Eif4g3 (eukaryotic translation initiation factor 4 gamma, 3) - Rat Genome Database

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Gene: Eif4g3 (eukaryotic translation initiation factor 4 gamma, 3) Rattus norvegicus
Analyze
Symbol: Eif4g3
Name: eukaryotic translation initiation factor 4 gamma, 3
RGD ID: 1311370
Description: Predicted to enable mRNA binding activity and translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within positive regulation of cellular protein metabolic process; positive regulation of meiosis I; and spermatogenesis. Predicted to be part of eukaryotic translation initiation factor 4F complex. Orthologous to human EIF4G3 (eukaryotic translation initiation factor 4 gamma 3); PARTICIPATES IN myocarditis pathway; RNA transport pathway; INTERACTS WITH 6-propyl-2-thiouracil; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: eukaryotic translation initiation factor 4 gamma 3; LOC298573
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25150,197,410 - 150,418,363 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5150,195,226 - 150,418,363 (+)Ensembl
Rnor_6.05156,343,663 - 156,564,037 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,396,695 - 156,564,037 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,093,246 - 160,313,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45156,809,618 - 156,979,249 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15156,765,883 - 156,988,880 (+)NCBI
Celera5148,645,136 - 148,812,526 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:17556672   PMID:18426977   PMID:20430745   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Eif4g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25150,197,410 - 150,418,363 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5150,195,226 - 150,418,363 (+)Ensembl
Rnor_6.05156,343,663 - 156,564,037 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,396,695 - 156,564,037 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,093,246 - 160,313,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45156,809,618 - 156,979,249 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15156,765,883 - 156,988,880 (+)NCBI
Celera5148,645,136 - 148,812,526 (+)NCBICelera
Cytogenetic Map5q36NCBI
EIF4G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl120,806,292 - 21,176,888 (-)EnsemblGRCh38hg38GRCh38
GRCh38120,806,292 - 21,176,897 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37121,132,785 - 21,503,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36121,005,559 - 21,375,927 (-)NCBINCBI36hg18NCBI36
Build 34120,878,280 - 21,183,182NCBI
Celera119,458,712 - 19,828,225 (-)NCBI
Cytogenetic Map1p36.12NCBI
HuRef119,378,733 - 19,749,505 (-)NCBIHuRef
CHM1_1121,243,574 - 21,614,986 (-)NCBICHM1_1
Eif4g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394137,719,090 - 137,934,397 (+)NCBIGRCm39mm39
GRCm39 Ensembl4137,720,333 - 137,935,819 (+)Ensembl
GRCm384137,991,779 - 138,207,086 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4137,993,022 - 138,208,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv374137,549,385 - 137,762,398 (+)NCBIGRCm37mm9NCBIm37
MGSCv364137,265,546 - 137,478,559 (+)NCBImm8
Celera4139,812,830 - 139,983,529 (+)NCBICelera
Cytogenetic Map4D3NCBI
Eif4g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554521,328,345 - 1,625,934 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554521,328,103 - 1,625,341 (-)NCBIChiLan1.0ChiLan1.0
EIF4G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1120,800,597 - 21,164,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,800,597 - 21,165,755 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0119,755,217 - 20,123,490 (-)NCBIMhudiblu_PPA_v0panPan3
EIF4G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1277,822,686 - 78,149,943 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl277,822,688 - 78,149,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,334,228 - 74,663,873 (+)NCBI
ROS_Cfam_1.0278,388,374 - 78,718,761 (+)NCBI
UMICH_Zoey_3.1275,205,927 - 75,535,403 (+)NCBI
UNSW_CanFamBas_1.0276,217,415 - 76,547,886 (+)NCBI
UU_Cfam_GSD_1.0277,219,909 - 77,550,522 (+)NCBI
Eif4g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,893,741 - 41,105,422 (-)NCBI
SpeTri2.0NW_0049364746,718,719 - 7,004,066 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl679,022,131 - 79,382,062 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1679,022,222 - 79,382,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2673,263,443 - 73,446,267 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120111,381,420 - 111,747,248 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20111,469,837 - 111,747,416 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660334,485,115 - 4,858,912 (-)NCBIVero_WHO_p1.0
