Rnu5f-1l1 (RNA, U5F small nuclear 1 like 1) - Rat Genome Database

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Gene: Rnu5f-1l1 (RNA, U5F small nuclear 1 like 1) Rattus norvegicus
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Symbol: Rnu5f-1l1 (Ensembl: LOC120103376)
Name: RNA, U5F small nuclear 1 like 1 (Ensembl:U5 spliceosomal RNA)
RGD ID: 41391363
Description: Orthologous to human RNU5F-1 (RNA, U5F small nuclear 1); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog); Aflatoxin B2 alpha (ortholog).
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120103376; U5 spliceosomal RNA
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,903,593 - 135,903,708 (+)NCBIGRCr8
mRatBN7.25130,667,018 - 130,667,133 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5130,667,018 - 130,667,133 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rnu5f-1l1Rat2-hydroxypropanoic acid increases expressionISORNU5F-1 (Homo sapiens)6480464Lactic Acid results in increased expression of RNU5F-1 mRNACTDPMID:30851411
Rnu5f-1l1Rataflatoxin B1 affects methylationISORNU5F-1 (Homo sapiens)6480464Aflatoxin B1 affects the methylation of RNU5F-1 intronCTDPMID:30157460
Rnu5f-1l1RatAflatoxin B2 alpha decreases methylationISORNU5F-1 (Homo sapiens)6480464aflatoxin B2 results in decreased methylation of RNU5F-1 intronCTDPMID:30157460
Rnu5f-1l1Ratbenzo[a]pyrene affects methylationISORNU5F-1 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of RNU5F-1 intronCTDPMID:30157460
Rnu5f-1l1Ratbenzo[e]pyrene increases methylationISORNU5F-1 (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of RNU5F-1 intronCTDPMID:30157460
Rnu5f-1l1Ratcadmium dichloride increases expressionISORNU5F-1 (Homo sapiens)6480464Cadmium Chloride results in increased expression of RNU5F-1 mRNACTDPMID:38568856
Rnu5f-1l1Ratmethapyrilene increases methylationISORNU5F-1 (Homo sapiens)6480464Methapyrilene results in increased methylation of RNU5F-1 intronCTDPMID:30157460
Rnu5f-1l1RatN-Nitrosopyrrolidine decreases expressionISORNU5F-1 (Homo sapiens)6480464N-Nitrosopyrrolidine results in decreased expression of RNU5F-1 mRNACTDPMID:32234424
Rnu5f-1l1Ratpotassium chromate decreases expressionISORNU5F-1 (Homo sapiens)6480464potassium chromate(VI) results in decreased expression of RNU5F-1 mRNACTDPMID:22714537
Rnu5f-1l1Ratrac-lactic acid increases expressionISORNU5F-1 (Homo sapiens)6480464Lactic Acid results in increased expression of RNU5F-1 mRNACTDPMID:30851411

1 to 10 of 10 rows


Rnu5f-1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,903,593 - 135,903,708 (+)NCBIGRCr8
mRatBN7.25130,667,018 - 130,667,133 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5130,667,018 - 130,667,133 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map5q36NCBI
RNU5F-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,721,786 - 44,721,901 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,721,786 - 44,721,902 (-)EnsemblGRCh38hg38GRCh38
GRCh37145,187,458 - 45,187,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,960,045 - 44,960,160 (-)NCBINCBI36Build 36hg18NCBI36
Celera2214,106,517 - 14,106,577 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef143,300,991 - 43,301,106 (-)NCBIHuRef
CHM1_1145,303,368 - 45,303,483 (-)NCBICHM1_1
T2T-CHM13v2.0144,592,727 - 44,592,842 (-)NCBIT2T-CHM13v2.0
Gm23143
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,059,725 - 117,059,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,059,725 - 117,059,840 (+)EnsemblGRCm39 Ensembl
GRCm384117,202,528 - 117,202,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,202,528 - 117,202,643 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4D1NCBI
LOC119870595
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha280,895,043 - 80,895,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,023,447 - 85,023,563 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,023,447 - 85,023,563 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,772,637 - 81,772,753 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,772,833 - 82,772,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,838,226 - 83,838,342 (-)NCBIUU_Cfam_GSD_1.0

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Variants in Rnu5f-1l1
1 total Variants

1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat

1 to 10 of 52 rows





RefSeq Transcripts XR_005505419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5130,667,018 - 130,667,133 (+)Ensembl
RefSeq Acc Id: XR_005505419
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85135,903,593 - 135,903,708 (+)NCBI
mRatBN7.25130,667,018 - 130,667,133 (+)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-40203 BioCyc
Ensembl Genes ENSRNOG00000063748 Ensembl
NCBI Gene LOC120103376 ENTREZGENE
PhenoGen Rnu5f-1l1 PhenoGen
RatGTEx ENSRNOG00000063748 RatGTEx
RNAcentral URS000067621D RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-02-18 Rnu5f-1l1  RNA, U5F small nuclear 1 like 1  LOC120103376  U5 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-27 LOC120103376  U5 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL