Zfp69 (zinc finger protein 69) - Rat Genome Database

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Gene: Zfp69 (zinc finger protein 69) Rattus norvegicus
Analyze
Symbol: Zfp69
Name: zinc finger protein 69
RGD ID: 2322990
Description: Predicted to be involved in regulation of lipid metabolic process. Predicted to be located in nucleus. Orthologous to several human genes including ZFP69 (ZFP69 zinc finger protein); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07049821.2; LOC100363455; rCG30900-like; Zfp965; zinc finger protein 69-like; zinc finger protein 965; zinc finger protein ZFP69-like
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,783,735 - 139,801,650 (-)NCBIGRCr8
mRatBN7.25134,502,002 - 134,516,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,501,998 - 134,514,358 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05139,856,457 - 139,871,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,857,363 - 139,864,393 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.05143,649,668 - 143,665,111 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,515,569 - 141,527,468 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5133,055,493 - 133,070,887 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26232096  


Genomics

Comparative Map Data
Zfp69
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,783,735 - 139,801,650 (-)NCBIGRCr8
mRatBN7.25134,502,002 - 134,516,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,501,998 - 134,514,358 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05139,856,457 - 139,871,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,857,363 - 139,864,393 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.05143,649,668 - 143,665,111 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,515,569 - 141,527,468 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5133,055,493 - 133,070,887 (-)NCBICelera
Cytogenetic Map5q36NCBI
ZFP69
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,477,290 - 40,496,343 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,477,290 - 40,496,343 (+)EnsemblGRCh38hg38GRCh38
GRCh37140,942,962 - 40,962,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,715,889 - 40,734,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34140,612,394 - 40,631,053NCBI
Celera139,225,688 - 39,244,405 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,061,578 - 39,080,071 (+)NCBIHuRef
CHM1_1141,059,282 - 41,077,991 (+)NCBICHM1_1
T2T-CHM13v2.0140,346,903 - 40,365,936 (+)NCBIT2T-CHM13v2.0
Zfp69
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,786,201 - 120,808,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,787,334 - 120,808,896 (-)EnsemblGRCm39 Ensembl
GRCm384120,930,133 - 120,951,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,930,137 - 120,951,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv374120,602,742 - 120,624,306 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364120,427,772 - 120,447,053 (-)NCBIMGSCv36mm8
Celera4119,648,302 - 119,662,610 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map456.66NCBI
ZFP69
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,325,753 - 186,343,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11185,465,431 - 185,485,327 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,767,402 - 39,786,090 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1141,089,353 - 41,108,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl141,089,353 - 41,108,690 (+)Ensemblpanpan1.1panPan2
ZFP69B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,510,760 - 2,526,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,512,402 - 2,547,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,768,847 - 2,785,733 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,599,668 - 2,616,812 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,599,668 - 2,637,689 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,505,462 - 2,522,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,565,397 - 2,582,270 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,581,716 - 2,598,591 (-)NCBIUU_Cfam_GSD_1.0
LOC110599049
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,396,896 - 56,402,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647422,221,687 - 22,237,660 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP69
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,424,669 - 92,442,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2092,424,954 - 92,441,849 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603324,436,133 - 24,455,485 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp69
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,917,668 - 22,938,916 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,917,760 - 22,938,441 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp69
35 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030016   ⟹   ENSRNOP00000038492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5134,501,998 - 134,514,358 (-)Ensembl
RefSeq Acc Id: XM_002729537   ⟹   XP_002729583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,783,735 - 139,801,650 (-)NCBI
mRatBN7.25134,502,002 - 134,516,428 (-)NCBI
Rnor_6.05139,856,457 - 139,871,896 (-)NCBI
Rnor_5.05143,649,668 - 143,665,111 (-)NCBI
RGSC_v3.45141,515,569 - 141,527,468 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238790   ⟹   XP_006238852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,783,735 - 139,801,626 (-)NCBI
mRatBN7.25134,502,002 - 134,516,428 (-)NCBI
Rnor_6.05139,856,457 - 139,871,896 (-)NCBI
Rnor_5.05143,649,668 - 143,665,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238791   ⟹   XP_006238853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,783,735 - 139,801,626 (-)NCBI
mRatBN7.25134,502,002 - 134,516,428 (-)NCBI
Rnor_6.05139,856,457 - 139,871,896 (-)NCBI
Rnor_5.05143,649,668 - 143,665,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111227   ⟹   XP_038967155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,783,735 - 139,799,348 (-)NCBI
mRatBN7.25134,502,002 - 134,514,141 (-)NCBI
Protein Sequences
Protein RefSeqs XP_002729583 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238852 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967155 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038492
  ENSRNOP00000038492.6
Reference Protein Sequences
RefSeq Acc Id: XP_002729583   ⟸   XM_002729537
- Peptide Label: isoform X2
- UniProtKB: D4AAX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238853   ⟸   XM_006238791
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006238852   ⟸   XM_006238790
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038967155   ⟸   XM_039111227
- Peptide Label: isoform X4
- UniProtKB: A6IS01 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000038492   ⟸   ENSRNOT00000030016
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAX1-F1-model_v2 AlphaFold D4AAX1 1-427 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322990 AgrOrtholog
BioCyc Gene G2FUF-40047 BioCyc
Ensembl Genes ENSRNOG00000028662 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030016.6 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:100363455 UniProtKB/TrEMBL
NCBI Gene 100363455 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER IMPRINTED 2 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 628 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp69 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028662 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A6IS01 ENTREZGENE, UniProtKB/TrEMBL
  D4AAX1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Zfp69  zinc finger protein 69  AABR07049821.2    Data merged from RGD:15003702 737654 PROVISIONAL
2019-11-08 AABR07049821.2        Symbol and Name status set to provisional 45752 PROVISIONAL
2012-11-27 Zfp69  zinc finger protein 69  Zfp965  zinc finger protein 965  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-09-11 Zfp965  zinc finger protein 965  LOC100363455  rCG30900-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100363455  rCG30900-like      Symbol and Name status set to provisional 70820 PROVISIONAL