Eif4g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247645,823,254 - 6,190,610 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D5Rat106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,298,170 - 150,298,378 (+)MAPPERmRatBN7.2
Rnor_6.05156,443,753 - 156,443,962NCBIRnor6.0
Rnor_5.05160,193,152 - 160,193,361UniSTSRnor5.0
RGSC_v3.45156,856,642 - 156,856,851UniSTSRGSC3.4
RGSC_v3.45156,856,641 - 156,856,851RGDRGSC3.4
RGSC_v3.15156,866,681 - 156,866,890RGD
Celera5148,692,037 - 148,692,246UniSTS
RH 3.4 Map4952.12RGD
RH 3.4 Map4952.12UniSTS
RH 2.0 Map5976.2RGD
SHRSP x BN Map588.3499RGD
FHH x ACI Map584.2699RGD
Cytogenetic Map5q36UniSTS
RH142371  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,418,444 - 150,418,621 (+)MAPPERmRatBN7.2
Rnor_6.05156,564,573 - 156,564,749NCBIRnor6.0
Rnor_5.05160,313,957 - 160,314,133UniSTSRnor5.0
RGSC_v3.45156,979,331 - 156,979,507UniSTSRGSC3.4
Celera1910,174,102 - 10,174,278UniSTS
RH 3.4 Map1995.82UniSTS
Cytogenetic Map5q36UniSTS
BE108871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,338,647 - 150,338,831 (+)MAPPERmRatBN7.2
Rnor_6.05156,484,841 - 156,485,024NCBIRnor6.0
Rnor_5.05160,234,261 - 160,234,444UniSTSRnor5.0
RGSC_v3.45156,897,492 - 156,897,675UniSTSRGSC3.4
Celera5148,732,334 - 148,732,517UniSTS
RH 3.4 Map51030.6UniSTS
Cytogenetic Map5q36UniSTS
RH129504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,255,660 - 150,255,839 (+)MAPPERmRatBN7.2
mRatBN7.23145,367,729 - 145,367,909 (+)MAPPERmRatBN7.2
Rnor_6.03152,943,498 - 152,943,677NCBIRnor6.0
Rnor_6.05156,401,245 - 156,401,423NCBIRnor6.0
Rnor_5.05160,150,644 - 160,150,822UniSTSRnor5.0
Rnor_5.03158,753,467 - 158,753,646UniSTSRnor5.0
RGSC_v3.43147,276,516 - 147,276,695UniSTSRGSC3.4
RGSC_v3.45156,814,134 - 156,814,312UniSTSRGSC3.4
Celera5148,649,576 - 148,649,754UniSTS
Celera3144,084,797 - 144,084,976UniSTS
RH 3.4 Map51029.7UniSTS
Cytogenetic Map3q42UniSTS
Cytogenetic Map5q36UniSTS
RH144113  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,312,224 - 150,312,465 (+)MAPPERmRatBN7.2
Rnor_6.05156,458,251 - 156,458,491NCBIRnor6.0
Rnor_5.05160,207,671 - 160,207,911UniSTSRnor5.0
RGSC_v3.45156,871,067 - 156,871,307UniSTSRGSC3.4
Celera5148,706,054 - 148,706,294UniSTS
RH 3.4 Map51032.1UniSTS
Cytogenetic Map5q36UniSTS
AW531181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,303,610 - 150,303,781 (+)MAPPERmRatBN7.2
Rnor_6.05156,449,193 - 156,449,363NCBIRnor6.0
Rnor_5.05160,198,592 - 160,198,762UniSTSRnor5.0
RGSC_v3.45156,862,082 - 156,862,252UniSTSRGSC3.4
Celera5148,697,460 - 148,697,630UniSTS
RH 3.4 Map51030.0UniSTS
Cytogenetic Map5q36UniSTS
BI292959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,345,672 - 150,345,856 (+)MAPPERmRatBN7.2
Rnor_6.05156,491,866 - 156,492,049NCBIRnor6.0
Rnor_5.05160,241,286 - 160,241,469UniSTSRnor5.0
RGSC_v3.45156,904,517 - 156,904,700UniSTSRGSC3.4
Celera5148,739,389 - 148,739,572UniSTS
RH 3.4 Map51029.6UniSTS
Cytogenetic Map5q36UniSTS
BF401746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,292,053 - 150,292,146 (+)MAPPERmRatBN7.2
Rnor_6.05156,437,636 - 156,437,728NCBIRnor6.0
Rnor_5.05160,187,035 - 160,187,127UniSTSRnor5.0
RGSC_v3.45156,850,525 - 156,850,617UniSTSRGSC3.4
Celera5148,685,920 - 148,686,012UniSTS
RH 3.4 Map51030.4UniSTS
Cytogenetic Map5q36UniSTS
BF412440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,205,790 - 150,205,963 (+)MAPPERmRatBN7.2
Rnor_6.05156,351,345 - 156,351,521NCBIRnor6.0
Rnor_5.05160,100,842 - 160,101,018UniSTSRnor5.0
RGSC_v3.45156,763,367 - 156,763,539UniSTSRGSC3.4
Celera5148,599,934 - 148,600,106UniSTS
RH 3.4 Map51027.3UniSTS
Cytogenetic Map5q36UniSTS
RH137485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,251,656 - 150,251,852 (+)MAPPERmRatBN7.2
Rnor_6.05156,397,210 - 156,397,405NCBIRnor6.0
Rnor_5.05160,146,609 - 160,146,804UniSTSRnor5.0
RGSC_v3.45156,810,133 - 156,810,328UniSTSRGSC3.4
Celera5148,645,651 - 148,645,846UniSTS
Cytogenetic Map5q36UniSTS
RH137762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25150,374,137 - 150,374,316 (+)MAPPERmRatBN7.2
Rnor_6.05156,520,344 - 156,520,522NCBIRnor6.0
Rnor_5.05160,269,643 - 160,269,821UniSTSRnor5.0
RGSC_v3.45156,933,413 - 156,933,591UniSTSRGSC3.4
Celera5148,768,083 - 148,768,261UniSTS
RH 3.4 Map51030.6UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:117
