Abfw3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Abfw3 (Abdominal fat weight QTL 3) Rattus norvegicus

Symbol: Abfw3
Name: Abdominal fat weight QTL 3
RGD ID: 8694198
Previously known as: percentage of total visceral fat
Trait: visceral adipose mass   (VT:0010063)    
Measurement Type: abdominal fat pad weight to body weight ratio   (CMO:0000095)    
LOD Score: 16.13
P Value: 0.001
Variance: 21.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85116,702,075 - 161,702,075RGD_MAPPER_PIPELINE
mRatBN7.25111,416,838 - 156,416,838RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05116,767,924 - 161,767,924RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05120,552,072 - 165,552,072RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45118,425,279 - 163,425,279RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratabdominal obesity-metabolic syndrome  IAGP 8694157 RGD 
Abfw3RatWeight Gain  IAGP 8694157 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratincreased body weight  IDA 8694157 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratabdominal fat pad weight to body weight ratio  IDA 8694157 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratcontrol condition  IDA 8694157 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratdigital column scale  IDA 8694157 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3RatF344/IcoCrlf  IEA 8694157 RGD 
Abfw3RatLOU/NimrOlaHsd  IEA 8694157 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Abfw3Ratvisceral adipose mass  IDA 8694157 RGD 


#
Reference Title
Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


1 to 20 of 938 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41316576LOC120103249U7 small nuclear RNA5111531651111531712Rat
41245849LOC120103242U7 small nuclear RNA5111531726111531787Rat
1597743Gid8-ps1GID complex subunit 8 homolog, pseudogene 15111562436111563265Rat
1592089Tbc1d5-ps1TBC1 domain family, member 5, pseudogene 15111564652111573058Rat
40966355LOC120103290small nucleolar RNA SNORA485111718328111718474Rat
7502785LOC102553524uncharacterized LOC1025535245112230510112246625Rat
41175373LOC120103115uncharacterized LOC1201031155112244680112248682Rat
41107926LOC120103114uncharacterized LOC1201031145112416267112442856Rat
3170Nfianuclear factor I/A5112436655112781878Rat
11413852LOC108351005uncharacterized LOC1083510055112797944112805529Rat
2318487Rps18l5ribosomal protein S18-like 55112997100112997655Rat
1305442Tm2d1TM2 domain containing 15113020793113062134Rat
1565362PatjPATJ, crumbs cell polarity complex component5113061985113364807Rat
1595093L1td1LINE-1 type transposase domain containing 15113373193113386088Rat
1307635Kank4KN motif and ankyrin repeat domains 45113401491113465526Rat
41215575Usp15-ps2ubiquitin specific peptidase 15, pseudogene 25113559958113563874Rat
1306461Usp1ubiquitin specific peptidase 15113587564113598934Rat
1309790Dock7dedicator of cytokinesis 75113599371113782871Rat
1564505Angptl3angiopoietin-like 35113703007113710044Rat
40981943Rpl15-ps14ribosomal protein L15, pseudogene 145113792289113793252Rat

1 to 20 of 938 rows
1 to 20 of 1321 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
60483D5Got342775111548415111548692Ratregion
60484D5Got351605111564698111564858Ratregion
5068238AU0472662325111864527111864759Ratregion
5036653AU0487272335111945494111945729Ratregion
7794818D5Mco472185112175328112175546Ratregion
5085012AI0095531155112230744112230859Ratregion
5050786RH1342571955112337803112337996Ratregion
43948D5Got381475112393083112393230Ratregion
5085922BM3851741565112414467112414623Ratregion
5029379RH1445711595112416310112416469Ratregion
37644D5Rat1151985112419535112419733Ratregion
41678D5Rat1971535112426055112426208Ratregion
5058958BE1026141775112428800112428977Ratregion
43944D5Wox182685112450727112450995Ratregion
5062546BI2889681895112466595112466784Ratregion
5028681RH80440905112513923112514012Ratregion
5055315RH1437301525112570624112570776Ratregion
5027073D1S34192575112776883112777140Ratregion
5063096BE1071211545112781235112781389Ratregion
5057404AA9631301995112781625112781824Ratregion
1 to 20 of 1321 rows

Peak: (D5Mgh20)
Rat AssemblyChrPosition (strand)Source
GRCr85139,201,964 - 139,202,186 (+)Marker Load Pipeline
mRatBN7.25133,916,727 - 133,916,949 (+)MAPPER
Rnor_6.05139,267,814 - 139,268,035NCBI
Rnor_5.05143,051,962 - 143,052,183UniSTS
RGSC_v3.45140,925,168 - 140,925,391RGD
RGSC_v3.45140,925,169 - 140,925,390UniSTS
RGSC_v3.15140,930,394 - 140,930,617RGD
Celera5132,473,290 - 132,473,511UniSTS
RH 3.4 Map5901.9UniSTS
RH 3.4 Map5901.9RGD
RH 2.0 Map5869.8RGD
Cytogenetic Map5 RGD


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat

1 to 10 of 84 rows


Note Type Note Reference
qtl_general confidence interval 112.9-132.3 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment animals were sacrificed, total visceral fat was removed and weighed 8694157
qtl_general software package used: MultiQTL software 8694157