Prdx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249061,405,253 - 1,414,980 (-)NCBI

Position Markers
Prdx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381648,218,836 - 48,219,300UniSTSGRCm38
GRCm388129,253,229 - 129,253,700UniSTSGRCm38
MGSCv371648,218,949 - 48,219,413UniSTSGRCm37
Celera8133,554,923 - 133,555,394UniSTS
Celera1648,579,770 - 48,580,234UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map16B5UniSTS
cM Map447.0UniSTS
cM Map447.0UniSTS
cM Map749.0UniSTS
cM Map832.0UniSTS
cM Map866.0UniSTS
cM Map1636.0UniSTS
cM Map1748.0UniSTS
UniSTS:235011  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,684,984 - 116,685,250UniSTSGRCm38
MGSCv374116,357,589 - 116,357,855UniSTSGRCm37
Celera4115,418,978 - 115,419,244UniSTS
Cytogenetic Map4D1UniSTS
cM Map447.0UniSTS
Prdx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384116,699,288 - 116,699,440UniSTSGRCm38
GRCm388129,253,629 - 129,253,781UniSTSGRCm38
MGSCv374116,371,893 - 116,372,045UniSTSGRCm37
Celera4115,433,282 - 115,433,434UniSTS
Celera8133,555,323 - 133,555,475UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map4D1UniSTS
cM Map447.0UniSTS
Prdx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388129,253,763 - 129,254,303UniSTSGRCm38
GRCm384116,699,423 - 116,699,963UniSTSGRCm38
MGSCv374116,372,028 - 116,372,568UniSTSGRCm37
Celera8133,555,457 - 133,555,997UniSTS
Celera4115,433,417 - 115,433,957UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map4D1UniSTS
Prdx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381648,218,605 - 48,219,204UniSTSGRCm38
GRCm388129,252,998 - 129,253,597UniSTSGRCm38
MGSCv371648,218,718 - 48,219,317UniSTSGRCm37
Celera8133,554,692 - 133,555,291UniSTS
Celera1648,579,539 - 48,580,138UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map8E2UniSTS
Prdx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map16B5UniSTS
cM Map1636.0UniSTS
cM Map749.0UniSTS
cM Map832.0UniSTS
cM Map1748.0UniSTS
cM Map447.0UniSTS
cM Map866.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117215009Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465400000119000000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483747673117747809Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485571641119571840Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485571641119571840Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485923970119924082Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485923970119924082Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488200000118700000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)490000000119000000Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)493118593127118593Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494875058128875257Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined495069342128115487Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498657302128115487Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100214774134215009Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100214774134215009Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4101000000125000000Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101717404123233418Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109800935133427471Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4111000000126000000Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115173580129572122Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116413782124161387Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1528
Count of miRNA genes:680
Interacting mature miRNAs:847
Transcripts:ENSMUST00000030454, ENSMUST00000106470, ENSMUST00000129315, ENSMUST00000135573, ENSMUST00000151129, ENSMUST00000156145
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB023564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH008006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D21252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM570402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM570404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM570420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030454   ⟹   ENSMUSP00000030454
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,687,312 - 116,699,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106470   ⟹   ENSMUSP00000102078
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,685,887 - 116,699,272 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129315   ⟹   ENSMUSP00000117007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,685,861 - 116,692,992 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135573   ⟹   ENSMUSP00000114159
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,685,544 - 116,700,822 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151129   ⟹   ENSMUSP00000119794
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,685,599 - 116,693,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4116,685,599 - 116,687,897 (+)Ensembl
RefSeq Acc Id: NM_011034   ⟹   NP_035164
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394116,542,796 - 116,557,197 (+)NCBI
GRCm384116,685,599 - 116,700,000 (+)ENTREZGENE
MGSCv374116,358,204 - 116,372,605 (+)RGD
Celera4115,419,593 - 115,433,994 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035164   ⟸   NM_011034
- UniProtKB: P35700 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000102078   ⟸   ENSMUST00000106470
RefSeq Acc Id: ENSMUSP00000119794   ⟸   ENSMUST00000151129
RefSeq Acc Id: ENSMUSP00000114159   ⟸   ENSMUST00000135573
RefSeq Acc Id: ENSMUSP00000117007   ⟸   ENSMUST00000129315
RefSeq Acc Id: ENSMUSP00000030454   ⟸   ENSMUST00000030454
Protein Domains
Thioredoxin

Promoters
RGD ID:6835909
Promoter ID:MM_KWN:39177
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106470,   OTTMUST00000021822,   OTTMUST00000021823,   OTTMUST00000021825,   OTTMUST00000021826
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364116,358,029 - 116,358,529 (+)MPROMDB
RGD ID:6835908
Promoter ID:MM_KWN:39179
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   MEF_B6
Transcripts:OTTMUST00000021827
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364116,359,096 - 116,360,182 (+)MPROMDB
RGD ID:6884322
Promoter ID:EPDNEW_M5612
Type:initiation region
Name:Prdx1_1
Description:Mus musculus peroxiredoxin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384116,685,599 - 116,685,659EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99523 AgrOrtholog
Ensembl Genes ENSMUSG00000028691 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030454 UniProtKB/TrEMBL
  ENSMUSP00000102078 UniProtKB/Swiss-Prot
  ENSMUSP00000114159 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117007 UniProtKB/TrEMBL
  ENSMUSP00000119794 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030454 UniProtKB/TrEMBL
  ENSMUST00000106470 UniProtKB/Swiss-Prot
  ENSMUST00000129315 UniProtKB/TrEMBL
  ENSMUST00000135573 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000151129 UniProtKB/TrEMBL
Gene3D-CATH 3.40.30.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AhpC/TSA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peroxiredoxin_AhpC-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peroxiredoxin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18477 UniProtKB/Swiss-Prot
MGD MGI:99523 ENTREZGENE
NCBI Gene 18477 ENTREZGENE
Pfam 1-cysPrx_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AhpC-TSA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prdx1 PhenoGen
PIRSF AHPC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AXW4_MOUSE UniProtKB/TrEMBL
  B1AXW5_MOUSE UniProtKB/TrEMBL
  B1AXW6_MOUSE UniProtKB/TrEMBL
  P35700 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3U9J9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UBV4 UniProtKB/Swiss-Prot
  Q9CWI2 UniProtKB/Swiss-Prot