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000067631
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 52 36 19 36 8 11 74 35 41 11 8
Low 5 5 5 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000067631   ⟹   ENSRNOP00000059390
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,251,142 - 150,418,363 (+)Ensembl
Rnor_6.0 Ensembl5156,396,695 - 156,564,037 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090232   ⟹   ENSRNOP00000070544
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,251,142 - 150,418,363 (+)Ensembl
Rnor_6.0 Ensembl5156,439,633 - 156,563,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098443   ⟹   ENSRNOP00000096026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,195,226 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099490   ⟹   ENSRNOP00000080111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,198,670 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103027   ⟹   ENSRNOP00000084998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,251,142 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103555   ⟹   ENSRNOP00000080944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,295,581 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110574   ⟹   ENSRNOP00000086238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,198,670 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112319   ⟹   ENSRNOP00000095940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,195,318 - 150,418,363 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115071   ⟹   ENSRNOP00000087364
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5150,198,696 - 150,418,363 (+)Ensembl
RefSeq Acc Id: NM_001106693   ⟹   NP_001100163
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,251,142 - 150,418,363 (+)NCBI
Rnor_6.05156,396,695 - 156,564,037 (+)NCBI
Rnor_5.05160,093,246 - 160,313,421 (+)NCBI
RGSC_v3.45156,809,618 - 156,979,249 (+)RGD
Celera5148,645,136 - 148,812,526 (+)RGD
Sequence:
RefSeq Acc Id: XM_008764221   ⟹   XP_008762443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,439 - 150,418,287 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764222   ⟹   XP_008762444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,441 - 150,418,287 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593294   ⟹   XP_017448783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,440 - 150,418,300 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593296   ⟹   XP_017448785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593298   ⟹   XP_017448787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,440 - 150,418,287 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593300   ⟹   XP_017448789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
Rnor_6.05156,343,842 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593303   ⟹   XP_017448792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
Rnor_6.05156,343,663 - 156,563,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109643   ⟹   XP_038965571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109644   ⟹   XP_038965572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109645   ⟹   XP_038965573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,380 (+)NCBI
RefSeq Acc Id: XM_039109647   ⟹   XP_038965575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,426 - 150,410,380 (+)NCBI
RefSeq Acc Id: XM_039109648   ⟹   XP_038965576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,426 - 150,410,380 (+)NCBI
RefSeq Acc Id: XM_039109649   ⟹   XP_038965577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109650   ⟹   XP_038965578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,379 (+)NCBI
RefSeq Acc Id: XM_039109651   ⟹   XP_038965579
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,441 - 150,418,287 (+)NCBI
RefSeq Acc Id: XM_039109652   ⟹   XP_038965580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109653   ⟹   XP_038965581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109654   ⟹   XP_038965582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,379 (+)NCBI
RefSeq Acc Id: XM_039109655   ⟹   XP_038965583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109656   ⟹   XP_038965584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109657   ⟹   XP_038965585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,428 - 150,410,376 (+)NCBI
RefSeq Acc Id: XM_039109658   ⟹   XP_038965586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109659   ⟹   XP_038965587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,426 - 150,410,380 (+)NCBI
RefSeq Acc Id: XM_039109660   ⟹   XP_038965588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,428 - 150,410,377 (+)NCBI
RefSeq Acc Id: XM_039109661   ⟹   XP_038965589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,379 (+)NCBI
RefSeq Acc Id: XM_039109662   ⟹   XP_038965590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,424 - 150,410,382 (+)NCBI
RefSeq Acc Id: XM_039109663   ⟹   XP_038965591
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,379 (+)NCBI
RefSeq Acc Id: XM_039109664   ⟹   XP_038965592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109665   ⟹   XP_038965593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109666   ⟹   XP_038965594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,428 - 150,410,377 (+)NCBI
RefSeq Acc Id: XM_039109667   ⟹   XP_038965595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,427 - 150,410,378 (+)NCBI
RefSeq Acc Id: XM_039109668   ⟹   XP_038965596
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,428 - 150,410,377 (+)NCBI
RefSeq Acc Id: XM_039109669   ⟹   XP_038965597
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,425 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109670   ⟹   XP_038965598
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,198,101 - 150,410,381 (+)NCBI
RefSeq Acc Id: XM_039109671   ⟹   XP_038965599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,198,101 - 150,418,287 (+)NCBI
RefSeq Acc Id: XM_039109672   ⟹   XP_038965600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,308,738 - 150,410,376 (+)NCBI
RefSeq Acc Id: XM_039109673   ⟹   XP_038965601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,308,738 - 150,410,377 (+)NCBI
RefSeq Acc Id: XM_039109674   ⟹   XP_038965602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,360,610 - 150,410,380 (+)NCBI
RefSeq Acc Id: XM_039109675   ⟹   XP_038965603
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,411 - 150,374,692 (+)NCBI
RefSeq Acc Id: XM_039109676   ⟹   XP_038965604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,410 - 150,374,692 (+)NCBI
RefSeq Acc Id: XR_005504409
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25150,197,417 - 150,385,065 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100163 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762443 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762444 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448783 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448785 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448787 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448789 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448792 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965571 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965572 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965573 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965576 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965577 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965581 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965582 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965583 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965596 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965604 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80855 (Get FASTA)   NCBI Sequence Viewer  
  EDL80856 (Get FASTA)   NCBI Sequence Viewer  
  EDL80857 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100163   ⟸   NM_001106693
- UniProtKB: D4A554 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762443   ⟸   XM_008764221
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008762444   ⟸   XM_008764222
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017448792   ⟸   XM_017593303
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: XP_017448783   ⟸   XM_017593294
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017448787   ⟸   XM_017593298
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017448785   ⟸   XM_017593296
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017448789   ⟸   XM_017593300
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: ENSRNOP00000070544   ⟸   ENSRNOT00000090232
RefSeq Acc Id: ENSRNOP00000059390   ⟸   ENSRNOT00000067631
RefSeq Acc Id: XP_038965604   ⟸   XM_039109676
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038965603   ⟸   XM_039109675
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038965590   ⟸   XM_039109662
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038965571   ⟸   XM_039109643
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965577   ⟸   XM_039109649
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038965572   ⟸   XM_039109644
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038965580   ⟸   XM_039109652
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038965597   ⟸   XM_039109669
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038965573   ⟸   XM_039109645
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038965575   ⟸   XM_039109647
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038965576   ⟸   XM_039109648
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038965587   ⟸   XM_039109659
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038965578   ⟸   XM_039109650
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038965582   ⟸   XM_039109654
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038965589   ⟸   XM_039109661
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038965591   ⟸   XM_039109663
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038965581   ⟸   XM_039109653
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038965583   ⟸   XM_039109655
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038965584   ⟸   XM_039109656
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038965586   ⟸   XM_039109658
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038965592   ⟸   XM_039109664
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038965593   ⟸   XM_039109665
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038965595   ⟸   XM_039109667
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038965588   ⟸   XM_039109660
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038965594   ⟸   XM_039109666
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038965596   ⟸   XM_039109668
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038965585   ⟸   XM_039109657
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038965579   ⟸   XM_039109651
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038965599   ⟸   XM_039109671
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038965598   ⟸   XM_039109670
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038965601   ⟸   XM_039109673
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038965600   ⟸   XM_039109672
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038965602   ⟸   XM_039109674
- Peptide Label: isoform X37
RefSeq Acc Id: ENSRNOP00000084998   ⟸   ENSRNOT00000103027
RefSeq Acc Id: ENSRNOP00000095940   ⟸   ENSRNOT00000112319
RefSeq Acc Id: ENSRNOP00000080944   ⟸   ENSRNOT00000103555
RefSeq Acc Id: ENSRNOP00000080111   ⟸   ENSRNOT00000099490
RefSeq Acc Id: ENSRNOP00000096026   ⟸   ENSRNOT00000098443
RefSeq Acc Id: ENSRNOP00000086238   ⟸   ENSRNOT00000110574
RefSeq Acc Id: ENSRNOP00000087364   ⟸   ENSRNOT00000115071
Protein Domains
MI   W2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694184
Promoter ID:EPDNEW_R4709
Type:single initiation site
Name:Eif4g3_1
Description:eukaryotic translation initiation factor 4 gamma, 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05156,396,622 - 156,396,682EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311370 AgrOrtholog
Ensembl Genes ENSRNOG00000014368 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059390 UniProtKB/TrEMBL
  ENSRNOP00000070544 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067631 UniProtKB/TrEMBL
  ENSRNOT00000090232 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.180 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  EIF4G3 UniProtKB/TrEMBL
  Initiation_fac_eIF4g_MI UniProtKB/TrEMBL
  MIF4-like_sf UniProtKB/TrEMBL
  MIF4G-like_typ-3 UniProtKB/TrEMBL
  W2_domain UniProtKB/TrEMBL
KEGG Report rno:298573 UniProtKB/TrEMBL
NCBI Gene 298573 ENTREZGENE
PANTHER PTHR23253:SF23 UniProtKB/TrEMBL
Pfam MA3 UniProtKB/TrEMBL
  MIF4G UniProtKB/TrEMBL
  PF02020 UniProtKB/TrEMBL
PhenoGen Eif4g3 PhenoGen
PROSITE PS51363 UniProtKB/TrEMBL
  PS51366 UniProtKB/TrEMBL
SMART eIF5C UniProtKB/TrEMBL
  MA3 UniProtKB/TrEMBL
  MIF4G UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2JY73_RAT UniProtKB/TrEMBL
  D4A554 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Eif4g3  eukaryotic translation initiation factor 4 gamma, 3   Eif4g3_predicted  eukaryotic translation initiation factor 4 gamma, 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Eif4g3_predicted  eukaryotic translation initiation factor 4 gamma, 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED