Macf1 (microtubule-actin crosslinking factor 1) - Rat Genome Database

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Gene: Macf1 (microtubule-actin crosslinking factor 1) Rattus norvegicus
Analyze
Symbol: Macf1
Name: microtubule-actin crosslinking factor 1
RGD ID: 1306057
Description: Predicted to enable ATP hydrolysis activity; cytoskeletal protein binding activity; and structural molecule activity. Involved in positive regulation of Wnt signaling pathway. Located in membrane. Human ortholog(s) of this gene implicated in lissencephaly 9 with complex brainstem malformation. Orthologous to human MACF1 (microtubule actin crosslinking factor 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: actin cross-linking family 7; LOC298511; LOC362587; microtubule-actin cross-linking factor 1; similar to microfilament and actin filament cross-linker protein isoform b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,908,829 - 141,234,127 (-)NCBIGRCr8
mRatBN7.25135,623,734 - 135,949,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,623,742 - 135,945,905 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,329,667 - 138,655,251 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05140,099,629 - 140,425,249 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05140,106,778 - 140,432,405 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05141,039,455 - 141,363,524 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5141,039,468 - 141,363,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,829,588 - 145,151,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,659,726 - 142,986,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,667,739 - 142,701,960 (-)NCBI
Celera5134,162,059 - 134,482,913 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
etoposide  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
maneb  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
microcystin RR  (ISO)
naphthalene  (ISO)
Nivalenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quinolin-8-ol  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP,ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
vitamin E  (ISO)
xylitol  (ISO)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,ISO)
cell junction  (IEA,ISO)
cell projection  (IEA)
cytoplasm  (IBA,IEA,ISO,ISS)
cytoskeleton  (IEA)
Golgi apparatus  (ISO,ISS)
intermediate filament  (IBA)
membrane  (IBA,IDA,IEA)
microtubule  (IBA,IEA,ISO,ISS)
microtubule cytoskeleton  (ISO)
plasma membrane  (IEA,ISO,ISS)
postsynaptic density  (ISO)
ruffle membrane  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The role of microtubule actin cross-linking factor 1 (MACF1) in the Wnt signaling pathway. Chen HJ, etal., Genes Dev. 2006 Jul 15;20(14):1933-45. Epub 2006 Jun 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10559237   PMID:14636561   PMID:15265687   PMID:16076900   PMID:17114649   PMID:18854161   PMID:20937854   PMID:21295697   PMID:22496866   PMID:22681889   PMID:22705394   PMID:25468996  
PMID:26526844   PMID:27693509   PMID:29476059  


Genomics

Comparative Map Data
Macf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,908,829 - 141,234,127 (-)NCBIGRCr8
mRatBN7.25135,623,734 - 135,949,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,623,742 - 135,945,905 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,329,667 - 138,655,251 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05140,099,629 - 140,425,249 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05140,106,778 - 140,432,405 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05141,039,455 - 141,363,524 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5141,039,468 - 141,363,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,829,588 - 145,151,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,659,726 - 142,986,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,667,739 - 142,701,960 (-)NCBI
Celera5134,162,059 - 134,482,913 (-)NCBICelera
Cytogenetic Map5q36NCBI
MACF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38139,084,167 - 39,487,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl139,081,316 - 39,487,177 (+)EnsemblGRCh38hg38GRCh38
GRCh37139,549,839 - 39,952,810 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36139,319,705 - 39,725,376 (+)NCBINCBI36Build 36hg18NCBI36
Build 34139,465,902 - 39,621,882NCBI
Celera137,828,167 - 38,234,164 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef137,669,045 - 38,071,866 (+)NCBIHuRef
CHM1_1139,665,458 - 40,068,698 (+)NCBICHM1_1
T2T-CHM13v2.0138,951,565 - 39,355,064 (+)NCBIT2T-CHM13v2.0
Macf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,243,386 - 123,581,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4123,243,426 - 123,581,331 (-)EnsemblGRCm39 Ensembl
GRCm384123,349,633 - 123,687,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,349,633 - 123,684,360 (-)EnsemblGRCm38mm10GRCm38
MGSCv374123,026,959 - 123,361,603 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,851,896 - 123,186,492 (-)NCBIMGSCv36mm8
Celera4121,682,320 - 122,018,135 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.42NCBI
Macf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545216,798,911 - 17,024,732 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545216,684,784 - 17,025,940 (+)NCBIChiLan1.0ChiLan1.0
MACF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,340,369 - 187,743,318 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,478,005 - 186,880,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,369,021 - 38,771,911 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1139,820,066 - 40,097,748 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl139,820,394 - 40,096,558 (+)Ensemblpanpan1.1panPan2
Macf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,228,978 - 55,576,554 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,178,791 - 21,400,147 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,053,755 - 21,401,336 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MACF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,153,005 - 95,301,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1694,960,385 - 95,318,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,111,268 - 88,403,214 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MACF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,413,111 - 93,814,388 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603323,023,831 - 23,431,976 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Macf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476421,782,162 - 22,014,676 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476421,663,516 - 22,015,866 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Macf1
1439 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:97
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000045400
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
7411722Strs6Sensitivity to stroke QTL 63.9cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)5134972980138113556Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat

Markers in Region
SHGC-74638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25135,623,891 - 135,624,057 (+)MAPPERmRatBN7.2
Rnor_6.05141,039,618 - 141,039,783NCBIRnor6.0
Rnor_5.05144,829,751 - 144,829,916UniSTSRnor5.0
RGSC_v3.45142,659,889 - 142,660,054UniSTSRGSC3.4
Celera5134,162,222 - 134,162,387UniSTS
Cytogenetic Map5q36UniSTS
RH131646  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25135,624,798 - 135,624,990 (+)MAPPERmRatBN7.2
Rnor_6.05141,040,525 - 141,040,716NCBIRnor6.0
Rnor_5.05144,830,658 - 144,830,849UniSTSRnor5.0
RGSC_v3.45142,660,796 - 142,660,987UniSTSRGSC3.4
Celera5134,163,129 - 134,163,320UniSTS
RH 3.4 Map5890.4UniSTS
Cytogenetic Map5q36UniSTS
RH133884  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25135,888,620 - 135,888,807 (+)MAPPERmRatBN7.2
Rnor_6.05141,304,136 - 141,304,322NCBIRnor6.0
Rnor_5.05145,095,060 - 145,095,246UniSTSRnor5.0
RGSC_v3.45142,924,407 - 142,924,593UniSTSRGSC3.4
Celera5134,426,150 - 134,426,336UniSTS
RH 3.4 Map5890.4UniSTS
Cytogenetic Map5q36UniSTS
AA858740  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25135,623,979 - 135,624,193 (+)MAPPERmRatBN7.2
Rnor_6.05141,039,706 - 141,039,919NCBIRnor6.0
Rnor_5.05144,829,839 - 144,830,052UniSTSRnor5.0
RGSC_v3.45142,659,977 - 142,660,190UniSTSRGSC3.4
Celera5134,162,310 - 134,162,523UniSTS
RH 3.4 Map5890.2UniSTS
Cytogenetic Map5q36UniSTS
BQ193041  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25135,808,810 - 135,808,973 (+)MAPPERmRatBN7.2
Rnor_6.05141,224,527 - 141,224,689NCBIRnor6.0
Rnor_5.05145,014,937 - 145,015,099UniSTSRnor5.0
RGSC_v3.45142,844,798 - 142,844,960UniSTSRGSC3.4
Celera5134,347,189 - 134,347,351UniSTS
RH 3.4 Map5875.0UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000045400   ⟹   ENSRNOP00000041065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,931,525 (-)Ensembl
Rnor_6.0 Ensembl5141,040,752 - 141,229,781 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081482   ⟹   ENSRNOP00000075119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,877,039 (-)Ensembl
Rnor_6.0 Ensembl5141,039,587 - 141,242,131 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084109   ⟹   ENSRNOP00000069807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,945,905 (-)Ensembl
Rnor_6.0 Ensembl5141,039,468 - 141,363,524 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091828   ⟹   ENSRNOP00000069001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,791,601 (-)Ensembl
Rnor_6.0 Ensembl5141,040,752 - 141,229,781 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099669   ⟹   ENSRNOP00000082051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,945,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101846   ⟹   ENSRNOP00000084588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,836,582 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103325   ⟹   ENSRNOP00000077375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,827,062 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104350   ⟹   ENSRNOP00000096978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,931,525 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113796   ⟹   ENSRNOP00000095347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,945,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120102   ⟹   ENSRNOP00000088940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5135,623,742 - 135,931,525 (-)Ensembl
RefSeq Acc Id: NM_001135758   ⟹   NP_001129230
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,829 - 141,233,890 (-)NCBI
mRatBN7.25135,623,734 - 135,949,088 (-)NCBI
Rnor_6.05141,039,455 - 141,363,524 (-)NCBI
Rnor_5.05144,829,588 - 145,151,477 (-)NCBI
RGSC_v3.45142,659,726 - 142,986,873 (-)RGD
Celera5134,162,059 - 134,482,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110337   ⟹   XP_038966265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,909 (-)NCBI
mRatBN7.25135,623,734 - 135,949,097 (-)NCBI
RefSeq Acc Id: XM_039110338   ⟹   XP_038966266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,908 (-)NCBI
mRatBN7.25135,623,734 - 135,949,097 (-)NCBI
RefSeq Acc Id: XM_039110340   ⟹   XP_038966268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,908 (-)NCBI
mRatBN7.25135,623,734 - 135,949,097 (-)NCBI
RefSeq Acc Id: XM_063287987   ⟹   XP_063144057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,959 (-)NCBI
RefSeq Acc Id: XM_063287989   ⟹   XP_063144059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,959 (-)NCBI
RefSeq Acc Id: XM_063287990   ⟹   XP_063144060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,959 (-)NCBI
RefSeq Acc Id: XM_063287991   ⟹   XP_063144061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,958 (-)NCBI
RefSeq Acc Id: XM_063287992   ⟹   XP_063144062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,958 (-)NCBI
RefSeq Acc Id: XM_063287993   ⟹   XP_063144063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,958 (-)NCBI
RefSeq Acc Id: XM_063287994   ⟹   XP_063144064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,957 (-)NCBI
RefSeq Acc Id: XM_063287995   ⟹   XP_063144065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,957 (-)NCBI
RefSeq Acc Id: XM_063287996   ⟹   XP_063144066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,083,959 (-)NCBI
RefSeq Acc Id: XM_063287997   ⟹   XP_063144067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,428 (-)NCBI
RefSeq Acc Id: XM_063287999   ⟹   XP_063144069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,234,087 (-)NCBI
RefSeq Acc Id: XM_063288000   ⟹   XP_063144070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,909 (-)NCBI
RefSeq Acc Id: XM_063288001   ⟹   XP_063144071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,428 (-)NCBI
RefSeq Acc Id: XM_063288002   ⟹   XP_063144072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,234,127 (-)NCBI
RefSeq Acc Id: XM_063288003   ⟹   XP_063144073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,120,455 (-)NCBI
RefSeq Acc Id: XM_063288004   ⟹   XP_063144074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,111,420 (-)NCBI
RefSeq Acc Id: XM_063288005   ⟹   XP_063144075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,173,189 (-)NCBI
RefSeq Acc Id: XM_063288006   ⟹   XP_063144076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,120,453 (-)NCBI
RefSeq Acc Id: XM_063288007   ⟹   XP_063144077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,111,502 (-)NCBI
RefSeq Acc Id: XM_063288008   ⟹   XP_063144078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,173,187 (-)NCBI
RefSeq Acc Id: XM_063288009   ⟹   XP_063144079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,112,630 (-)NCBI
RefSeq Acc Id: XM_063288010   ⟹   XP_063144080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,926,565 - 141,083,961 (-)NCBI
RefSeq Acc Id: XM_063288011   ⟹   XP_063144081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,926,565 - 141,083,961 (-)NCBI
RefSeq Acc Id: XM_063288012   ⟹   XP_063144082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,905 (-)NCBI
RefSeq Acc Id: XM_063288013   ⟹   XP_063144083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,905 (-)NCBI
RefSeq Acc Id: XM_063288014   ⟹   XP_063144084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,904 (-)NCBI
RefSeq Acc Id: XM_063288015   ⟹   XP_063144085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85140,908,953 - 141,233,904 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001129230 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966265 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966266 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966268 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144057 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144059 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144060 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144061 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144062 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144063 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144069 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144072 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144074 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144075 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144077 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144081 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144082 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144083 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144084 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144085 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZHV2 (Get FASTA)   NCBI Sequence Viewer  
  EDL80380 (Get FASTA)   NCBI Sequence Viewer  
  EDL80381 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041065.6
  ENSRNOP00000069001.2
  ENSRNOP00000069807.2
  ENSRNOP00000075119.2
  ENSRNOP00000077375.1
  ENSRNOP00000082051.1
  ENSRNOP00000084588.1
  ENSRNOP00000088940.1
  ENSRNOP00000095347.1
  ENSRNOP00000096978.1
RefSeq Acc Id: NP_001129230   ⟸   NM_001135758
- UniProtKB: A0A0G2JWA8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041065   ⟸   ENSRNOT00000045400
Ensembl Acc Id: ENSRNOP00000075119   ⟸   ENSRNOT00000081482
Ensembl Acc Id: ENSRNOP00000069807   ⟸   ENSRNOT00000084109
Ensembl Acc Id: ENSRNOP00000069001   ⟸   ENSRNOT00000091828
RefSeq Acc Id: XP_038966268   ⟸   XM_039110340
- Peptide Label: isoform X26
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966266   ⟸   XM_039110338
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AAP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966265   ⟸   XM_039110337
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AAP8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082051   ⟸   ENSRNOT00000099669
Ensembl Acc Id: ENSRNOP00000096978   ⟸   ENSRNOT00000104350
Ensembl Acc Id: ENSRNOP00000088940   ⟸   ENSRNOT00000120102
Ensembl Acc Id: ENSRNOP00000077375   ⟸   ENSRNOT00000103325
Ensembl Acc Id: ENSRNOP00000095347   ⟸   ENSRNOT00000113796
Ensembl Acc Id: ENSRNOP00000084588   ⟸   ENSRNOT00000101846
RefSeq Acc Id: XP_063144072   ⟸   XM_063288002
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144069   ⟸   XM_063287999
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AAP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144070   ⟸   XM_063288000
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144083   ⟸   XM_063288013
- Peptide Label: isoform X22
- UniProtKB: D3ZHV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144082   ⟸   XM_063288012
- Peptide Label: isoform X21
- UniProtKB: D3ZHV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144085   ⟸   XM_063288015
- Peptide Label: isoform X24
- UniProtKB: D3ZHV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144084   ⟸   XM_063288014
- Peptide Label: isoform X23
- UniProtKB: D3ZHV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063144071   ⟸   XM_063288001
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144067   ⟸   XM_063287997
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AAP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144075   ⟸   XM_063288005
- Peptide Label: isoform X14
- UniProtKB: A0A0G2K9T4 (UniProtKB/TrEMBL),   A0A8I6AAP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144078   ⟸   XM_063288008
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K9T4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144073   ⟸   XM_063288003
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZYF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144076   ⟸   XM_063288006
- Peptide Label: isoform X15
- UniProtKB: A0A8I5ZYF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144079   ⟸   XM_063288009
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AP57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144077   ⟸   XM_063288007
- Peptide Label: isoform X16
- UniProtKB: A0A8I5YCC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144074   ⟸   XM_063288004
- Peptide Label: isoform X13
- UniProtKB: A0A8I5YCC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144060   ⟸   XM_063287990
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AP57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144066   ⟸   XM_063287996
- Peptide Label: isoform X9
- UniProtKB: A0A0G2JWA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144059   ⟸   XM_063287989
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144057   ⟸   XM_063287987
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144062   ⟸   XM_063287992
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144061   ⟸   XM_063287991
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144063   ⟸   XM_063287993
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144065   ⟸   XM_063287995
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144064   ⟸   XM_063287994
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144081   ⟸   XM_063288011
- Peptide Label: isoform X20
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144080   ⟸   XM_063288010
- Peptide Label: isoform X19
- UniProtKB: A0A8I6ATL8 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)   EF-hand   GAR   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694015
Promoter ID:EPDNEW_R4529
Type:initiation region
Name:Macf1_1
Description:microtubule-actin crosslinking factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05141,242,058 - 141,242,118EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306057 AgrOrtholog
BioCyc Gene G2FUF-40003 BioCyc
Ensembl Genes ENSRNOG00000016047 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045400.6 UniProtKB/TrEMBL
  ENSRNOT00000081482.2 UniProtKB/TrEMBL
  ENSRNOT00000084109.2 UniProtKB/TrEMBL
  ENSRNOT00000091828.2 UniProtKB/TrEMBL
  ENSRNOT00000099669.1 UniProtKB/TrEMBL
  ENSRNOT00000101846.1 UniProtKB/TrEMBL
  ENSRNOT00000103325.1 UniProtKB/TrEMBL
  ENSRNOT00000104350.1 UniProtKB/TrEMBL
  ENSRNOT00000113796.1 UniProtKB/TrEMBL
  ENSRNOT00000120102.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.1060 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.920.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1290.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Desmoplakin_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Desmoplakin_Spectrin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCN-like_spectrin-like_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plakin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plakin_repeat_sf UniProtKB/TrEMBL
  Plectin_repeat UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene Macf1 ENTREZGENE
PANTHER EPIPLAKIN UniProtKB/TrEMBL
  MICROTUBULE-ACTIN CROSS-LINKING FACTOR 1, ISOFORMS 1/2/3/5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SHORT STOP, ISOFORM H UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plectin UniProtKB/TrEMBL
  SH3_10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SR_plectin_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Macf1 PhenoGen
PROSITE ACTININ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016047 RatGTEx
SMART DELLA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLEC UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF143575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF75399 UniProtKB/TrEMBL
UniProt A0A0G2JU82_RAT UniProtKB/TrEMBL
  A0A0G2JWA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K9T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUE8_RAT UniProtKB/TrEMBL
  A0A8I5ZYF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AP57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATL8 ENTREZGENE, UniProtKB/TrEMBL
  A6IS29_RAT UniProtKB/TrEMBL
  A6IS30_RAT UniProtKB/TrEMBL
  D3ZHV2 ENTREZGENE
  M9MMM9_RAT UniProtKB/TrEMBL
  MACF1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-01-20 Macf1  microtubule-actin crosslinking factor 1   LOC362587  similar to microfilament and actin filament cross-linker protein isoform b  Data merged from RGD:1584957 737654 APPROVED
2008-04-30 Macf1  microtubule-actin crosslinking factor 1   Macf1_predicted  microtubule-actin crosslinking factor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC362587  similar to microfilament and actin filament cross-linker protein isoform b      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Macf1_predicted  microtubule-actin crosslinking factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED